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June 5, 2016 20:11
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| fonnescj on Marichal.local in ~ | |
| $ pip install -U git+https://github.com/numpy/numpy.git | |
| Collecting git+https://github.com/numpy/numpy.git | |
| Cloning https://github.com/numpy/numpy.git to /var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-ko75h2ub-build | |
| Installing collected packages: numpy | |
| Found existing installation: numpy 1.12.0.dev0+cc51ba8 | |
| Uninstalling numpy-1.12.0.dev0+cc51ba8: | |
| Successfully uninstalled numpy-1.12.0.dev0+cc51ba8 | |
| Running setup.py install for numpy ... done | |
| Successfully installed numpy-1.12.0.dev0+f65b233 | |
| fonnescj on Marichal.local in ~ | |
| $ pip install -U git+https://github.com/scipy/scipy.git | |
| Collecting git+https://github.com/scipy/scipy.git | |
| Cloning https://github.com/scipy/scipy.git to /var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build | |
| Installing collected packages: scipy | |
| Found existing installation: scipy 0.17.0 | |
| Uninstalling scipy-0.17.0: | |
| Successfully uninstalled scipy-0.17.0 | |
| Running setup.py install for scipy ... error | |
| Complete output from command /Users/fonnescj/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-x0vdohp2-record/install-record.txt --single-version-externally-managed --compile: | |
| Cythonizing sources | |
| Processing scipy/cluster/_hierarchy.pyx | |
| Processing scipy/cluster/_vq.pyx | |
| Processing scipy/interpolate/_ppoly.pyx | |
| Processing scipy/interpolate/interpnd.pyx | |
| Processing scipy/io/matlab/mio5_utils.pyx | |
| Processing scipy/io/matlab/mio_utils.pyx | |
| Processing scipy/io/matlab/streams.pyx | |
| Processing scipy/linalg/_decomp_update.pyx.in | |
| Processing scipy/linalg/_solve_toeplitz.pyx | |
| Processing scipy/linalg/cython_blas.pyx | |
| Processing scipy/linalg/cython_lapack.pyx | |
| Processing scipy/ndimage/src/_ni_label.pyx | |
| Processing scipy/optimize/_group_columns.pyx | |
| Processing scipy/optimize/_lsq/givens_elimination.pyx | |
| Processing scipy/signal/_max_len_seq_inner.pyx | |
| Processing scipy/signal/_spectral.pyx | |
| Processing scipy/signal/_upfirdn_apply.pyx | |
| Processing scipy/sparse/_csparsetools.pyx.in | |
| Processing scipy/sparse/csgraph/_min_spanning_tree.pyx | |
| Processing scipy/sparse/csgraph/_reordering.pyx | |
| Processing scipy/sparse/csgraph/_shortest_path.pyx | |
| Processing scipy/sparse/csgraph/_tools.pyx | |
| Processing scipy/sparse/csgraph/_traversal.pyx | |
| Processing scipy/spatial/ckdtree.pyx | |
| Processing scipy/spatial/qhull.pyx | |
| Processing scipy/special/_comb.pyx | |
| Processing scipy/special/_ellip_harm_2.pyx | |
| Processing scipy/special/_ufuncs.pyx | |
| Processing scipy/special/_ufuncs_cxx.pyx | |
| Processing scipy/stats/_stats.pyx | |
| lapack_opt_info: | |
| lapack_mkl_info: | |
| mkl_info: | |
| libraries mkl,vml,guide not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| NOT AVAILABLE | |
| openblas_lapack_info: | |
| libraries openblas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| atlas_3_10_threads_info: | |
| Setting PTATLAS=ATLAS | |
| libraries tatlas,tatlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries lapack_atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries tatlas,tatlas not found in /usr/local/lib | |
| libraries lapack_atlas not found in /usr/local/lib | |
| libraries tatlas,tatlas not found in /usr/lib | |
| libraries lapack_atlas not found in /usr/lib | |
| <class 'numpy.distutils.system_info.atlas_3_10_threads_info'> | |
| NOT AVAILABLE | |
| atlas_3_10_info: | |
| libraries satlas,satlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries lapack_atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries satlas,satlas not found in /usr/local/lib | |
| libraries lapack_atlas not found in /usr/local/lib | |
| libraries satlas,satlas not found in /usr/lib | |
| libraries lapack_atlas not found in /usr/lib | |
| <class 'numpy.distutils.system_info.atlas_3_10_info'> | |
| NOT AVAILABLE | |
| atlas_threads_info: | |
| Setting PTATLAS=ATLAS | |
| libraries ptf77blas,ptcblas,atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries lapack_atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib | |
| libraries lapack_atlas not found in /usr/local/lib | |
| libraries ptf77blas,ptcblas,atlas not found in /usr/lib | |
| libraries lapack_atlas not found in /usr/lib | |
| <class 'numpy.distutils.system_info.atlas_threads_info'> | |
| NOT AVAILABLE | |
| atlas_info: | |
| libraries f77blas,cblas,atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries lapack_atlas not found in /Users/fonnescj/anaconda3/lib | |
| libraries f77blas,cblas,atlas not found in /usr/local/lib | |
| libraries lapack_atlas not found in /usr/local/lib | |
| libraries f77blas,cblas,atlas not found in /usr/lib | |
| libraries lapack_atlas not found in /usr/lib | |
| <class 'numpy.distutils.system_info.atlas_info'> | |
| NOT AVAILABLE | |
| FOUND: | |
| extra_compile_args = ['-msse3'] | |
| extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] | |
| define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)] | |
| Running from scipy source directory. | |
| Splitting linalg.interpolative Fortran source files | |
| /Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/system_info.py:645: UserWarning: Specified path /usr/local/include/python3.5m is invalid. | |
