RNA 2D loaded from a local file and now described entirely in the script. Anybody can load it without the original file.

rnartist.kts

import io.github.fjossinet.rnartist.core.*

 rnartist {
	 ss {
		 rna {
		 	seq = "gaggaaaguccgggcUAGCACACACCUUAUGGGUGUGUAGUGUUUGUGCUAAGGGAAAUCAUAACCUUAGGUAUGUUGUAUAAACAUAACGGCAAACUAGUUAUAGCUAAGGUGUUUCACUACGUUAUAACUUAAAUUAAAGUGCCACAGAGACGAAUCUAUUUAGAAAUAAAUAGAGUGAAACGCGGUAAACCCCUCAAGCUAGCAACCCAAAUUAGGUAGGGGCACAUGAUGUGUAGCAAUACAACAUCAUGCAAGAUUUGAAUCUUGAGAUUAAUAGUCACAAAAGAAGAAAUUCUUUacagaacgcggcuua"
		 	name = "A"
		}
		 helix {
		 	name = "H1"
			 location {
			 	6 to 8
			 	313 to 315
			}
		}
		 helix {
		 	name = "H2"
			 location {
			 	10 to 14
			 	308 to 312
			}
		}
		 helix {
		 	name = "H3"
			 location {
			 	15 to 19
			 	201 to 205
			}
		}
		 helix {
		 	name = "H4"
			 location {
			 	20 to 25
			 	33 to 38
			}
		}
		 helix {
		 	name = "H5"
			 location {
			 	44 to 48
			 	196 to 200
			}
		}
		 helix {
		 	name = "H6"
			 location {
			 	49 to 54
			 	65 to 70
			}
		}
		 helix {
		 	name = "H7"
			 location {
			 	72 to 77
			 	83 to 88
			}
		}
		 helix {
		 	name = "H8"
			 location {
			 	91 to 92
			 	194 to 195
			}
		}
		 helix {
		 	name = "H9"
			 location {
			 	99 to 102
			 	129 to 132
			}
		}
		 helix {
		 	name = "H10"
			 location {
			 	111 to 114
			 	118 to 121
			}
		}
		 helix {
		 	name = "H11"
			 location {
			 	142 to 143
			 	192 to 193
			}
		}
		 helix {
		 	name = "H12"
			 location {
			 	144 to 146
			 	187 to 189
			}
		}
		 helix {
		 	name = "H13"
			 location {
			 	158 to 165
			 	170 to 177
			}
		}
		 helix {
		 	name = "H14"
			 location {
			 	209 to 211
			 	222 to 224
			}
		}
		 helix {
		 	name = "H15"
			 location {
			 	228 to 234
			 	248 to 254
			}
		}
		 helix {
		 	name = "H16"
			 location {
			 	255 to 260
			 	265 to 270
			}
		}
		 helix {
		 	name = "H17"
			 location {
			 	286 to 291
			 	296 to 301
			}
		}
	}
	 theme {
		 details {
			 value = 3
		}
		 details {
			 value = 2
			 location {
				 91 to 195
			}
		}
		 details {
			 value = 1
			 location {
				 228 to 254
			}
		}
		 details {
			 value = 1
			 location {
				 209 to 224
			}
		}
		 details {
			 value = 1
			 location {
				 14 to 15
				 205 to 209
				 224 to 228
				 254 to 255
				 270 to 286
				 301 to 308
			}
		}
		 color {
			 value = "#301a4b"
			 type = "A"
		}
		 color {
			 value = "#ffffff"
			 type = "a"
		}
		 color {
			 value = "#6db1bf"
			 type = "U"
		}
		 color {
			 value = "#ffffff"
			 type = "u"
		}
		 color {
			 value = "#ffeaec"
			 type = "G"
		}
		 color {
			 value = "#000000"
			 type = "g"
		}
		 color {
			 value = "#f39a9d"
			 type = "C"
		}
		 color {
			 value = "#ffffff"
			 type = "c"
		}
		 color {
			 value = "#b3b34d"
			 location {
				 91 to 195
			}
		}
		 color {
			 value = "#ff00ff"
			 location {
				 14 to 15
				 205 to 255
				 270 to 286
				 301 to 308
			}
		}
		 color {
			 value = "#999999"
			 location {
				 255 to 270
				 286 to 301
			}
			 type = "N"
		}
		 line {
			 location {
				 91 to 195
			}
			 type = "helix junction single_strand N secondary_interaction phosphodiester_bond tertiary_interaction interaction_symbol"
			 value = 2.0
		}
		 line {
			 location {
				 91 to 195
			}
			 type = "phosphodiester_bond"
			 value = 5.0
		}
		 line {
			 location {
				 14 to 15
				 205 to 255
				 270 to 286
				 301 to 308
			}
			 type = "helix junction"
			 value = 2.0
		}
		 line {
			 location {
				 255 to 270
				 286 to 301
			}
			 type = "N phosphodiester_bond"
			 value = 4.0
		}
	}
	 layout {
		 junction {
			 type = 3
			 location {
				 92 to 99
				 132 to 142
				 193 to 194
			}
			 out_ids = "nne ene"
		}
		 junction {
			 type = 6
			 location {
				 14 to 15
				 205 to 209
				 224 to 228
				 254 to 255
				 270 to 286
				 301 to 308
			}
			 out_ids = "w nw nnw nne ene"
		}
		 junction {
			 type = 4
			 location {
				 48 to 49
				 70 to 72
				 88 to 91
				 195 to 196
			}
			 out_ids = "wsw nw ne"
		}
	}
}

rnartist.svg