florin-chelaru

florin-chelaru

console.log('New worker started');

florin-chelaru

#!/bin/bash

function ceil {
    echo "$1" | awk 'function ceil(v) { return (v == int(v)) ? v : int(v)+1 } { printf "%d", ceil($1) } '
}

input=$1
filename=$(basename $input)
linecount=$(wc -l $input | cut -f1 -d' ')

florin-chelaru

#!/bin/bash

# input is a file containing a list of paths (generated with extract_all_paths.sh)
input=$1

# get the id of the task, generated by GridEngine
taskId=$SGE_TASK_ID

# the number of files to be processed in one run
batchSize=$2

florin-chelaru

#!/bin/bash

function showHelp {
    printf "\nUsage: $1 [OPTION]... [IGNORES]...\n"
    printf "Valid options:\n"
    printf "  -h\tThis help message\n"
    printf "  -d\tTarget directory\n"
    printf "  -o\tOutput file\n"
    printf "  -i=[list of dirs to ignore] (must be the last option in the command)\n"
    printf "\n"

florin-chelaru

@transition-speed: 0.5s;
@light-gray: #ddd;
@medium-gray: #808080;
@dark-gray: #494949;
@transparent-light-gray: rgba(0, 0, 0, 0.025);
@transparent-gray: rgba(0, 0, 0, 0.05);
@transparent-dark-gray: rgba(0, 0, 0, 0.075);
@item-max-height: 120px;

florin-chelaru

/**
 * Created by Florin Chelaru ( florinc [at] umd [dot] edu )
 * Date: 10/9/13
 * Time: 11:13 AM
 */

/**
 * Overrides the default configuration settings for EpiViz
 */
epiviz.Config.SETTINGS = {

florin-chelaru

/**
 * Created by Florin Chelaru ( florinc [at] umd [dot] edu )
 * Date: 10/9/13
 * Time: 11:13 AM
 */

/**
 * Overrides the default configuration settings for EpiViz
 */
epiviz.Config.SETTINGS = {

florin-chelaru

var heatmapCustomSettings = epiviz.Config.SETTINGS.chartCustomSettings['epiviz.plugins.charts.HeatmapPlot'];
if (!heatmapCustomSettings) {
 epiviz.Config.SETTINGS.chartCustomSettings['epiviz.plugins.charts.HeatmapPlot'] = {};
}
heatmapCustomSettings['showDendrogramLabels'] = false;
heatmapCustomSettings['dendrogramRatio'] = 0.1;
heatmapCustomSettings['clusteringAlg'] = 'agglomerative';

florin-chelaru

epiviz.Config.SETTINGS.chartTypes.push('epiviz.plugins.charts.MyTrackType');