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Last active July 7, 2020 07:19
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Practical demonstration of SimpleImputer with CV
# import required libraries
from sklearn.ensemble import RandomForestClassifier # can be any classifier of your choice
from sklearn.impute import SimpleImputer
from sklearn.model_selection import cross_val_score
from sklearn.model_selection import RepeatedStratifiedKFold
from sklearn.pipeline import Pipeline
# define modeling pipeline
model = RandomForestClassifier() # can be any model that you want to use
imputer = SimpleImputer(strategy='mean') #other allowed imputation strategies can also be used
pipeline = Pipeline(steps=[('i', imputer), ('m', model)])
# define cross-validation criteria
cv = RepeatedStratifiedKFold(n_splits=10, n_repeats=3, random_state=1)
# fit and evaluate the model defined in pipeline with cross-validation as defined in cv
scores = cross_val_score(pipeline, X, y, scoring='accuracy', cv=cv) #use any scoring parameter of your choice
# print the mean accuracy score
print('Mean Accuracy: %.3f' % (np.mean(scores)))
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