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modules_20130127
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| fgeorgatos@gaia-10:~: $ module avail -d | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/bio ------------------------------------------ | |
| ABySS/1.3.4-ictce-5.3.0-Python-2.7.3 MetaVelvet/1.2.01-ictce-5.3.0 | |
| ALLPATHS-LG/46968-goolf-1.4.10 Mothur/1.30.2-ictce-5.3.0 | |
| AMOS/3.1.0-ictce-5.3.0 MrBayes/3.2.0-ictce-5.3.0 | |
| BEDTools/2.18.1-goolf-1.4.10 NCBI-Toolkit/9.0.0-goolf-1.4.10 | |
| BFAST/0.7.0a-ictce-5.3.0 Oases/0.2.08-ictce-5.3.0 | |
| BLAST/2.2.28-ictce-5.3.0-Python-2.7.3 PAML/4.7-ictce-5.3.0 | |
| BLAT/3.5-goolf-1.4.10 PLINK/1.07-ictce-5.3.0 | |
| BWA/0.7.5a-goolf-1.4.10 Pasha/1.0.5-ictce-5.3.0 | |
| BamTools/2.2.3-ictce-5.3.0 Primer3/2.3.0-ictce-5.3.0 | |
| BioPerl/1.6.1-ictce-5.3.0-Perl-5.16.3 RAxML/7.7.5-ictce-5.3.0-seq-sse3 | |
| Biopython/1.61-ictce-5.3.0-Python-2.7.3 RNAz/2.1-ictce-5.3.0 | |
| Bowtie2/2.0.2-ictce-5.3.0 SAMtools/0.1.19-goolf-1.4.10 | |
| CAP3/20071221-opteron SHRiMP/2.2.3-ictce-5.3.0 | |
| CD-HIT/4.5.4-ictce-5.3.0-2011-03-07 SOAPdenovo/1.05-ictce-5.3.0 | |
| ClustalW2/2.1-ictce-5.3.0 SURF/1.0-ictce-5.3.0-LINUXAMD64 | |
| Cufflinks/2.0.2-goolf-1.4.10 Stacks/1.03-ictce-5.3.0 | |
| EMBOSS/6.5.7-ictce-5.3.0 Stride/1.0-ictce-5.3.0 | |
| FASTA/36.3.5e-ictce-5.3.0 Trinity/2013-02-25-goolf-1.4.10 | |
| FASTX-Toolkit/0.0.13.2-ictce-5.3.0 ViennaRNA/2.0.7-ictce-5.3.0 | |
| FSL/4.1.9-ictce-5.3.0 bam2fastq/1.1.0-ictce-5.3.0 | |
| FreeSurfer/5.3.0-centos4_x86_64 biodeps/1.6-ictce-5.3.0 | |
| GLIMMER/3.02b-ictce-5.3.0 cutadapt/1.3-goolf-1.4.10-Python-2.7.3 | |
| GROMACS/4.6.5-goolfc-2.6.10-mt libgtextutils/0.6.1-ictce-5.3.0 | |
| HH-suite/2.0.16-goolf-1.4.10 libharu/2.2.0-ictce-5.3.0 | |
| HMMER/3.1b1-ictce-5.3.0 mpiBLAST/1.6.0-ictce-5.3.0 | |
| HTSeq/0.5.4p5-goolf-1.4.10-Python-2.7.6 orthomcl/2.0.8-ictce-5.3.0-Perl-5.16.3 | |
| MUMmer/3.23-ictce-5.3.0 picard/1.100 | |
| MUSCLE/3.8.31-i86linux64 | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/cae ------------------------------------------ | |
| OpenFOAM/2.2.0-goolf-1.4.10 UFC/2.0.5-ictce-5.3.0-Python-2.7.3 | |
| ParFlow/605-goolf-1.4.10 UFL/1.0.0-ictce-5.3.0-Python-2.7.3 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/chem ------------------------------------------ | |
| ABINIT/7.2.1-x86_64_linux_gnu4.5 PSI/4.0b4-ictce-5.3.0 | |
| ASE/3.6.0.2515-ictce-5.3.0-Python-2.7.3 QuantumESPRESSO/5.0.2-ictce-4.0.6 | |
| DL_POLY_Classic/1.9-ictce-5.3.0-no-gui libctl/3.2.1-ictce-5.3.0 | |
| GPAW/0.9.0.8965-ictce-5.3.0-Python-2.7.3 libxc/2.0.2-ictce-5.3.0 | |
| Libint/1.1.4-ictce-5.3.0 yaff/1.0-ictce-5.3.0-Python-2.7.3 | |
