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frauzufall/ImageJ command line execution

Last active June 11, 2022 11:10
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ImageJ command line execution
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ImageJ command line execution
https://imagej.net/Scripting_Headless
Start a SciJava command from command line:
./ImageJ-linux64 --run org.scijava.plugins.commands.debug.DumpStack
.. headless:
./ImageJ-linux64 --headless --run org.scijava.plugins.commands.debug.DumpStack
Calling a script from command line:
./ImageJ-linux64 --ij2 --headless --console --run hello.py 'name1="Mr",name2="Mrs Kraken"'
ImageJ-win64.exe --ij2 --headless --console --run "PathTo/hello.py" "name1='Mr', name2='Kraken'"
A command with a parameter:
./ImageJ-linux64 --headless --run org.scijava.plugins.commands.io.OpenFile "inputFile='/home/random/blobs.tif'"
Getting the system information:
./ImageJ-linux64 --headless --run org.scijava.plugins.commands.debug.SystemInformation
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