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May 22, 2019 20:02
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augustus on macOS 10.14.4 - Homebrew build logs
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| Homebrew build logs for augustus on macOS 10.14.4 | |
| Build date: 2019-05-22 15:40:41 |
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| HOMEBREW_VERSION: 2.1.3-13-g2d445ae | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 2d445aed5f901cd33724e74ffe4d997df7356d4d | |
| Last commit: 13 hours ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: e35102e3e381c1ceffd49002d545fdcbf70289cc | |
| Core tap last commit: 3 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_BINTRAY_KEY: set | |
| HOMEBREW_BINTRAY_USER: gaberoo | |
| HOMEBREW_DEV_CMD_RUN: 1 | |
| HOMEBREW_GITHUB_API_TOKEN: set | |
| HOMEBREW_VISUAL: vim | |
| CPU: 24-core 64-bit arrandale | |
| Homebrew Ruby: 2.3.7 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby | |
| Clang: 10.0 build 1001 | |
| Git: 2.21.0 => /usr/local/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Java: 12.0.1 | |
| macOS: 10.14.4-x86_64 | |
| CLT: 10.2.1.0.1.1554506761 | |
| Xcode: 10.2.1 | |
| CLT headers: 10.2.1.0.1.1554506761 | |
| XQuartz: 2.7.11 => /opt/X11 |
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| Please note that these warnings are just used to help the Homebrew maintainers | |
| with debugging if you file an issue. If everything you use Homebrew for is | |
| working fine: please don't worry or file an issue; just ignore this. Thanks! | |
| Warning: You have unlinked kegs in your Cellar. | |
| Leaving kegs unlinked can lead to build-trouble and cause brews that depend on | |
| those kegs to fail to run properly once built. Run `brew link` on these: | |
| numpy | |
| Warning: Some installed formulae are missing dependencies. | |
| You should `brew install` the missing dependencies: | |
| brew install augustus | |
| Run `brew missing` for more details. |
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| augustus |
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| 2019-05-22 15:40:41 -0400 | |
| make | |
| clean | |
| cd src && /Library/Developer/CommandLineTools/usr/bin/make clean | |
| rm -f ../bin/* augustus etraining prepareAlign fastBlockSearch genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o consensus.o exon_seg.o pp_fastBlockSearcher.o cxxflags | |
| cd auxprogs && /Library/Developer/CommandLineTools/usr/bin/make clean | |
| cd bam2hints; make clean; | |
| rm -f bam2hints.o bam2hints ../../bin/bam2hints | |
| cd compileSpliceCands; make clean; | |
| rm -f compileSpliceCands compileSpliceCands.o ../../bin/compileSpliceCands list.o | |
| cd filterBam; make clean; | |
| (cd src; make clean;) | |
| rm -f *~ filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o | |
| rm -f ../../../bin/filterBam | |
| cd homGeneMapping; make clean; | |
| (cd src; make clean; cd ../bin; rm -f homGeneMapping; cd ../../../bin; rm -f homGeneMapping) | |
| rm -f homGeneMapping gene.o genome.o | |
| /bin/sh: line 0: cd: ../bin: No such file or directory | |
| cd joingenes; make clean; | |
| rm -rf *o joingenes; rm -rf ../../bin/joingenes | |
| cd bam2wig; make clean; | |
| rm -f bam2wig bam2wig.o | |
| rm -f ../../bin/bam2wig | |
| cd utrrnaseq/Debug; make clean; | |
| rm -rf ./src/Compute_UTRs.o ./src/Coord_Transform.o ./src/Genomic_Data.o ./src/Splice_Sites.o ./src/Supporting_Methods.o ./src/Test.o ./src/UTRs.o ./src/main.o ./src/Compute_UTRs.d ./src/Coord_Transform.d ./src/Genomic_Data.d ./src/Splice_Sites.d ./src/Supporting_Methods.d ./src/Test.d ./src/UTRs.d ./src/main.d utrrnaseq | |
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| 2019-05-22 15:40:41 -0400 | |
| make | |
| mkdir -p bin | |
| cd src && /Library/Developer/CommandLineTools/usr/bin/make | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o genbank.o genbank.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o properties.o properties.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_profile.o pp_profile.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_hitseq.o pp_hitseq.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_scoring.o pp_scoring.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o statemodel.o statemodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o namgene.o namgene.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o types.o types.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o gene.o gene.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o evaluation.o evaluation.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o motif.o motif.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o geneticcode.o geneticcode.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o hints.o hints.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o extrinsicinfo.o extrinsicinfo.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o projectio.o projectio.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o intronmodel.o intronmodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exonmodel.o exonmodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o igenicmodel.o igenicmodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o utrmodel.o utrmodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o merkmal.o merkmal.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o vitmatrix.o vitmatrix.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o lldouble.o lldouble.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o mea.o mea.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o graph.o graph.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o meaPath.o meaPath.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exoncand.o exoncand.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o randseqaccess.o randseqaccess.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o fasta.o fasta.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o ncmodel.o ncmodel.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o commontrain.o commontrain.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o igenictrain.o igenictrain.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o introntrain.o introntrain.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exontrain.o exontrain.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o utrtrain.o utrtrain.cc -I../include | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o dummy.o dummy.cc -I../include | |
