RNArtist sample file

gistfile1.kts

import io.github.fjossinet.rnartist.core.*

 rnartist {
	ss {
		 bn {
			 seq = "UCUUUCGUUUAUCAGGUCCGUCGCUGGGCUUUCCGUAAGAUUCUCACGUCGAAUGGUGUUCGGAGACUGAACUUUUUUAGCUUUAUGAGGGGGGUUACAGACUUCCGUCUGCUACGUGCGGGGGAACCGUACCACUGUCGGAUGUGGUCCCUUGCGCUCAAGGUGCUGCGACGCGCAGGUGCGUGAUCCAGAUAGGCAACACCCAUAUCAAUGCUAUCUGGAGGUAGUAUUGAUAGCCGUGGCUGGCUAUGUGUUUUGUGCUGAUAACCAUCAGACGGUGCCGGU"
			 value = "(((..(((..(((..(((((....))))).(((..(((..(((..(((((....)))))..)))..(((((....)))))..)))...))).)))..(((((....)))))..)))...)))...(((..(((.(((..(((..(((..(((((....)))))..)))..(((((....)))))..)))...)))...(((..(((..(((..(((((....)))))..)))..(((((....)))))..)))...))).(((((....)))))..)))...)))"
		}
	}
	 theme {
		 details_lvl = 5
		 color {
			 value = "#800080"
			 type = "R"
		}
		 color {
			 value = "#ffcc80"
			 type = "Y"
		}
		 color {
			 value = "#000000"
			 type = "y"
		}
		 color {
			 value = "#99cc99"
			 location {
				 145 to 168
			}
		}
		 color {
			 value = "#b31a1a"
			 location {
				 199 to 235
				 248 to 259
			}
		}
		 hide {
			 location {
				 38 to 83
			}
			 type = "N n"
		}
		 hide {
			 location {
				 98 to 111
			}
			 type = "R r"
		}
		 hide {
			 location {
				 235 to 239
				 244 to 248
			}
			 type = "N n"
		}
		 hide {
			 location {
				 145 to 168
			}
			 type = "helix junction"
		}
		 hide {
			 location {
				 199 to 235
				 248 to 259
			}
			 type = "N n interaction_symbol"
		}
		 line {
			 type = "phosphodiester_bond"
			 value = 2.2
		}
		 line {
			 location {
				 145 to 168
			}
			 value = 5.0
		}
		 line {
			 location {
				 199 to 235
				 248 to 259
			}
			 type = "secondary_interaction phosphodiester_bond interaction_symbol"
			 value = 5.0
		}
	}
	 layout {
		 junction {
			 type = 3
			 out_ids = "wnw n"
		}
		 junction {
			 location {
				 206 to 209
				 232 to 235
				 248 to 251
			}
			 out_ids = "n e"
		}
	}
}