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#!/usr/bin/env bash

# Script initialization
script=$(basename "$0")
desc='Perform Born effective charges calculation, which are useful for
analyzing spontaneous polarization, using the Vienna Ab initio simulation
package, VASP.'

declare -iA errno
errno[EUNK]=1

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{
    "name" : "Mediafire Official Plugin",
    "version":"0.1",
    "description": "First Plugin Running!",
    "main": "main.rb",
    "repository": {
        "type": "git",
        "url": "https://github.com/kdragon/plugin.mdmplugin.git"
    },
    "require": [

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2012-06-24 14:07:47.653 MDMCoreData[1428:403] category: <MDMCategory: 0x7ffbd212da70> (entity: Category; id: 0x7ffbd212db00 <x-coredata:///Category/tF2FA1117-5B70-4B08-9C2C-96731C55BF622> ; data: {
    extensions =     (
        "0x7ffbd2135630 <x-coredata:///Extension/tF2FA1117-5B70-4B08-9C2C-96731C55BF623>",
        "0x7ffbd2137b80 <x-coredata:///Extension/tF2FA1117-5B70-4B08-9C2C-96731C55BF624>",
        "0x7ffbd2138950 <x-coredata:///Extension/tF2FA1117-5B70-4B08-9C2C-96731C55BF625>",
        "0x7ffbd2134a80 <x-coredata:///Extension/tF2FA1117-5B70-4B08-9C2C-96731C55BF626>"
    );
    label = Documents;
    location = "/Users/kdragon/Documents";
    objects =     (

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File "../getEnergy.py", line 59, in <module> 
   main() 
 File "../getEnergy.py", line 55, in main 
   csim.analyze([ energy ]) 
 File "/opt/Desmond_10/mmshare-v19108/lib/Linux-x86_64/lib/python2.6/site-packages/schrodinger/trajectory/desmondsimulation.py", line 425, in analyze 
   tool.processFrame(frame) 
 File "/opt/Desmond_10/mmshare-v19108/lib/Linux-x86_64/lib/python2.6/site-packages/schrodinger/application/desmond/energygroup.py", line 453, in processFrame 
   self._result.append(self._ega.getEnergyTimeSeries()[frame.getId()]) 
 File "/opt/Desmond_10/mmshare-v19108/lib/Linux-x86_64/lib/python2.6/site-packages/schrodinger/application/desmond/energygroup.py", line 212, in getEnergyTimeSeries 
   self._calcEnergy() 

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void APNpSeeker::run()
{
	while (walkable()) {

                QList<float> pointsInsideWindow = QList<float>();
		for (int i = left(); i < right(); ++i) {
		    pointsInsideWindow.append( points.at(i) );
		}

                float average = sum(pointsInsideWindow) / points.length();

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def generateMeasureAtomIdx(st, measures):
    measuresIdxs = []
    if not measures: return measuresIdxs
    
    for measure in measures.split(','):
        atoms, importance = measure.split('@')
        measureAttributes = { 'importance' : float(importance) }
        for i, atomSelection in enumerate(atoms.split('-')):
            atomAslExpr = shortAtomSelectionToAsl(atomSelection)
            measureAttributes['atom%s' % i] = analyze.evaluate_asl(st, atomAslExpr)[0]

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- (void)controlTextDidChange:(NSNotification *)notification

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[[NSNotificationCenter defaultCenter] addObserver:self 
                                         selector:@selector(textDidChange:) 
                                             name:NSControlTextDidChangeNotification
                                           object:textField];

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if (![NSApp isActive])
    [NSApp requestUserAttention:NSCriticalRequest];

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- (NSComparisonResult)compare:(id)object
{
    if ([[self identifier] isEqualToString:[object identifier]]) return NSOrderedSame;
    NSComparisonResult result = [[self identifier] compare:[object identifier]];
    if (result != NSOrderedSame) return result;
    return [[self fileName] compare:[object fileName]];
}