| g++ -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o prepareAlign pp_prepare_align.cc | |
| g++ -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include | |
| echo "-Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 " > cxxflags | |
| g++ -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include | |
| cp prepareAlign ../bin/ | |
| g++ -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include | |
| g++ -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include | |
| cp fastBlockSearch ../bin/ | |
| cp etraining ../bin/ | |
| cp augustus ../bin/ | |
| cd auxprogs && /Library/Developer/CommandLineTools/usr/bin/make | |
| cd bam2hints; make; | |
| g++ -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/local/opt/bamtools/include/bamtools | |
| g++ -Wall -O2 -o bam2hints bam2hints.o -lbamtools -lz | |
| Undefined symbols for architecture x86_64: | |
| "BamTools::BamReader::Open(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)", referenced from: | |
| _main in bam2hints.o | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::at(unsigned long) const", referenced from: | |
| BamTools::Internal::SamHeaderValidator::CheckNameFormat(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| caseInsensitiveCompare(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::HttpRequestHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::find(char, unsigned long) const", referenced from: | |
| BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::BamFtp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamFtp_p.cpp.o) | |
| BamTools::Internal::BamFtp::ParsePassiveResponse() in libbamtools.a(BamFtp_p.cpp.o) | |
| BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamHttp_p.cpp.o) | |
| BamTools::Internal::HttpHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o) | |
| BamTools::Internal::HttpRequestHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o) | |
| BamTools::Internal::HttpResponseHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::rfind(char, unsigned long) const", referenced from: | |
| BamTools::Internal::BamIndexFactory::FileExtension(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamIndexFactory_p.cpp.o) | |
| BamTools::Internal::HostAddress::ParseAddress() in libbamtools.a(HostAddress_p.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::compare(unsigned long, unsigned long, char const*, unsigned long) const", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::Internal::BamDeviceFactory::CreateDevice(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamDeviceFactory_p.cpp.o) | |
| "std::__1::__vector_base_common<true>::__throw_length_error() const", referenced from: | |
| std::__1::vector<BamTools::CigarOp, std::__1::allocator<BamTools::CigarOp> >::allocate(unsigned long) in libbamtools.a(BamAlignment.cpp.o) | |
| void std::__1::vector<int, std::__1::allocator<int> >::__push_back_slow_path<int const>(int const&) in libbamtools.a(BamAlignment.cpp.o) | |
| void std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__push_back_slow_path<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::vector<BamTools::CustomHeaderTag, std::__1::allocator<BamTools::CustomHeaderTag> >::allocate(unsigned long) in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::allocate(unsigned long) in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::vector<BamTools::SamProgram, std::__1::allocator<BamTools::SamProgram> >::allocate(unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| void std::__1::vector<BamTools::SamProgram, std::__1::allocator<BamTools::SamProgram> >::__push_back_slow_path<BamTools::SamProgram const>(BamTools::SamProgram const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| ... | |
| "std::__1::__vector_base_common<true>::__throw_out_of_range() const", referenced from: | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamSequenceDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamSequenceDictionary.cpp.o) | |
| BamTools::SamSequenceDictionary::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamSequenceDictionary.cpp.o) | |
| BamTools::SamReadGroupDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o) | |
| BamTools::SamReadGroupDictionary::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamReadGroupDictionary.cpp.o) | |
| BamTools::Internal::BamToolsIndex::ReadReferenceEntry(BamTools::Internal::BtiReferenceEntry&) in libbamtools.a(BamToolsIndex_p.cpp.o) | |
| BamTools::Internal::BamToolsIndex::HasAlignments(int const&) const in libbamtools.a(BamToolsIndex_p.cpp.o) | |
| ... | |
| "std::__1::__basic_string_common<true>::__throw_length_error() const", referenced from: | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str() const in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::Close() in libbamtools.a(BamReader_p.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamReader_p.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::GetNextAlignmentCore(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o) | |
