download all omim with curl

download_all_omim.sh

if [ ! -d docs ]; then
        mkdir docs
fi
KEY="YOUR-KEY"
function download_omim {
        echo "download $1";
	curl -s --fail "http://api.omim.org/api/entry?mimNumber=$1&apiKey=$KEY&format=json&include=all" | jq '.omim.entryList[0].entry' > docs/$1
}

# curl https://omim.org/static/omim/data/mim2gene.txt | grep -oh '^[0-9]\+' | sort | uniq | \
if ! hash jq 2>/dev/null; then
	sudo apt-get install jq
fi
curl "https://omim.org/static/omim/data/mim2gene.txt" | awk 'NR>5 {print $1}' | sort | uniq | \
while read line; do
        echo $line
        cat docs/$line | jq '.' > /dev/null
        if [ $? -ne 0 ] || [ ! -f docs/$line ]; then
                download_omim $line
        fi
done