| ORCA/2_9_1-linux_x86-64 | |
| --------------------------------------- /opt/apps/HPCBIOS/modules/compiler ---------------------------------------- | |
| Clang/3.3-GCC-4.8.1 GHC/7.6.2-goolf-1.4.10 icc/2013.5.192 ifort/2013.5.192 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/data ------------------------------------------ | |
| CDO/1.6.0-goolf-1.4.10 XML-LibXML/2.0018-goolf-1.4.10-Perl-5.16.3 | |
| CRF++/0.57-ictce-5.3.0 XML-Simple/2.20-goolf-1.4.10-Perl-5.16.3 | |
| GDAL/1.9.2-ictce-5.3.0 YAML-Syck/1.27-ictce-5.3.0-Perl-5.16.3 | |
| HDF/4.2.8-ictce-5.3.0 YamCha/0.33-ictce-5.3.0 | |
| HDF5/1.8.11-ictce-5.3.0-serial g2clib/1.4.0-ictce-5.3.0 | |
| MDP/3.3-ictce-5.3.0-Python-2.7.3 g2lib/1.4.0-ictce-5.3.0 | |
| Oger/1.1.3-ictce-5.3.0-Python-2.7.3 grib_api/1.10.0-ictce-5.3.0 | |
| ROOT/v5.34.01-goolf-1.4.10 h5py/2.1.3-ictce-5.3.0-Python-2.7.3 | |
| Sablotron/1.0.3-ictce-5.3.0 h5utils/1.12.1-ictce-5.3.0 | |
| Silo/4.9.1-ictce-5.3.0 netCDF/4.2.1.1-ictce-5.3.0 | |
| TiCCutils/0.3-ictce-5.3.0 netCDF-C++/4.2-ictce-5.3.0 | |
| TiMBL/6.4.3-ictce-5.3.0 netCDF-Fortran/4.2-ictce-5.3.0 | |
| TinySVM/0.09-ictce-5.3.0 scikit-learn/0.14-ictce-5.3.0-Python-2.7.5 | |
| --------------------------------------- /opt/apps/HPCBIOS/modules/debugger ---------------------------------------- | |
| GDB/7.5.1-goolf-1.4.10 Valgrind/3.8.1-goolf-1.4.10 | |
| TotalView/8.12.0-0-linux-x86-64 cgdb/0.6.5-ictce-5.3.0 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/devel ----------------------------------------- | |
| Autoconf/2.69-ictce-5.3.0 findutils/4.2.33-ictce-5.3.0 | |
| Automake/1.14-ictce-5.3.0 glproto/1.4.16-ictce-5.3.0 | |
| Boost/1.53.0-ictce-5.3.0 google-sparsehash/2.0.2-ictce-5.3.0 | |
| CMake/2.8.12-ictce-5.3.0 gperf/3.0.4-ictce-5.3.0 | |
| Diffutils/3.2-ictce-5.3.0 guile/1.8.8-ictce-5.3.0 | |
| Doxygen/1.8.3.1-ictce-5.3.0 imake/1.0.5-ictce-5.3.0 | |
| FCM/2.3.1 libSM/1.2.1-ictce-5.3.0 | |
| Greenlet/0.4.0-ictce-5.3.0-Python-2.7.3 likwid/3.0.0-ictce-5.3.0 | |
| Instant/1.0.0-ictce-5.3.0-Python-2.7.3 make/3.82-ictce-5.3.0 | |
| JUnit/4.11-Java-1.7.0_15 makedepend/1.0.4-ictce-5.3.0 | |
| Jinja2/2.6-ictce-5.3.0-Python-2.7.3 ncurses/5.9-20130406-cgoolf-1.1.7 | |
| LZO/2.06-ictce-5.3.0 paycheck/1.0.2-ictce-5.3.0-Python-2.7.3 | |
| PCRE/8.12-ictce-5.3.0 pkg-config/0.27.1-ictce-5.3.0 | |
| PyZMQ/2.2.0.1-ictce-5.3.0-Python-2.7.3-zmq3 printproto/1.0.5-ictce-5.3.0 | |
| Qt/4.8.4-ictce-5.3.0 python-meep/1.4.2-goolf-1.4.10-Python-2.7.3 | |
| SCons/2.3.0-ictce-5.3.0-Python-2.7.5 setuptools/0.6c11-ictce-5.3.0-Python-2.7.3 | |
| SQLite/3.8.1-ictce-5.3.0 xbitmaps/1.1.1-ictce-5.3.0 | |
| SWIG/2.0.4-ictce-5.3.0-Python-2.7.3 xcb-proto/1.7-ictce-5.3.0-Python-2.7.3 | |
