Created
June 15, 2012 12:40
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Performing a remote Blast
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| wget "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.2.26+-x64-linux.tar.gz" | |
| tar -xzvf ncbi-blast-2.2.26+-x64-linux.tar.gz | |
| ncbi-blast-2.2.26+/bin/blastn -remote -query your_fasta_file.fasta -out blast_results.txt -db nr | |
| grep "^>" blast_results.txt | wc -l | |
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