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fgeorgatos / Questions_on_EB_v1.2.0rc1
Created February 27, 2013 02:09
Questions during test of EasyBuild v1.2.0rc1
OK, the log below came out of redirecting stdout of an automated eb run with various easyconfigs:
```
[...]
== COMPLETED: Installation ended successfully
== Results of the build can be found in the log file /opt/apps/HPCBIOS.20130226/software/Java/1.7.0_10/easybuild/easyb
uild-Java-1.7.0_10-20130226.221440.log
== processing EasyBuild easyconfig /opt/apps/default/software/easybuild/1.2.0rc1/easybuild-easyconfigs/easybuild/easyc
onfigs/r/R/R-2.15.2-ictce-4.0.6.eb
@fgeorgatos
fgeorgatos / gaia_modules_20130828
Created August 28, 2013 16:09
modules on system gaia as of 20130828
fgeorgatos@gaia-55:~: $ module av
---------------------------------------------------- /opt/apps/HPCBIOS.20130715/modules/bio -----------------------------------------------------
ABySS/1.3.4-goolf-1.4.10-Python-2.7.3 HH-suite/2.0.16-goolf-1.4.10 RNAz/2.1-ictce-5.3.0
ABySS/1.3.4-ictce-5.3.0-Python-2.7.3 HMMER/3.0-goolf-1.4.10 SAMtools/0.1.18-goolf-1.4.10
ALLPATHS-LG/46968-goolf-1.4.10 HMMER/3.0-ictce-5.3.0 SAMtools/0.1.18-ictce-5.3.0
AMOS/3.1.0-goolf-1.4.10 HMMER/3.1b1-goolf-1.4.10 SHRiMP/2.2.3-goolf-1.4.10
AMOS/3.1.0-ictce-5.3.0 HMMER/3.1b1-ictce-5.3.0 SHRiMP/2.2.3-ictce-5.3.0
BFAST/0.7.0a-goolf-1.4.10 Infernal/1.1rc1-goolf-1.4.10 SOAPdenovo/1.05-goolf-1.4.10
BFAST/0.7.0a-ictce-5.3.0 Infernal/1.1rc1-ictce-5.3.0 SOAPdenovo/1.05-ictce-5.3.0
@fgeorgatos
fgeorgatos / modules_20140127
Last active January 4, 2016 17:19
modules_20130127
fgeorgatos@gaia-10:~: $ module avail -d
------------------------------------------ /opt/apps/HPCBIOS/modules/bio ------------------------------------------
ABySS/1.3.4-ictce-5.3.0-Python-2.7.3 MetaVelvet/1.2.01-ictce-5.3.0
ALLPATHS-LG/46968-goolf-1.4.10 Mothur/1.30.2-ictce-5.3.0
AMOS/3.1.0-ictce-5.3.0 MrBayes/3.2.0-ictce-5.3.0
BEDTools/2.18.1-goolf-1.4.10 NCBI-Toolkit/9.0.0-goolf-1.4.10
BFAST/0.7.0a-ictce-5.3.0 Oases/0.2.08-ictce-5.3.0
BLAST/2.2.28-ictce-5.3.0-Python-2.7.3 PAML/4.7-ictce-5.3.0
BLAT/3.5-goolf-1.4.10 PLINK/1.07-ictce-5.3.0
@fgeorgatos
fgeorgatos / bio category, end of 2013
Created April 18, 2014 10:27
fgeorgatos@gaia-59:~: $ module avail
----------------------------------------- /opt/apps/HPCBIOS.20131224/modules/bio ------------------------------------------
ABySS/1.3.4-goolf-1.4.10-Python-2.7.3 Mothur/1.30.2-ictce-5.3.0
ABySS/1.3.4-ictce-5.3.0-Python-2.7.3 Mothur/1.30.2-ictce-5.3.0-biodeps-1.6
ALLPATHS-LG/46968-goolf-1.4.10 MrBayes/3.1.2-goolf-1.4.10
AMOS/3.1.0-goolf-1.4.10 MrBayes/3.1.2-ictce-5.3.0
AMOS/3.1.0-ictce-5.3.0 MrBayes/3.2.0-ictce-5.3.0
BEDTools/2.17.0-goolf-1.4.10 Oases/0.2.08-goolf-1.4.10
BEDTools/2.18.1-goolf-1.4.10 Oases/0.2.08-ictce-5.3.0
@fgeorgatos
fgeorgatos / icc-2013_sp1.2.144_partial.log
Created May 16, 2014 12:47
(partial) EasyBuild log for failed build of /tmp/test24/easybuild-easyconfigs/easybuild/easyconfigs/i/icc/icc-2013_sp1.2.144.eb (PR #867)
== 2014-05-16 14:47:25,376 main.EB_icc INFO This is EasyBuild 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575 (framework: 1.13.0dev-r5df522a8c90862a11a8512edf8fa6983e610ac78, easyblocks: 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575) on host gaia-19.
