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R.utils failed install log
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| ------------------------------------------------- R.oo without specifing encoding in .Rprofile/ /etc/R/.Rprofile.site | |
| > install.packages('R.oo') | |
| Installing package into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 394545 bytes (385 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 385 Kb | |
| * installing *source* package ‘R.oo’ ... | |
| ** package ‘R.oo’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.oo) | |
| The downloaded source packages are in | |
| ‘/tmp/RtmpxJqAfM/downloaded_packages’ | |
| ------------------------------------------------- R.oo nonASCII in NEWS | |
| > install.packages("http://braju.com/R/xfer/20141210/R.oo/nonASCII-in-NEWS/R.oo_1.18.0.tar.gz") | |
| Installing package into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| trying URL 'http://braju.com/R/xfer/20141210/R.oo/nonASCII-in-NEWS/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 381588 bytes (372 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 372 Kb | |
| * installing *source* package ‘R.oo’ ... | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.oo) | |
| ------------------------------------------------- R.oo nonASCII in R | |
| > install.packages("http://braju.com/R/xfer/20141210/R.oo/nonASCII-in-R/R.oo_1.18.0.tar.gz") | |
| Installing package into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| trying URL 'http://braju.com/R/xfer/20141210/R.oo/nonASCII-in-R/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 381584 bytes (372 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 372 Kb | |
| * installing *source* package ‘R.oo’ ... | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Warning: S3 methods ‘$.BasicObject’, ‘$<-.BasicObject’, ‘[[.BasicObject’, ‘[[<-.BasicObject’, ‘as.character.BasicObject’, ‘attach.BasicObject’, ‘detach.BasicObject’, ‘equals.BasicObject’, ‘extend.BasicObject’, ‘getFields.BasicObject’, ‘getInstantiationTime.BasicObject’, ‘hasField.BasicObject’, ‘hashCode.BasicObject’, ‘isReferable.BasicObject’, ‘newInstance.BasicObject’, ‘objectSize.BasicObject’, ‘print.BasicObject’, ‘uses.character’, ‘$.Class’, ‘$<-.Class’, ‘[[.Class’, ‘[[<-.Class’, ‘argsToString.Class’, ‘as.character.Class’, ‘forName.Class’, ‘getDetails.Class’, ‘getFields.Class’, ‘getKnownSubclasses.Class’, ‘getMethods.Class’, ‘getName.Class’, ‘getPackage.Class’, ‘getRdDeclaration.Class’, ‘getRdHierarchy.Class’, ‘getRdMethods.Class’, ‘getStaticInstance.Class’, ‘getSuperclasses.Class’, ‘isAbstract.Class’, ‘isBeingCreated.Class’, ‘isDeprecated. [... truncated] | |
| * DONE (R.oo) | |
| ------------------------------------------------- R.oo LF | |
| > install.packages("http://braju.com/R/xfer/20141210/R.oo/LF/R.oo_1.18.0.tar.gz") | |
| Installing package into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| trying URL 'http://braju.com/R/xfer/20141210/R.oo/LF/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 380557 bytes (371 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 371 Kb | |
| * installing *source* package ‘R.oo’ ... | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Warning: S3 methods ‘$.BasicObject’, ‘$<-.BasicObject’, ‘[[.BasicObject’, ‘[[<-.BasicObject’, ‘as.character.BasicObject’, ‘attach.BasicObject’, ‘detach.BasicObject’, ‘equals.BasicObject’, ‘extend.BasicObject’, ‘getFields.BasicObject’, ‘getInstantiationTime.BasicObject’, ‘hasField.BasicObject’, ‘hashCode.BasicObject’, ‘isReferable.BasicObject’, ‘newInstance.BasicObject’, ‘objectSize.BasicObject’, ‘print.BasicObject’, ‘uses.character’, ‘$.Class’, ‘$<-.Class’, ‘[[.Class’, ‘[[<-.Class’, ‘argsToString.Class’, ‘as.character.Class’, ‘forName.Class’, ‘getDetails.Class’, ‘getFields.Class’, ‘getKnownSubclasses.Class’, ‘getMethods.Class’, ‘getName.Class’, ‘getPackage.Class’, ‘getRdDeclaration.Class’, ‘getRdHierarchy.Class’, ‘getRdMethods.Class’, ‘getStaticInstance.Class’, ‘getSuperclasses.Class’, ‘isAbstract.Class’, ‘isBeingCreated.Class’, ‘isDeprecated. [... truncated] | |
