A workflowized version of the query in NCATSTranslator/testing#178

subutexDryMouthWorkflow.json

{
  "workflow": [
    {
      "id": "fill"
    },
    {
      "id": "overlay_compute_ngd",
      "parameters": {
        "virtual_relation_label": "NGD1",
        "qnode_keys": [
          "n00",
          "n01"
        ]
      }
    },
    {
      "id": "overlay_compute_ngd",
      "parameters": {
        "virtual_relation_label": "NGD2",
        "qnode_keys": [
          "n01",
          "n02"
        ]
      }
    },
    {
      "id": "overlay_fisher_exact_test",
      "parameters": {
        "subject_qnode_key": "n00",
        "object_qnode_key": "n01",
        "virtual_relation_label": "FET1"
      }
    },
    {
      "id": "overlay_fisher_exact_test",
      "parameters": {
        "subject_qnode_key": "n01",
        "object_qnode_key": "n02",
        "virtual_relation_label": "FET2"
      }
    },
    {
      "id": "complete_results"
    },
    {
      "id": "score"
    },
    {
      "id": "sort_results_score",
      "parameters": {
        "ascending_or_descending": "descending"
      }
    }
  ],
  "message": {
    "query_graph": {
      "edges": {
        "e00": {
          "subject": "n00",
          "object": "n01",
          "predicates": [
            "biolink:related_to"
          ]
        },
        "e01": {
          "subject": "n01",
          "object": "n02",
          "predicates": [
            "biolink:related_to"
          ]
        }
      },
      "nodes": {
        "n00": {
          "ids": [
            "PUBCHEM.COMPOUND:644073"
          ],
          "categories": [
            "biolink:ChemicalEntity"
          ]
        },
        "n01": {
          "categories": [
            "biolink:NamedThing"
          ]
        },
        "n02": {
          "ids": [
            "HP:0000217"
          ],
          "categories": [
            "biolink:DiseaseOrPhenotypicFeature"
          ]
        }
      }
    }
  }
}