== 2014-05-16 14:47:25,377 main.EB_icc INFO Init completed for application name icc version 2013_sp1.2.144
== 2014-05-16 14:47:25,386 main.easyblock.<module> INFO Obtained application instance of for icc (easyblock: None)
== 2014-05-16 14:47:25,388 main.EB_icc INFO building and installing icc/2013_sp1.2.144...
== 2014-05-16 14:47:25,388 main.EB_icc INFO fetching files...
== 2014-05-16 14:47:25,388 main.EB_icc INFO Starting fetch step
== 2014-05-16 14:47:25,391 main.EB_icc INFO Running method fetch_step part of step fetch
== 2014-05-16 14:47:25,391 main.EB_icc WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-16 14:47:25,424 main.EB_icc ERROR EasyBuild crashed with an error (at easy
@fgeorgatos
fgeorgatos / ifort-2013_sp1.2.144_partial.log
Created May 16, 2014 12:47
(partial) EasyBuild log for failed build of /tmp/test24/easybuild-easyconfigs/easybuild/easyconfigs/i/ifort/ifort-2013_sp1.2.144.eb (PR #867)
== 2014-05-16 14:47:29,057 main.EB_ifort INFO This is EasyBuild 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575 (framework: 1.13.0dev-r5df522a8c90862a11a8512edf8fa6983e610ac78, easyblocks: 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575) on host gaia-19.
== 2014-05-16 14:47:29,057 main.EB_ifort INFO Init completed for application name ifort version 2013_sp1.2.144
== 2014-05-16 14:47:29,058 main.easyblock.<module> INFO Obtained application instance of for ifort (easyblock: None)
== 2014-05-16 14:47:29,059 main.EB_ifort INFO building and installing ifort/2013_sp1.2.144...
== 2014-05-16 14:47:29,060 main.EB_ifort INFO fetching files...
== 2014-05-16 14:47:29,060 main.EB_ifort INFO Starting fetch step
== 2014-05-16 14:47:29,063 main.EB_ifort INFO Running method fetch_step part of step fetch
== 2014-05-16 14:47:29,063 main.EB_ifort WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-16 14:47:29,070 main.EB_ifort ERROR EasyBuild crashed
@fgeorgatos
fgeorgatos / impi-4.1.3.049_partial.log
Created May 16, 2014 12:47
(partial) EasyBuild log for failed build of /tmp/test24/easybuild-easyconfigs/easybuild/easyconfigs/i/impi/impi-4.1.3.049.eb (PR #867)
== 2014-05-16 14:47:31,232 main.EB_impi INFO This is EasyBuild 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575 (framework: 1.13.0dev-r5df522a8c90862a11a8512edf8fa6983e610ac78, easyblocks: 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575) on host gaia-19.
