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flekschas/rao-2014-gm12878-mbol-1kb-mres-chr4-tads-hipiler-v140.json

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HiPiler Example: TAD calls of Arrowhead for chromosome 4 from Rao et al. (2014) GM12878. TADs are normalized to 60x60 bins to support piling, the diagonal is excluded for better of-diagonal patterns, and the matrix is capped at the 99-percentile against outliers. See https://flekschas.github.io/hipiler/ for a live demo.
Raw
rao-2014-gm12878-mbol-1kb-mres-chr4-tads-hipiler-v140.json
{
"fgm": {
"fragmentsServer": "//higlass.io/api/v1/",
"fragmentsPrecision": 2,
"fragmentsDims": 60,
"fragmentsPadding": 50,
"fragmentsBaseRes": 1000,
"fragmentsPercentile": 99,
"fragmentsIgnoreDiags": 1,
"fragments": [
["chrom1", "start1", "end1", "strand1", "chrom2", "start2", "end2", "strand2", "dataset", "zoomOutLevel", "corner-score", "U-var", "L-var", "U-sign", "L-sign"],
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