| ZeroMQ/3.2.2-ictce-5.3.0 xorg-macros/1.17-ictce-5.3.0 | |
| ant/1.9.0-Java-1.7.0_15 xproto/7.0.23-ictce-5.3.0 | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/geo ------------------------------------------ | |
| WPS/3.5.1-ictce-5.3.0-dmpar WRF/3.5.1-ictce-5.3.0-dmpar | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/lang ------------------------------------------ | |
| Bison/2.7-ictce-5.3.0 Perl/5.16.3-ictce-5.3.0 gawk/4.0.2-ictce-5.3.0 | |
| Cython/0.19.1-ictce-5.3.0-Python-2.7.3 Python/3.2.3-ictce-5.3.0 otcl/1.14-ictce-5.3.0 | |
| EPD/7.3-2-rh5 Tcl/8.6.1-ictce-5.3.0 problog/1.1-ictce-5.3.0 | |
| Java/1.7.0_21 Yasm/1.2.0-ictce-5.3.0 tclcl/1.20-ictce-5.3.0 | |
| NASM/2.07-ictce-5.3.0 byacc/20120526-ictce-5.3.0 | |
| PP/1.6.4-ictce-5.3.0-Python-2.7.5 flex/2.5.37-ictce-5.3.0 | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/lib ------------------------------------------ | |
| CCfits/2.4-ictce-5.3.0 libungif/4.1.4-ictce-5.3.0 | |
| CFITSIO/3.34-ictce-5.3.0 libunistring/0.9.3-ictce-5.3.0 | |
| LibTIFF/4.0.3-ictce-5.3.0 libxcb/1.8-ictce-5.3.0-Python-2.7.3 | |
| PyYAML/3.10-ictce-5.3.0-Python-2.7.3 libxml2/2.9.1-ictce-5.3.0 | |
| freeglut/2.8.1-ictce-5.3.0 libxslt/1.1.28-ictce-5.3.0 | |
| libdrm/2.4.27-ictce-5.3.0 libyaml/0.1.4-ictce-5.3.0 | |
| libffi/3.0.13-ictce-5.3.0 lxml/3.1.2-ictce-5.3.0-Python-2.7.3 | |
| libidn/1.27-ictce-5.3.0 o2scl/0.913-goolf-1.4.10 | |
| libmatheval/1.1.8-ictce-5.3.0 pandas/0.11.0-ictce-5.3.0-Python-2.7.3 | |
| libpthread-stubs/0.3-ictce-5.3.0 phonopy/1.6.4-ictce-5.3.0-Python-2.7.3 | |
| libreadline/6.2-ictce-5.3.0 tbb/4.0.5.339 | |
| libtool/2.4.2-ictce-5.3.0 zlib/1.2.8-ictce-5.5.0 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/math ------------------------------------------ | |
| CPLEX/12.4 ParMETIS/4.0.2-ictce-5.3.0 | |
| CVXOPT/1.1.5-ictce-5.3.0-Python-2.7.3 SCOTCH/6.0.0_esmumps-ictce-5.3.0 | |
| Eigen/3.1.4-ictce-5.3.0 ScientificPython/2.8-ictce-5.3.0-Python-2.7.3 | |
| FFC/1.0.0-ictce-5.3.0-Python-2.7.3 Shapely/1.2.15-ictce-5.3.0-Python-2.7.3 | |
| FIAT/1.1-ictce-5.3.0-Python-2.7.3 Theano/0.5.0-ictce-5.3.0-Python-2.7.3 | |
| GEOS/3.3.5-ictce-5.3.0 fmri/1.4-8-ictce-5.3.0-R-2.15.2 | |
| GMP/5.1.3-goolf-1.4.10 molmod/1.0-ictce-5.3.0-Python-2.7.3 | |
| Harminv/1.3.1-ictce-5.3.0 ncdf4/1.10-ictce-5.3.0-R-3.0.2-bare | |
| METIS/5.1.0-goolf-1.4.10 numexpr/2.0.1-ictce-5.3.0-Python-2.7.3 | |
| MPFR/3.1.0-ictce-5.3.0 numpy/1.8.0-ictce-5.3.0-Python-2.7.5 | |
| MUMPS/4.10.0-goolf-1.4.10-metis scipy/0.13.0-goolf-1.4.10-Python-2.7.3 | |
| Mesquite/2.3.0-ictce-5.3.0 sympy/0.7.2-ictce-5.3.0-Python-2.7.3 | |