| ... | |
| "std::__1::locale::use_facet(std::__1::locale::id&) const", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| ... | |
| "std::__1::ios_base::getloc() const", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::at(unsigned long)", referenced from: | |
| BamTools::Internal::HttpResponseHeader::ParseLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int) in libbamtools.a(HttpHeader_p.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::append(char const*, unsigned long)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamReader_p.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char const*) in libbamtools.a(BamReader_p.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::append(unsigned long, char)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::assign(char const*)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::SamHeader::SetHeaderText(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::BamToolsIndex::Create() in libbamtools.a(BamToolsIndex_p.cpp.o) | |
| BamTools::Internal::BamToolsIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamToolsIndex_p.cpp.o) | |
| BamTools::Internal::BamToolsIndex::Load(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamToolsIndex_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::Jump(BamTools::BamRegion const&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::assign(char const*, unsigned long)", referenced from: | |
| BamTools::BamAlignment::RemoveTag(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::LoadNextAlignment(BamTools::BamAlignment&) in libbamtools.a(BamReader_p.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::resize(unsigned long, char)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::str(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::reserve(unsigned long)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::Tag2Cigar(BamTools::BamAlignment&, BamTools::RaiiBuffer&) in libbamtools.a(BamReader_p.cpp.o) | |
| BamTools::Internal::BamHttp::ParseUrl(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamHttp_p.cpp.o) | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::push_back(char)", referenced from: | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::overflow(int) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::basic_string(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from: | |
| BamTools::BamAlignment::BamAlignment(BamTools::BamAlignment const&) in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::BamAlignment::GetErrorString() const in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::BamAlignment::GetTagNames() const in libbamtools.a(BamAlignment.cpp.o) | |
| void std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__push_back_slow_path<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const>(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamAlignment.cpp.o) | |
| std::__1::vector<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > > >::__swap_out_circular_buffer(std::__1::__split_buffer<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >, std::__1::allocator<std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > >&>&) in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::SamHeader::SamHeader(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::SamHeader::SamHeader(BamTools::SamHeader const&) in libbamtools.a(SamHeader.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::basic_string(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned long, unsigned long, std::__1::allocator<char> const&)", referenced from: | |
| BamTools::BamAlignment::BuildCharData() in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::Internal::SamFormatParser::ParseSamLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::ParseHDLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::ParseSQLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::ParseRGLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::ParsePGLine(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_string()", referenced from: | |
| BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o) | |
| __GLOBAL__sub_I_SamHeader.cpp in libbamtools.a(SamHeader.cpp.o) | |
| __GLOBAL__sub_I_SamFormatParser_p.cpp in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::BamReaderPrivate::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(BamReader_p.cpp.o) | |
| __GLOBAL__sub_I_SamFormatPrinter_p.cpp in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| __GLOBAL__sub_I_SamHeaderValidator_p.cpp in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| __GLOBAL__sub_I_BamException_p.cpp in libbamtools.a(BamException_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >::operator=(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from: | |
| BamTools::BamAlignment::SetErrorString(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) const in libbamtools.a(BamAlignment.cpp.o) | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::SamProgramChain::Add(BamTools::SamProgram&) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamSequenceDictionary::Remove(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamSequenceDictionary.cpp.o) | |
| __ZNSt3__16vectorIN8BamTools15CustomHeaderTagENS_9allocatorIS2_EEE6assignIPS2_EENS_9enable_ifIXaasr21__is_forward_iteratorIT_EE5valuesr16is_constructibleIS2_NS_15iterator_traitsIS9_E9referenceEEE5valueEvE4typeES9_S9_ in libbamtools.a(SamSequenceDictionary.cpp.o) | |
| BamTools::SamReadGroup::operator=(BamTools::SamReadGroup const&) in libbamtools.a(SamReadGroupDictionary.cpp.o) | |
