fxcoudert/ORCID_HAL.py

## ORCID_HAL.py
# -*- coding: utf-8 -*-

import collections
import json
import orcid
import requests
import sys
import time


def retrieveFromORCID(auth_orcid):
    def findDOI(paper):
        for i in paper['external-ids']['external-id']:
            if i['external-id-type'] == 'doi':
                return i['external-id-value']
        return None

    api = orcid.PublicAPI(orcid_api_id, orcid_api_secret)
    token = api.get_search_token_from_orcid()
    try:
        record = api.read_record_public(auth_orcid, 'record', token)
        name = record['person']['name']
        works = api.read_record_public(auth_orcid, 'works', token)['group']
    except:
        return None, None, None

    # Store DOIs as keys in an ordered dict, with uppercase, to avoid duplicates
    doilist = collections.OrderedDict()
    for paper in works:
        doi = findDOI(paper)
        if doi:
            doilist[doi.upper()] = (doi, paper['work-summary'][0]['title']['title']['value'])

    return name["given-names"]["value"], name["family-name"]["value"], doilist


def HALfromDOI(doi):
    p = {'wt': 'json',
         'q': 'doiId_s:' + doi,
         'fl': 'openAccess_bool,docid,halId_s'}
    r = requests.get('http://api.archives-ouvertes.fr/search/', params=p)
    return r.json()


def papersAvailable(doilist):
    s = '<table>'
    s += '<tr><td>Title</td><td>DOI</td><td>In HAL?</td><td>Full text?</td></tr>'
    for doi, title in doilist.values():
        r = HALfromDOI(doi)

        hal = False
        oa = False
        if 'response' in r and r['response']['numFound'] > 0:
            hal = True
            oa = r['response']['docs'][0]['openAccess_bool']

        if hal:
            color = '#80d080' if oa else '#d0d080'
            halid = r['response']['docs'][0]['halId_s']
            hal = f'<a href="https://hal.archives-ouvertes.fr/{halid}/">+</a>'
            oa = '+' if oa else '–'
            oa = f'<a href="https://hal.archives-ouvertes.fr/{halid}/">{oa}</a>'
        else:
            color = '#d08080'
            hal = '–'
            oa = '+' if oa else '–'

        href = 'https://doi.org/' + doi
        s += f'<tr style="background-color: {color}"><td><a href="{href}">{title}</a></td><td><a href="{href}">{doi}</a></td>'
        s += f'<td style="text-align: center">{hal}</td><td style="text-align: center">{oa}</td></tr>'

    s += '</table>'
    return s


def auditORCID(auth_orcid):
    first_name, last_name, doilist = retrieveFromORCID(auth_orcid)
    if doilist:
        s = header(f'Papers for {first_name} {last_name} (ORCID: {auth_orcid})')
        s += papersAvailable(doilist)
        return s
    else:
        s = header('Error')
        s += f'ERROR: Could not find ORCID record for: {auth_orcid}'
        return s


def header(title):
    return f'''
<!DOCTYPE html>
<html lang="en">

<head>
  <title>{title}</title>

  <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
  <link rel="stylesheet" type="text/css" href="default.css" />
  <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
  <style>
  a {{
    text-decoration: none;
    color: black;
  }}
  table, th, td {{
    padding: 2px;
    font-size: 95%;
  }}
  </style>
</head>

<body>
<h1>{title}</h1>
    '''

def landingPage():
    s = header('Quickly check if your papers are on HAL')
    s += 'Enter your ORCID here:'
    s += '<form><input type="text" name="orcid" /><input type="submit" value="Submit"></form>'
    s += 'This can take up to 2 minutes, please wait after you click...'
    return s
	# -- coding: utf-8 --

	import collections
	import json
	import orcid
	import requests
	import sys
	import time


	def retrieveFromORCID(auth_orcid):
	def findDOI(paper):
	for i in paper['external-ids']['external-id']:
	if i['external-id-type'] == 'doi':
	return i['external-id-value']
	return None

	api = orcid.PublicAPI(orcid_api_id, orcid_api_secret)
	token = api.get_search_token_from_orcid()
	try:
	record = api.read_record_public(auth_orcid, 'record', token)
	name = record['person']['name']
	works = api.read_record_public(auth_orcid, 'works', token)['group']
	except:
	return None, None, None

	# Store DOIs as keys in an ordered dict, with uppercase, to avoid duplicates
	doilist = collections.OrderedDict()
	for paper in works:
	doi = findDOI(paper)
	if doi:
	doilist[doi.upper()] = (doi, paper['work-summary'][0]['title']['title']['value'])

	return name["given-names"]["value"], name["family-name"]["value"], doilist


	def HALfromDOI(doi):
	p = {'wt': 'json',
	'q': 'doiId_s:' + doi,
	'fl': 'openAccess_bool,docid,halId_s'}
	r = requests.get('http://api.archives-ouvertes.fr/search/', params=p)
	return r.json()


	def papersAvailable(doilist):
	s = '<table>'
	s += '<tr><td>Title</td><td>DOI</td><td>In HAL?</td><td>Full text?</td></tr>'
	for doi, title in doilist.values():
	r = HALfromDOI(doi)

	hal = False
	oa = False
	if 'response' in r and r['response']['numFound'] > 0:
	hal = True
	oa = r['response']['docs'][0]['openAccess_bool']

	if hal:
	color = '#80d080' if oa else '#d0d080'
	halid = r['response']['docs'][0]['halId_s']
	hal = f'<a href="https://hal.archives-ouvertes.fr/{halid}/">+</a>'
	oa = '+' if oa else '–'
	oa = f'<a href="https://hal.archives-ouvertes.fr/{halid}/">{oa}</a>'
	else:
	color = '#d08080'
	hal = '–'
	oa = '+' if oa else '–'

	href = 'https://doi.org/' + doi
	s += f'<tr style="background-color: {color}"><td><a href="{href}">{title}</a></td><td><a href="{href}">{doi}</a></td>'
	s += f'<td style="text-align: center">{hal}</td><td style="text-align: center">{oa}</td></tr>'

	s += '</table>'
	return s


	def auditORCID(auth_orcid):
	first_name, last_name, doilist = retrieveFromORCID(auth_orcid)
	if doilist:
	s = header(f'Papers for {first_name} {last_name} (ORCID: {auth_orcid})')
	s += papersAvailable(doilist)
	return s
	else:
	s = header('Error')
	s += f'ERROR: Could not find ORCID record for: {auth_orcid}'
	return s


	def header(title):
	return f'''
	<!DOCTYPE html>
	<html lang="en">

	<head>
	<title>{title}</title>

	<meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
	<link rel="stylesheet" type="text/css" href="default.css" />
	<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
	<style>
	a {{
	text-decoration: none;
	color: black;
	}}
	table, th, td {{
	padding: 2px;
	font-size: 95%;
	}}
	</style>
	</head>

	<body>
	<h1>{title}</h1>
	'''

	def landingPage():
	s = header('Quickly check if your papers are on HAL')
	s += 'Enter your ORCID here:'
	s += '<form><input type="text" name="orcid" /><input type="submit" value="Submit"></form>'
	s += 'This can take up to 2 minutes, please wait after you click...'
	return s