| NEURON/7.2-ictce-5.3.0 | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/mpi ------------------------------------------ | |
| MPICH/3.0.3-ClangGCC-1.1.3 MVAPICH2/1.9-iccifort-2011.13.367 mpi4py/1.3-ictce-5.3.0-Python-2.7.3 | |
| MPICH2/3.0.4-GCC-4.8.1 impi/4.1.3.045 | |
| ---------------------------------------- /opt/apps/HPCBIOS/modules/numlib ----------------------------------------- | |
| ATLAS/3.10.1-gompi-1.5.12-no-OFED-LAPACK-3.4.2 MTL4/4.0.8878 | |
| Armadillo/2.4.4-ictce-5.3.0-Python-2.7.3 OpenBLAS/0.2.8-ictce-5.3.0-LAPACK-3.4.2 | |
| BLACS/1.1-gompi-1.1.0-no-OFED PETSc/3.3-p2-ictce-5.3.0-Python-2.7.3 | |
| CGAL/4.0-ictce-5.3.0-Python-2.7.3 SLEPc/3.3-p1-ictce-5.3.0-Python-2.7.3 | |
| CLHEP/2.1.1.0-ictce-5.3.0 SuiteSparse/3.7.0-ictce-5.3.0-withparmetis | |
| FFTW/3.3.3-ictce-5.3.0 Trilinos/10.12.2-ictce-5.3.0-Python-2.7.3 | |
| GSL/1.16-ictce-5.3.0 arpack-ng/3.1.3-ictce-5.3.0 | |
| Hypre/2.8.0b-ictce-5.3.0 beagle-lib/20120124-ictce-5.3.0 | |
| LAPACK/3.4.2-gompi-1.5.12-no-OFED imkl/11.1.1.106 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/perf ------------------------------------------ | |
| LWM2/1.1-ictce-5.3.0 OTF2/1.2.1-ictce-5.3.0 PDT/3.19-ictce-5.3.0 | |
| OTF/1.12.4-ictce-5.3.0 PAPI/5.2.0-ictce-5.3.0 ipp/7.0.5.233 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/phys ------------------------------------------ | |
| ESPResSo/3.1.1-ictce-5.3.0-serial Meep/1.2-ictce-5.3.0 UDUNITS/2.1.24-ictce-5.3.0 | |
| ---------------------------------------- /opt/apps/HPCBIOS/modules/system ----------------------------------------- | |
| CUDA/5.5.22 OpenPGM/5.2.122-ictce-5.3.0 OpenSSL/1.0.0-goolf-1.4.10 libpciaccess/0.13.1-ictce-5.3.0 | |
| --------------------------------------- /opt/apps/HPCBIOS/modules/toolchain --------------------------------------- | |
| ClangGCC/1.2.3 cgmpolf/1.1.6 gmvolf/1.7.12 | |
| HPCBIOS_Bioinfo/20130829-ictce-5.3.0 cgmvapich2/1.2.7 goalf/1.5.12-no-OFED | |
| HPCBIOS_LifeSciences/20130829-ictce-5.3.0 cgmvolf/1.2.7 iccifort/2011.13.367 | |
| HPCBIOS_Math/20130829-ictce-5.3.0 cgompi/1.1.7 ictce/6.1.5 | |
| PRACE/20130605-ictce-5.3.0 cgoolf/1.1.7 | |
| cgmpich/1.1.6 gmvapich2/1.7.12 | |
| ----------------------------------------- /opt/apps/HPCBIOS/modules/tools ----------------------------------------- | |
| Allinea/4.2-34164-Ubuntu-10.04-x86_64 binutils/2.22-goolf-1.4.10 | |
| Bash/4.2-ictce-5.3.0 bzip2/1.0.6 | |
| Bonnie++/1.03e-ictce-5.3.0 cURL/7.33.0-ictce-5.3.0 | |
| Corkscrew/2.0-ictce-5.3.0 ccache/3.1.9-ictce-5.3.0 | |
| ELinks/0.12pre5-ictce-5.3.0 cflow/1.4-ictce-5.3.0 | |
| EasyBuild/1.10.0 ed/1.9-ictce-5.3.0 | |
| GLPK/4.48-ictce-5.3.0 expat/2.1.0-ictce-5.3.0 | |
| HPL/2.0-ictce-5.3.0 git/1.8.3.1-goolf-1.4.10 | |