| __ZNSt3__16vectorIN8BamTools15CustomHeaderTagENS_9allocatorIS2_EEE6assignIPS2_EENS_9enable_ifIXaasr21__is_forward_iteratorIT_EE5valuesr16is_constructibleIS2_NS_15iterator_traitsIS9_E9referenceEEE5valueEvE4typeES9_S9_ in libbamtools.a(SamReadGroupDictionary.cpp.o) | |
| ... | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::sentry::sentry(std::__1::basic_istream<char, std::__1::char_traits<char> >&, bool)", referenced from: | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(BamFtp_p.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(HttpHeader_p.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(HostAddress_p.cpp.o) | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from: | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from: | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from: | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::operator>>(unsigned int&)", referenced from: | |
| BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| "std::__1::basic_istream<char, std::__1::char_traits<char> >::operator>>(unsigned short&)", referenced from: | |
| BamTools::Internal::TcpSocket::ConnectImpl(BamTools::Internal::HostInfo const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o) | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::put(char)", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::PrintHD(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::PrintSQ(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::flush()", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::PrintHD(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::PrintSQ(std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >&) const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::sentry::sentry(std::__1::basic_ostream<char, std::__1::char_traits<char> >&)", referenced from: | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::sentry::~sentry()", referenced from: | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamHttp_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from: | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from: | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(int)", referenced from: | |
| BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o) | |
| BamTools::Internal::BamRandomAccessController::CreateIndex(BamTools::Internal::BamReaderPrivate*, BamTools::BamIndex::IndexType const&) in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::Create() in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::HttpRequestHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o) | |
| BamTools::Internal::HttpResponseHeader::ToString() const in libbamtools.a(HttpHeader_p.cpp.o) | |
| BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o) | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned int)", referenced from: | |
| BamTools::Internal::BamStandardIndex::CheckBufferSize(char*&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::CheckBufferSize(unsigned char*&, unsigned int&, unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::HostAddress::GetIPString() const in libbamtools.a(HostAddress_p.cpp.o) | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned long)", referenced from: | |
| BamTools::Internal::SamHeaderValidator::PrintErrorMessages(std::__1::basic_ostream<char, std::__1::char_traits<char> >&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::PrintWarningMessages(std::__1::basic_ostream<char, std::__1::char_traits<char> >&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o) | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(unsigned short)", referenced from: | |
| BamTools::Internal::TcpSocket::ConnectToHost(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, unsigned short, BamTools::IBamIODevice::OpenMode) in libbamtools.a(TcpSocket_p.cpp.o) | |
| "std::__1::basic_ostream<char, std::__1::char_traits<char> >::operator<<(long long)", referenced from: | |
| BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o) | |
| BamTools::Internal::BgzfStream::Seek(long long const&) in libbamtools.a(BgzfStream_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::ReadIntoBuffer(unsigned int const&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::BamFtp::ConnectDataSocket() in libbamtools.a(BamFtp_p.cpp.o) | |
| BamTools::Internal::BamHttp::SendGetRequest(unsigned long) in libbamtools.a(BamHttp_p.cpp.o) | |
| "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::sync()", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::imbue(std::__1::locale const&)", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::uflow()", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::setbuf(char*, long)", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::xsgetn(char*, long)", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::xsputn(char const*, long)", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::showmanyc()", referenced from: | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| vtable for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::basic_streambuf()", referenced from: | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o) | |
| BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "std::__1::basic_streambuf<char, std::__1::char_traits<char> >::~basic_streambuf()", referenced from: | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringbuf() in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringbuf() in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| ... | |
| "std::__1::cerr", referenced from: | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| "std::__1::ctype<char>::id", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| ... | |