| warnings.warn('Specified path %s is invalid.' % d) | |
| /Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/system_info.py:645: UserWarning: Specified path /usr/include/python3.5m is invalid. | |
| warnings.warn('Specified path %s is invalid.' % d) | |
| blas_opt_info: | |
| blas_mkl_info: | |
| libraries mkl,vml,guide not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| blis_info: | |
| libraries blis not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| openblas_info: | |
| libraries openblas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| atlas_3_10_blas_threads_info: | |
| Setting PTATLAS=ATLAS | |
| libraries tatlas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| atlas_3_10_blas_info: | |
| libraries satlas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| atlas_blas_threads_info: | |
| Setting PTATLAS=ATLAS | |
| libraries ptf77blas,ptcblas,atlas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| atlas_blas_info: | |
| libraries f77blas,cblas,atlas not found in ['/Users/fonnescj/anaconda3/lib', '/usr/local/lib', '/usr/lib'] | |
| NOT AVAILABLE | |
| FOUND: | |
| extra_compile_args = ['-msse3', '-I/System/Library/Frameworks/vecLib.framework/Headers'] | |
| extra_link_args = ['-Wl,-framework', '-Wl,Accelerate'] | |
| define_macros = [('NO_ATLAS_INFO', 3), ('HAVE_CBLAS', None)] | |
| non-existing path in '/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/sparse': 'sparsetools/sparsetools_impl.h' | |
| non-existing path in '/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/sparse': 'sparsetools/bsr_impl.h' | |
| non-existing path in '/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/sparse': 'sparsetools/csc_impl.h' | |
| non-existing path in '/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/sparse': 'sparsetools/csr_impl.h' | |
| non-existing path in '/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/sparse': 'sparsetools/other_impl.h' | |
| Traceback (most recent call last): | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/npy_pkg_config.py", line 373, in read_config | |
| return _CACHE[pkgname] | |
| KeyError: 'npymath' | |
| During handling of the above exception, another exception occurred: | |
| Traceback (most recent call last): | |
| File "<string>", line 1, in <module> | |
| File "/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/setup.py", line 265, in <module> | |
| setup_package() | |
| File "/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/setup.py", line 262, in setup_package | |
| setup(**metadata) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/core.py", line 135, in setup | |
| config = configuration() | |
| File "/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/setup.py", line 182, in configuration | |
| config.add_subpackage('scipy') | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage | |
| caller_level = 2) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage | |
| caller_level = caller_level + 1) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py | |
| config = setup_module.configuration(*args) | |
| File "scipy/setup.py", line 22, in configuration | |
| config.add_subpackage('spatial') | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 1003, in add_subpackage | |
| caller_level = 2) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 972, in get_subpackage | |
| caller_level = caller_level + 1) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 909, in _get_configuration_from_setup_py | |
| config = setup_module.configuration(*args) | |
| File "/private/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/scipy/spatial/setup.py", line 80, in configuration | |
| extra_info=get_misc_info("npymath")) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 2171, in get_info | |
| pkg_info = get_pkg_info(pkgname, dirs) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/misc_util.py", line 2123, in get_pkg_info | |
| return read_config(pkgname, dirs) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/npy_pkg_config.py", line 375, in read_config | |
| v = _read_config_imp(pkg_to_filename(pkgname), dirs) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/npy_pkg_config.py", line 311, in _read_config_imp | |
| meta, vars, sections, reqs = _read_config(filenames) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/npy_pkg_config.py", line 294, in _read_config | |
| meta, vars, sections, reqs = parse_config(f, dirs) | |
| File "/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/distutils/npy_pkg_config.py", line 266, in parse_config | |
| raise PkgNotFound("Could not find file(s) %s" % str(filenames)) | |
| numpy.distutils.npy_pkg_config.PkgNotFound: Could not find file(s) ['/Users/fonnescj/anaconda3/lib/python3.5/site-packages/numpy/core/lib/npy-pkg-config/npymath.ini'] | |
| ---------------------------------------- | |
| Rolling back uninstall of scipy | |
| Command "/Users/fonnescj/anaconda3/bin/python -u -c "import setuptools, tokenize;__file__='/var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/setup.py';exec(compile(getattr(tokenize, 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-x0vdohp2-record/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /var/folders/z_/kgsm76k94s7_jhnkfydfnd380000gn/T/pip-yb2g0d12-build/ |
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