Matrices

_pilingjs.json

{
  "title": "Matrices",
  "subtitle": "Hi-C Loop Patterns",
  "thumbnail": "https://user-images.githubusercontent.com/932103/90644105-5b6e7900-e202-11ea-8fa3-3f9c4c469f19.jpg"
}

aggregators.js

import { createMatrixCoverAggregator, createMatrixPreviewAggregator } from 'piling.js';

const coverAggregator = createMatrixCoverAggregator('mean');
const previewAggregator = createMatrixPreviewAggregator('mean');

export { coverAggregator, previewAggregator };

data.json

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renderers.js

import { interpolateOrRd, interpolateRdPu, interpolateRainbow } from 'd3-scale-chromatic';
import { createMatrixRenderer } from 'piling.js';

const darkMode = false;

function rgbStr2rgba(rgbStr, alpha = 1) {
  return [
    ...rgbStr
      .match(/rgb\((\d+),\s*(\d+),\s*(\d+)\)/)
      .slice(1, 4)
      .map((x) => parseInt(x, 10) / 256),
    alpha,
  ];
}

function createColorMap(interpolator, numColors = 512, invert = false) {
  let interpolatorFn;

  switch (interpolator) {
    case 'red':
      interpolatorFn = interpolateOrRd;
      break;

    case 'rainbow':
      interpolatorFn = interpolateRainbow;
      break;

    case 'purple':
    default:
      interpolatorFn = interpolateRdPu;
      break;
  }

  const colorMap = new Array(numColors)
    .fill(0)
    .map((x, i) =>
      rgbStr2rgba(
        interpolatorFn(Math.abs((invert * numColors - i) / numColors))
      )
    );

  colorMap[0] = [0, 0, 0, 0]; // Transparent

  return colorMap;
}

const coverRenderer = createMatrixRenderer({
  colorMap: createColorMap('red', 512, darkMode),
});

let colorMap = createColorMap('purple', 512, darkMode);

const itemRenderer = createMatrixRenderer({ colorMap });
const previewRenderer = createMatrixRenderer({
  colorMap,
  shape: [1, 16],
});

export {
  itemRenderer,
  coverRenderer,
  previewRenderer,
}

styles.js

import { createUmap } from 'piling.js';

const style = {
  cellSize: 64,
  pileCellAlignment: 'center',
  pileScale: (pile) => 1 + Math.min((pile.items.length - 1) * 0.05, 0.5),
  pileOrderItems: (pileState) => [...pileState.items].sort((a, b) => a - b),
  previewScaling: (pile) => [
    1,
    Math.max(0.1, 1 - (pile.items.length - 2) / 20),
  ],
  previewOffset: 1,
  previewPadding: 2,
  previewSpacing: (pile) => Math.max(0, 2 - (pile.items.length - 2) / 20),
  // Technically not a style but we have to set it somewhere
  dimensionalityReducer: createUmap(),
};

export default style;