== 2014-05-16 14:47:31,233 main.EB_impi INFO Init completed for application name impi version 4.1.3.049
== 2014-05-16 14:47:31,233 main.easyblock.<module> INFO Obtained application instance of for impi (easyblock: None)
== 2014-05-16 14:47:31,235 main.EB_impi INFO building and installing impi/4.1.3.049...
== 2014-05-16 14:47:31,235 main.EB_impi INFO fetching files...
== 2014-05-16 14:47:31,235 main.EB_impi INFO Starting fetch step
== 2014-05-16 14:47:31,238 main.EB_impi INFO Running method fetch_step part of step fetch
== 2014-05-16 14:47:31,238 main.EB_impi WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-16 14:47:31,246 main.EB_impi ERROR EasyBuild crashed with an error (at eas
@fgeorgatos
fgeorgatos / imkl-11.1.2.144_partial.log
Created May 16, 2014 12:47
(partial) EasyBuild log for failed build of /tmp/test24/easybuild-easyconfigs/easybuild/easyconfigs/i/imkl/imkl-11.1.2.144.eb (PR #867)
== 2014-05-16 14:47:33,704 main.EB_imkl INFO This is EasyBuild 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575 (framework: 1.13.0dev-r5df522a8c90862a11a8512edf8fa6983e610ac78, easyblocks: 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575) on host gaia-19.
== 2014-05-16 14:47:33,704 main.EB_imkl INFO Init completed for application name imkl version 11.1.2.144
== 2014-05-16 14:47:33,705 main.easyblock.<module> INFO Obtained application instance of for imkl (easyblock: None)
== 2014-05-16 14:47:33,706 main.EB_imkl INFO building and installing imkl/11.1.2.144...
== 2014-05-16 14:47:33,706 main.EB_imkl INFO fetching files...
== 2014-05-16 14:47:33,707 main.EB_imkl INFO Starting fetch step
== 2014-05-16 14:47:33,709 main.EB_imkl INFO Running method fetch_step part of step fetch
== 2014-05-16 14:47:33,710 main.EB_imkl WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-16 14:47:33,717 main.EB_imkl ERROR EasyBuild crashed with an error (at e
@fgeorgatos
fgeorgatos / ictce-6.2.5_partial.log
Created May 16, 2014 12:47
(partial) EasyBuild log for failed build of /tmp/test24/easybuild-easyconfigs/easybuild/easyconfigs/i/ictce/ictce-6.2.5.eb (PR #867)
== 2014-05-16 14:47:38,548 main.Toolchain INFO This is EasyBuild 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575 (framework: 1.13.0dev-r5df522a8c90862a11a8512edf8fa6983e610ac78, easyblocks: 1.13.0dev-r015d20ec38e6bb654bb395798a3e23d6f80fb575) on host gaia-19.
== 2014-05-16 14:47:38,548 main.Toolchain INFO Init completed for application name ictce version 6.2.5
== 2014-05-16 14:47:38,548 main.easyblock.<module> INFO Obtained application instance of for ictce (easyblock: Toolchain)
== 2014-05-16 14:47:38,550 main.Toolchain INFO building and installing ictce/6.2.5...
== 2014-05-16 14:47:38,550 main.Toolchain INFO fetching files...
== 2014-05-16 14:47:38,551 main.Toolchain INFO Starting fetch step
== 2014-05-16 14:47:38,553 main.Toolchain INFO Running method fetch_step part of step fetch
== 2014-05-16 14:47:38,553 main.Toolchain WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2014-05-16 14:47:38,554 main.Toolchain INFO no sources provided
== 2
@fgeorgatos
fgeorgatos / easybuild_test_report_easyconfigs_pr867_20144716-UTC-12-47-51.md
Created May 16, 2014 12:47
EasyBuild test report for easyconfigs PR #867

Test report for easybuilders/easybuild-easyconfigs#867

Test result

Build succeeded for 1 out of 7 (2 easyconfigs in this PR)

Overview of tested easyconfigs (in order)