| "void std::__1::__sort<std::__1::__less<long long, long long>&, long long*>(long long*, long long*, std::__1::__less<long long, long long>&)", referenced from: | |
| BamTools::Internal::BamStandardIndex::GetOffset(BamTools::BamRegion const&, long long&, bool*) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| "void std::__1::__sort<std::__1::__less<unsigned long long, unsigned long long>&, unsigned long long*>(unsigned long long*, unsigned long long*, std::__1::__less<unsigned long long, unsigned long long>&)", referenced from: | |
| BamTools::Internal::BamStandardIndex::SortLinearOffsets(std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> >&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| BamTools::Internal::BamStandardIndex::WriteLinearOffsets(int const&, std::__1::vector<unsigned long long, std::__1::allocator<unsigned long long> >&) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| "std::__1::locale::~locale()", referenced from: | |
| BamTools::SamProgramChain::First() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::First() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::Last() const in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::SamProgramChain::operator[](std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| ... | |
| "std::__1::ios_base::__set_badbit_and_consider_rethrow()", referenced from: | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| ... | |
| "std::__1::ios_base::init(void*)", referenced from: | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::SamSequence::SamSequence(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, int const&) in libbamtools.a(SamSequence.cpp.o) | |
| BamTools::Internal::BgzfStream::FlushBlock() in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "std::__1::ios_base::clear(unsigned int)", referenced from: | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamProgramChain.cpp.o) | |
| std::__1::basic_istream<char, std::__1::char_traits<char> >& std::__1::getline<char, std::__1::char_traits<char>, std::__1::allocator<char> >(std::__1::basic_istream<char, std::__1::char_traits<char> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> >&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BgzfStream_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| std::__1::basic_ostream<char, std::__1::char_traits<char> >& std::__1::__put_character_sequence<char, std::__1::char_traits<char> >(std::__1::basic_ostream<char, std::__1::char_traits<char> >&, char const*, unsigned long) in libbamtools.a(BamStandardIndex_p.cpp.o) | |
| ... | |
| "std::__1::basic_ios<char, std::__1::char_traits<char> >::~basic_ios()", referenced from: | |
| BamTools::SamHeader::IsValid(bool) const in libbamtools.a(SamHeader.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamHeader.cpp.o) | |
| BamTools::Internal::SamFormatParser::Parse(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_istringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatParser::Split(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, char) in libbamtools.a(SamFormatParser_p.cpp.o) | |
| std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> >::~basic_stringstream() in libbamtools.a(SamFormatParser_p.cpp.o) | |
| BamTools::Internal::SamFormatPrinter::ToString() const in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| ... | |
| "std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > std::__1::operator+<char, std::__1::char_traits<char>, std::__1::allocator<char> >(char const*, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&)", referenced from: | |
| BamTools::Internal::SamHeaderValidator::ValidateVersion() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::ValidateSortOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::ValidateGroupOrder() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::ContainsUniqueSequenceNames() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::CheckNameFormat(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::CheckLengthInRange(std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&) in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| BamTools::Internal::SamHeaderValidator::ContainsUniqueIDsAndPlatformUnits() in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "typeinfo for std::__1::basic_istream<char, std::__1::char_traits<char> >", referenced from: | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| typeinfo for std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| ... | |
| "typeinfo for std::__1::basic_ostream<char, std::__1::char_traits<char> >", referenced from: | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "typeinfo for std::__1::basic_iostream<char, std::__1::char_traits<char> >", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| typeinfo for std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| ... | |
| "typeinfo for std::__1::basic_streambuf<char, std::__1::char_traits<char> >", referenced from: | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| typeinfo for std::__1::basic_stringbuf<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "non-virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "non-virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from: | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_istream<char, std::__1::char_traits<char> >::~basic_istream()", referenced from: | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_istringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_istream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from: | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_ostream<char, std::__1::char_traits<char> >::~basic_ostream()", referenced from: | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_ostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| "virtual thunk to std::__1::basic_iostream<char, std::__1::char_traits<char> >::~basic_iostream()", referenced from: | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeader.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatParser_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamFormatPrinter_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamHeaderValidator_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(SamSequence.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BgzfStream_p.cpp.o) | |
