Fidel Ramirez fidelram
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fidelram
/ marker_genes_visualization.ipynb
Last active
March 6, 2019 07:34
example visualization of marker genes in clusters
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fidelram
/ make_hicexplore_spiral_plots.py
Created
May 3, 2017 07:36
Code to create the images needed to compose the hicExplorer spiral tracks (http://hicexplorer.readthedocs.io/en/latest/_images/hicex2.png). Once the plots are generated they need to be put together using GIMP, Photoshop, or similar program. To run, HiCExplorer and ImageMagick need to be installed
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| import sys | |
| import os | |
| import hicexplorer.trackPlot | |
| dpi = 350 | |
| #dpi = 50 | |
| increment = int(1.0e6) | |
| start = int(3e6) | |
| frac_decrease = 0.15 # fraction of decrease per image |