| * DONE (R.oo) | |
| ------------------------------------------------- R.oo ASCII | |
| > install.packages("http://braju.com/R/xfer/20141210/R.oo/CRLF-onlyASCII/R.oo_1.18.0.tar.gz") | |
| Installing package into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| trying URL 'http://braju.com/R/xfer/20141210/R.oo/CRLF-onlyASCII/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 381561 bytes (372 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 372 Kb | |
| * installing *source* package ‘R.oo’ ... | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.oo) | |
| ------------------------------------------------------ manual install of R.oo | |
| R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" | |
| Copyright (C) 2014 The R Foundation for Statistical Computing | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| R is free software and comes with ABSOLUTELY NO WARRANTY. | |
| You are welcome to redistribute it under certain conditions. | |
| Type 'license()' or 'licence()' for distribution details. | |
| R is a collaborative project with many contributors. | |
| Type 'contributors()' for more information and | |
| 'citation()' on how to cite R or R packages in publications. | |
| Type 'demo()' for some demos, 'help()' for on-line help, or | |
| 'help.start()' for an HTML browser interface to help. | |
| Type 'q()' to quit R. | |
| > url <- 'http://cran.rstudio.com/src/contrib/R.oo_1.18.0.tar.gz' | |
| > file <- basename(url) | |
| > download.file(url, basename(url), mode='wb') | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 394545 bytes (385 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 385 Kb | |
| > file.info(file)$size | |
| [1] 394545 | |
| > tools::md5sum(file) | |
| R.oo_1.18.0.tar.gz | |
| "1d1020ebb3962242b4fc713dbb4f9252" | |
| > install.packages(file) | |
| Installing package into '/usr/local/lib/R/site-library' | |
| (as 'lib' is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| ERROR: dependency 'R.methodsS3' is not available for package 'R.oo' | |
| * removing '/usr/local/lib/R/site-library/R.oo' | |
| Warning message: | |
| In install.packages(file) : | |
| installation of package 'R.oo_1.18.0.tar.gz' had non-zero exit status | |
| > install.packages('R.methodsS3') | |
| Installing package into '/usr/local/lib/R/site-library' | |
| (as 'lib' is unspecified) | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.methodsS3_1.6.1.tar.gz' | |
| Content type 'application/x-gzip' length 23156 bytes (22 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 22 Kb | |
| * installing *source* package 'R.methodsS3' ... | |
| ** package 'R.methodsS3' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.methodsS3) | |
| The downloaded source packages are in | |
| '/tmp/RtmpkASdAQ/downloaded_packages' | |
| > install.packages(file) | |
| Installing package into '/usr/local/lib/R/site-library' | |
| (as 'lib' is unspecified) | |
| inferring 'repos = NULL' from 'pkgs' | |
| * installing *source* package 'R.oo' ... | |
| ** package 'R.oo' successfully unpacked and MD5 sums checked | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Warning: S3 methods '$.BasicObject', '$<-.BasicObject', '[[.BasicObject', '[[<-.BasicObject', 'as.character.BasicObject', 'attach.BasicObject', 'detach.BasicObject', 'equals.BasicObject', 'extend.BasicObject', 'getFields.BasicObject', 'getInstantiationTime.BasicObject', 'hasField.BasicObject', 'hashCode.BasicObject', 'isReferable.BasicObject', 'newInstance.BasicObject', 'objectSize.BasicObject', 'print.BasicObject', 'uses.character', '$.Class', '$<-.Class', '[[.Class', '[[<-.Class', 'argsToString.Class', 'as.character.Class', 'forName.Class', 'getDetails.Class', 'getFields.Class', 'getKnownSubclasses.Class', 'getMethods.Class', 'getName.Class', 'getPackage.Class', 'getRdDeclaration.Class', 'getRdHierarchy.Class', 'getRdMethods.Class', 'getStaticInstance.Class', 'getSuperclasses.Class', 'isAbstract.Class', 'isBeingCreated.Class', 'isDeprecated.Class', 'isPrivate.Class', 'isProtected.Class', 'isPublic.Class', 'isStatic.Class', 'newInstance.Class', 'print.Class', 'getKnownSubclasses.classRepresent [... truncated] | |