| construction vtable for std::__1::basic_iostream<char, std::__1::char_traits<char> >-in-std::__1::basic_stringstream<char, std::__1::char_traits<char>, std::__1::allocator<char> > in libbamtools.a(BamRandomAccessController_p.cpp.o) | |
| ... | |
| ld: symbol(s) not found for architecture x86_64 | |
| collect2: error: ld returned 1 exit status | |
| make[2]: *** [bam2hints] Error 1 | |
| make[1]: *** [all] Error 2 | |
| make: *** [all] Error 2 | |
| HOMEBREW_VERSION: 2.1.3-13-g2d445ae | |
| ORIGIN: https://github.com/Homebrew/brew | |
| HEAD: 2d445aed5f901cd33724e74ffe4d997df7356d4d | |
| Last commit: 12 hours ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: e35102e3e381c1ceffd49002d545fdcbf70289cc | |
| Core tap last commit: 3 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CACHE: /Users/gaberoo/Library/Caches/Homebrew | |
| HOMEBREW_LOGS: /Users/gaberoo/Library/Logs/Homebrew | |
| CPU: 24-core 64-bit arrandale | |
| Homebrew Ruby: 2.3.7 => /System/Library/Frameworks/Ruby.framework/Versions/2.3/usr/bin/ruby | |
| Clang: 10.0 build 1001 | |
| Git: 2.21.0 => /usr/local/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Java: 12.0.1 | |
| macOS: 10.14.4-x86_64 | |
| CLT: 10.2.1.0.1.1554506761 | |
| Xcode: 10.2.1 | |
| CLT headers: 10.2.1.0.1.1554506761 | |
| XQuartz: 2.7.11 => /opt/X11 | |
| HOMEBREW_CC: gcc-9 | |
| HOMEBREW_CXX: g++-9 | |
| MAKEFLAGS: -j24 | |
| CMAKE_PREFIX_PATH: /usr/local/opt/icu4c:/usr/local | |
| CMAKE_INCLUDE_PATH: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2:/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| PKG_CONFIG_PATH: /usr/local/opt/bamtools/lib/pkgconfig:/usr/local/opt/icu4c/lib/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.14 | |
| HOMEBREW_GIT: git | |
| HOMEBREW_SDKROOT: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/mac/super:/usr/local/opt/bamtools/bin:/usr/local/opt/icu4c/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/opt/gcc/bin |
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| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o properties.o properties.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o properties.o properties.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o genbank.o genbank.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o genbank.o genbank.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_hitseq.o pp_hitseq.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o pp_hitseq.o pp_hitseq.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_profile.o pp_profile.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o pp_profile.o pp_profile.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_scoring.o pp_scoring.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o pp_scoring.o pp_scoring.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o namgene.o namgene.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o namgene.o namgene.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o statemodel.o statemodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o statemodel.o statemodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o gene.o gene.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o gene.o gene.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o types.o types.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o types.o types.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o motif.o motif.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o motif.o motif.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o evaluation.o evaluation.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o evaluation.o evaluation.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o geneticcode.o geneticcode.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o geneticcode.o geneticcode.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o hints.o hints.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o hints.o hints.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o extrinsicinfo.o extrinsicinfo.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o extrinsicinfo.o extrinsicinfo.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o intronmodel.o intronmodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o intronmodel.o intronmodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exonmodel.o exonmodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o exonmodel.o exonmodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o projectio.o projectio.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o projectio.o projectio.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o utrmodel.o utrmodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o utrmodel.o utrmodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o merkmal.o merkmal.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o merkmal.o merkmal.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o mea.o mea.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o mea.o mea.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o graph.o graph.