Quite elaborate plot for snRNA SNORA75 (RF00072) in Salmo gairdneri (AJ009730.1)

rnartist.kts

import io.github.fjossinet.rnartist.core.*

 rnartist {
	ss {
		 rfam {
			 id = "RF00072"
			 name = "AJ009730.1/1-133"
		}
	}
	 theme {
		 details {
			 value = 3
		}
		 details {
			 value = 2
			 type = "single_strand junction"
		}
		 details {
			 value = 4
			 location {
				 89 to 94
				 102 to 107
			}
		}
		 color {
			 value = "#2f4858"
			 type = "A"
		}
		 color {
			 value = "#ffffff"
			 type = "a"
		}
		 color {
			 value = "#33658a"
			 type = "U"
		}
		 color {
			 value = "#ffffff"
			 type = "u"
		}
		 color {
			 value = "#86bbd8"
			 type = "G"
		}
		 color {
			 value = "#ffffff"
			 type = "g"
		}
		 color {
			 value = "#f6ae2d"
			 type = "C"
		}
		 color {
			 value = "#000000"
			 type = "c"
		}
		 color {
			 value = "#ff0000"
			 location {
				 74 to 89
				 107 to 121
			}
			 type = "A"
		}
		 color {
			 value = "#4d804d"
			 location {
				 74 to 89
				 107 to 121
			}
			 type = "G"
		}
		 show {
			 location {
				 74 to 89
				 107 to 121
			}
			 type = "R r"
		}
		 line {
			 type = "N"
			 value = 1.0
		}
		 line {
			 location {
				 1 to 2
				 8 to 15
				 17 to 21
				 25 to 33
				 37 to 43
				 45 to 53
				 59 to 68
				 74 to 89
				 94 to 102
				 107 to 121
				 127 to 133
			}
			 type = "phosphodiester_bond"
			 value = 5.0
		}
	}
	 layout {
		 junction {
			 type = 2
			 location {
				 74 to 89
				 107 to 121
			}
			 out_ids = "n"
		}
		 junction {
			 type = 2
			 location {
				 17 to 21
				 37 to 43
			}
			 out_ids = "e"
		}
		 junction {
			 type = 2
			 location {
				 14 to 15
				 45 to 49
			}
			 out_ids = "w"
		}
	}
}

rnartist.svg