| * DONE (R.oo) | |
| ------------------------------------------- FIRST LOG : R.oo only | |
| R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" | |
| Copyright (C) 2014 The R Foundation for Statistical Computing | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| R is free software and comes with ABSOLUTELY NO WARRANTY. | |
| You are welcome to redistribute it under certain conditions. | |
| Type 'license()' or 'licence()' for distribution details. | |
| R is a collaborative project with many contributors. | |
| Type 'contributors()' for more information and | |
| 'citation()' on how to cite R or R packages in publications. | |
| Type 'demo()' for some demos, 'help()' for on-line help, or | |
| 'help.start()' for an HTML browser interface to help. | |
| Type 'q()' to quit R. | |
| > install.packages('R.oo') | |
| Installing package into '/usr/local/lib/R/site-library' | |
| (as 'lib' is unspecified) | |
| Warning in install.packages("R.oo") : | |
| 'lib = "/usr/local/lib/R/site-library"' is not writable | |
| Would you like to use a personal library instead? (y/n) y | |
| Would you like to create a personal library | |
| ~/R/x86_64-pc-linux-gnu-library/3.1 | |
| to install packages into? (y/n) y | |
| also installing the dependency 'R.methodsS3' | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.methodsS3_1.6.1.tar.gz' | |
| Content type 'application/x-gzip' length 23156 bytes (22 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 22 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 394545 bytes (385 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 385 Kb | |
| * installing *source* package 'R.methodsS3' ... | |
| ** package 'R.methodsS3' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.methodsS3) | |
| * installing *source* package 'R.oo' ... | |
| ** package 'R.oo' successfully unpacked and MD5 sums checked | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/home/rgrass/R/x86_64-pc-linux-gnu-library/3.1/R.oo/R/R.oo' | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : | |
| invalid input found on input connection '/home/rgrass/R/x86_64-pc-linux-gnu-library/3.1/R.oo/R/R.oo' | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Warning: S3 methods '$.BasicObject', '$<-.BasicObject', '[[.BasicObject', '[[<-.BasicObject', 'as.character.BasicObject', 'attach.BasicObject', 'detach.BasicObject', 'equals.BasicObject', 'extend.BasicObject', 'getFields.BasicObject', 'getInstantiationTime.BasicObject', 'hasField.BasicObject', 'hashCode.BasicObject', 'isReferable.BasicObject', 'newInstance.BasicObject', 'objectSize.BasicObject', 'print.BasicObject', 'uses.character', '$.Class', '$<-.Class', '[[.Class', '[[<-.Class', 'argsToString.Class', 'as.character.Class', 'forName.Class', 'getDetails.Class', 'getFields.Class', 'getKnownSubclasses.Class', 'getMethods.Class', 'getName.Class', 'getPackage.Class', 'getRdDeclaration.Class', 'getRdHierarchy.Class', 'getRdMethods.Class', 'getStaticInstance.Class', 'getSuperclasses.Class', 'isAbstract.Class', 'isBeingCreated.Class', 'isDeprecated.Class', 'isPrivate.Class', 'isProtected.Class', 'isPublic.Class', 'isStatic.Class', 'newInstance.Class', 'print.Class', 'getKnownSubclasses.classRepresent [... truncated] | |
| * DONE (R.oo) | |
| The downloaded source packages are in | |
| '/tmp/RtmpDhnz5p/downloaded_packages' | |
| ------------------------------------------- FIRST LOG : r.utils complete | |
| R version 3.1.2 (2014-10-31) -- "Pumpkin Helmet" | |
| Copyright (C) 2014 The R Foundation for Statistical Computing | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| R is free software and comes with ABSOLUTELY NO WARRANTY. | |
| You are welcome to redistribute it under certain conditions. | |
