Created
November 17, 2017 14:17
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KNIP - ILastik error
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| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService cut: write error: Broken pipe | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService ImportError: No module named site | |
| ERROR Thread-16 KNIPLogService cut: write error: Broken pipe | |
| ERROR Thread-16 KNIPLogService WARNING cross_validation.py(44): DeprecationWarning: This module was deprecated in version 0.18 in favor of the model_selection module into which all the refactored classes and functions are moved. Also note that the interface of the new CV iterators are different from that of this module. This module will be removed in 0.20. | |
| ERROR Thread-16 KNIPLogService WARNING 2017-11-17 15:16:21,038 opConservationTracking 13831 139853621974848 Could not find any ILP solver | |
| ERROR Thread-16 KNIPLogService WARNING 2017-11-17 15:16:21,128 opStructuredTracking 13831 139853621974848 Could not find any ILP solver | |
| ERROR Thread-16 KNIPLogService WARNING 2017-11-17 15:16:21,135 structuredTrackingWorkflow 13831 139853621974848 Could not find any learning solver (HYTRA, PGMLINK). Tracking will use flow-based solver (DPCT). Learning for tracking will be disabled! | |
| ERROR Thread-16 KNIPLogService WARNING pkgutil.py(186): ImportWarning: Not importing directory '/home/gabriel/bin/ilastik-1.2.2/lib/python2.7/site-packages/mpl_toolkits': missing __init__.py | |
| ERROR Thread-16 KNIPLogService WARNING appletSerializer.py(792): UserWarning: This project file uses an old or unsupported classifier storage format. The classifier will be stored in the new format when you save your project. | |
| ERROR Thread-16 KNIPLogService ERROR 2017-11-17 15:16:23,071 log_exception 13831 139853621974848 Traceback (most recent call last): | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/shell/projectManager.py", line 443, in _loadProject | |
| ERROR Thread-16 KNIPLogService self.workflow.onProjectLoaded( self ) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/workflows/pixelClassification/pixelClassificationWorkflow.py", line 334, in onProjectLoaded | |
| ERROR Thread-16 KNIPLogService self.batchProcessingApplet.run_export_from_parsed_args(self._batch_input_args) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 60, in run_export_from_parsed_args | |
| ERROR Thread-16 KNIPLogService return self.run_export(role_path_dict, parsed_args.input_axes) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 123, in run_export | |
| ERROR Thread-16 KNIPLogService export_to_array=export_to_array ) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 213, in _run_export_with_empty_batch_lane | |
| ERROR Thread-16 KNIPLogService opDataSelectionBatchLaneView.DatasetGroup[role_index].setValue(info) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 110, in call_in_setup_context | |
| ERROR Thread-16 KNIPLogService return func(self, *args, **kwargs) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1221, in setValue | |
| ERROR Thread-16 KNIPLogService self._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1427, in _changed | |
| ERROR Thread-16 KNIPLogService self._configureOperator(self) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1441, in _configureOperator | |
| ERROR Thread-16 KNIPLogService self.operator._setupOutputs() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/operator.py", line 450, in _setupOutputs | |
| ERROR Thread-16 KNIPLogService self.setupOutputs() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/dataSelection/opDataSelection.py", line 381, in setupOutputs | |
| ERROR Thread-16 KNIPLogService .format( "".join(tag.key for tag in datasetInfo.axistags), len(providerSlot.meta.shape) ) ) | |
| ERROR Thread-16 KNIPLogService Exception: Your dataset's provided axistags (yx) do not have the correct dimensionality for your dataset, which has 5 dimensions. | |
| ERROR Thread-16 KNIPLogService | |
| ERROR Thread-16 KNIPLogService ERROR 2017-11-17 15:16:23,071 log_exception 13831 139853621974848 Project could not be loaded due to the exception shown above. | |
| ERROR Thread-16 KNIPLogService Aborting Project Open Action | |
| ERROR Thread-16 KNIPLogService ERROR 2017-11-17 15:16:23,313 excepthooks 13831 139853621974848 Unhandled exception in thread: 'MainThread' | |
| ERROR Thread-16 KNIPLogService ERROR 2017-11-17 15:16:23,318 excepthooks 13831 139853621974848 Traceback (most recent call last): | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik.py", line 122, in <module> | |
| ERROR Thread-16 KNIPLogService main() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik.py", line 108, in main | |
| ERROR Thread-16 KNIPLogService ilastik_main.main(parsed_args, workflow_cmdline_args) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik_main.py", line 107, in main | |
| ERROR Thread-16 KNIPLogService f(shell) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik_main.py", line 270, in loadProject | |
| ERROR Thread-16 KNIPLogService shell.openProjectFile(path, parsed_args.readonly) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/shell/headless/headlessShell.py", line 116, in openProjectFile | |
| ERROR Thread-16 KNIPLogService self.projectManager._loadProject(hdf5File, projectFilePath, readOnly) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/utility/timer.py", line 142, in wrapper | |
| ERROR Thread-16 KNIPLogService return func(*args, **kwargs) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/shell/projectManager.py", line 443, in _loadProject | |
| ERROR Thread-16 KNIPLogService self.workflow.onProjectLoaded( self ) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/workflows/pixelClassification/pixelClassificationWorkflow.py", line 334, in onProjectLoaded | |
| ERROR Thread-16 KNIPLogService self.batchProcessingApplet.run_export_from_parsed_args(self._batch_input_args) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 60, in run_export_from_parsed_args | |
| ERROR Thread-16 KNIPLogService return self.run_export(role_path_dict, parsed_args.input_axes) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 123, in run_export | |
| ERROR Thread-16 KNIPLogService export_to_array=export_to_array ) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/batchProcessing/batchProcessingApplet.py", line 213, in _run_export_with_empty_batch_lane | |
| ERROR Thread-16 KNIPLogService opDataSelectionBatchLaneView.DatasetGroup[role_index].setValue(info) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 110, in call_in_setup_context | |
| ERROR Thread-16 KNIPLogService return func(self, *args, **kwargs) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1221, in setValue | |
| ERROR Thread-16 KNIPLogService self._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1421, in _changed | |
| ERROR Thread-16 KNIPLogService c._changed() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1427, in _changed | |
| ERROR Thread-16 KNIPLogService self._configureOperator(self) | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/slot.py", line 1441, in _configureOperator | |
| ERROR Thread-16 KNIPLogService self.operator._setupOutputs() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/lazyflow/lazyflow/operator.py", line 450, in _setupOutputs | |
| ERROR Thread-16 KNIPLogService self.setupOutputs() | |
| ERROR Thread-16 KNIPLogService File "/home/gabriel/bin/ilastik-1.2.2/ilastik-meta/ilastik/ilastik/applets/dataSelection/opDataSelection.py", line 381, in setupOutputs | |
| ERROR Thread-16 KNIPLogService .format( "".join(tag.key for tag in datasetInfo.axistags), len(providerSlot.meta.shape) ) ) | |
| ERROR Thread-16 KNIPLogService Exception: Your dataset's provided axistags (yx) do not have the correct dimensionality for your dataset, which has 5 dimensions. | |
| ERROR Thread-16 KNIPLogService |
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