| IPython/1.1.0-goolf-1.4.10-Python-2.7.3 gzip/1.6-ictce-5.3.0 | |
| Inspector/2013_update6 itac/8.0.0.011 | |
| Iperf/2.0.5-ictce-5.3.0 lynx/2.8.7-ictce-5.3.0 | |
| Mercurial/2.5.2-ictce-5.3.0-Python-2.7.3 mc/4.6.1-ictce-5.3.0 | |
| SCOOP/0.5.3-ictce-5.3.0-Python-2.7.3 nano/2.2.6-ictce-5.3.0 | |
| Stow/1.3.3-ictce-5.3.0 ns/2.35-ictce-5.3.0 | |
| Szip/2.1-ictce-5.3.0 numactl/2.0.8-ictce-5.3.0 | |
| Tar/1.26-ictce-5.3.0 parallel/20130122-ictce-5.3.0 | |
| VSC-tools/0.1.2-ictce-5.3.0-Python-2.7.3 petsc4py/3.3-ictce-5.3.0-Python-2.7.3 | |
| VTune/2013_update10 pysqlite/2.6.3-ictce-5.3.0-Python-2.7.3 | |
| XML/3.95-0.1-ictce-5.3.0-R-2.15.2 qtop/53-1 | |
| a2ps/4.14-ictce-5.3.0 tcsh/6.18.01-ictce-5.3.0 | |
| aria2/1.15.1-ictce-5.3.0 util-linux/2.22.2-ictce-5.3.0 | |
| bbFTP/3.2.0-goolf-1.4.10 vsc-base/1.6.9 | |
| bbcp/12.01.30.00.0-amd64_linux26 zsh/5.0.2-ictce-5.3.0 | |
| bbftpPRO/9.3.1-ictce-5.3.0 zsync/0.6.2-ictce-5.3.0 | |
| ------------------------------------------ /opt/apps/HPCBIOS/modules/vis ------------------------------------------ | |
| AnalyzeFMRI/1.1-15-ictce-5.3.0-R-2.15.2 gettext/0.18.2-ictce-5.3.0 | |
| Docutils/0.9.1-ictce-5.3.0-Python-2.7.3 gnuplot/4.6.0-ictce-5.3.0 | |
| FLTK/1.3.2-ictce-5.3.0 libXaw/1.0.12-ictce-5.3.0 | |
| GLib/2.34.3-ictce-5.3.0 libXext/1.3.2-ictce-5.3.0 | |
| JasPer/1.900.1-ictce-5.3.0 libXfixes/5.0.1-ictce-5.3.0 | |
| Mesa/7.11.2-ictce-5.3.0-Python-2.7.3 libXi/1.7.2-ictce-5.3.0 | |
| Sphinx/1.1.3-ictce-5.3.0-Python-2.7.3 libXmu/1.1.2-ictce-5.3.0 | |
| Tk/8.5.15-ictce-5.3.0 libXp/1.0.2-ictce-5.3.0 | |
| VTK/5.10.1-ictce-5.3.0 libXpm/3.5.11-ictce-5.3.0 | |
| Viper/1.0.0-ictce-5.3.0-Python-2.7.3 libXt/1.1.4-ictce-5.3.0 | |
| XCrySDen/1.5.53-ictce-5.3.0 matplotlib/1.3.1-goolf-1.4.10-Python-2.7.6 | |
| cairo/1.12.14-goolf-1.4.10 motif/2.3.4-goolf-1.4.10 | |
| fixesproto/5.0-ictce-5.3.0 pixman/0.28.2-ictce-5.3.0 | |
| fontconfig/2.10.91-goolf-1.4.10 wiki2beamer/0.9.5-ictce-5.3.0-Python-2.7.3 | |
| freetype/2.5.0.1-ictce-5.3.0 | |
| ------------------------------------------ /opt/apps/default/modules/all ------------------------------------------ | |
| Advisor/2013_update4 CULASPARSE/S4-64bit HPCBIOS/20131224 standard/20130601 | |
| CULA/R16a-64bit DDT/4.1 Stata/12.1 testing/fgeorgatos | |
| ---------------- /opt/apps/HPCBIOS.20131224/software/Lmod/5.2-GCC-4.8.2/lmod/lmod/modulefiles/Core ---------------- | |
| lmod/lmod settarg/settarg | |
| Use "module spider" to find all possible modules. | |
| Use "module keyword key1 key2 ..." to search for all possible modules matching any of the "keys". | |
| fgeorgatos@gaia-10:~: $ |
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