| Type 'license()' or 'licence()' for distribution details. | |
| R is a collaborative project with many contributors. | |
| Type 'contributors()' for more information and | |
| 'citation()' on how to cite R or R packages in publications. | |
| Type 'demo()' for some demos, 'help()' for on-line help, or | |
| 'help.start()' for an HTML browser interface to help. | |
| Type 'q()' to quit R. | |
| > install.packages('R.utils') | |
| Installing package into '/usr/local/lib/R/site-library' | |
| (as 'lib' is unspecified) | |
| also installing the dependencies 'R.oo', 'R.methodsS3' | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.oo_1.18.0.tar.gz' | |
| Content type 'application/x-gzip' length 394545 bytes (385 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 385 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.methodsS3_1.6.1.tar.gz' | |
| Content type 'application/x-gzip' length 23156 bytes (22 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 22 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/R.utils_1.34.0.tar.gz' | |
| Content type 'application/x-gzip' length 354260 bytes (345 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 345 Kb | |
| * installing *source* package 'R.methodsS3' ... | |
| ** package 'R.methodsS3' successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (R.methodsS3) | |
| * installing *source* package 'R.oo' ... | |
| ** package 'R.oo' successfully unpacked and MD5 sums checked | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** inst | |
| ** preparing package for lazy loading | |
| Warning in parse(n = -1, file = file, srcfile = NULL, keep.source = FALSE) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.oo/R/R.oo' | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Warning: S3 methods '$.BasicObject', '$<-.BasicObject', '[[.BasicObject', '[[<-.BasicObject', 'as.character.BasicObject', 'attach.BasicObject', 'detach.BasicObject', 'equals.BasicObject', 'extend.BasicObject', 'getFields.BasicObject', 'getInstantiationTime.BasicObject', 'hasField.BasicObject', 'hashCode.BasicObject', 'isReferable.BasicObject', 'newInstance.BasicObject', 'objectSize.BasicObject', 'print.BasicObject', 'uses.character', '$.Class', '$<-.Class', '[[.Class', '[[<-.Class', 'argsToString.Class', 'as.character.Class', 'forName.Class', 'getDetails.Class', 'getFields.Class', 'getKnownSubclasses.Class', 'getMethods.Class', 'getName.Class', 'getPackage.Class', 'getRdDeclaration.Class', 'getRdHierarchy.Class', 'getRdMethods.Class', 'getStaticInstance.Class', 'getSuperclasses.Class', 'isAbstract.Class', 'isBeingCreated.Class', 'isDeprecated.Class', 'isPrivate.Class', 'isProtected.Class', 'isPublic.Class', 'isStatic.Class', 'newInstance.Class', 'print.Class', 'getKnownSubclasses.classRepresent [... truncated] | |
| * DONE (R.oo) | |
| * installing *source* package 'R.utils' ... | |
| ** package 'R.utils' successfully unpacked and MD5 sums checked | |
| ** R | |
| Warning in parse(outFile) : | |
| invalid input found on input connection '/usr/local/lib/R/site-library/R.utils/R/R.utils' | |
| Error in parse(outFile) : | |
| /tmp/RtmpoDt0SO/R.INSTALL5248cb4168/R.utils/R/readWindowsShortcut.R:156:0: unexpected end of input | |
| 154: # ------------------------- | |
| 155: # 0h 1 dword Always 0000004Ch | |
| ^ | |
| ERROR: unable to collate and parse R files for package 'R.utils' | |
| * removing '/usr/local/lib/R/site-library/R.utils' | |
| The downloaded source packages are in | |
| '/tmp/RtmpSJw25O/downloaded_packages' | |
| Warning message: | |
| In install.packages("R.utils") : | |
| installation of package 'R.utils' had non-zero exit status | |
| > sessionInfo() | |
| R version 3.1.2 (2014-10-31) | |
| Platform: x86_64-pc-linux-gnu (64-bit) | |
| locale: | |
| [1] C | |
| attached base packages: | |
| [1] stats graphics grDevices utils datasets methods base | |
| loaded via a namespace (and not attached): | |
| [1] tools_3.1.2 |
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