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o graph.o graph.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o igenicmodel.o igenicmodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o igenicmodel.o igenicmodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o lldouble.o lldouble.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o lldouble.o lldouble.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o vitmatrix.o vitmatrix.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o vitmatrix.o vitmatrix.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o meaPath.o meaPath.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o meaPath.o meaPath.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exoncand.o exoncand.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o exoncand.o exoncand.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o randseqaccess.o randseqaccess.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o randseqaccess.o randseqaccess.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o fasta.o fasta.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o fasta.o fasta.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o ncmodel.o ncmodel.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o ncmodel.o ncmodel.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o commontrain.o commontrain.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o commontrain.o commontrain.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o igenictrain.o igenictrain.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o igenictrain.o igenictrain.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o introntrain.o introntrain.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o introntrain.o introntrain.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o exontrain.o exontrain.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o exontrain.o exontrain.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o utrtrain.o utrtrain.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o utrtrain.o utrtrain.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o dummy.o dummy.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o dummy.o dummy.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o prepareAlign pp_prepare_align.cc | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -Wno-sign-compare -Wno-strict-overflow -o prepareAlign pp_prepare_align.cc -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| g++ called with: -c -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c -Wno-sign-compare -Wno-strict-overflow -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -Wno-sign-compare -Wno-strict-overflow -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| ld called with: -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o prepareAlign -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/cc7CSXcK.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem | |
| superenv executed: ld -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -headerpad_max_install_names -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o prepareAlign -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/cc7CSXcK.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| g++ called with: -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -Wno-sign-compare -Wno-strict-overflow -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| g++ called with: -Wall -Wno-sign-compare -Wno-strict-overflow -pedantic -g -ggdb -O3 -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include | |
| superenv removed: -Wall -pedantic -g -ggdb -O3 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -Wno-sign-compare -Wno-strict-overflow -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| ld called with: -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o fastBlockSearch -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccb4ZT2e.o pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem | |
| superenv executed: ld -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -headerpad_max_install_names -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o fastBlockSearch -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccb4ZT2e.o pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| ld called with: -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o etraining -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccnvgTku.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem | |
| superenv executed: ld -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -headerpad_max_install_names -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o etraining -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccnvgTku.o commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| ld called with: -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o augustus -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccwESAtY.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem | |
| superenv executed: ld -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -headerpad_max_install_names -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o augustus -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. /private/tmp/ccwESAtY.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
| g++ called with: -Wall -O2 -c bam2hints.cc -o bam2hints.o -I/usr/local/opt/bamtools/include/bamtools | |
| superenv removed: -Wall -O2 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -c bam2hints.cc -o bam2hints.o -I/usr/local/opt/bamtools/include/bamtools -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include | |
| g++ called with: -Wall -O2 -o bam2hints bam2hints.o -lbamtools -lz | |
| superenv removed: -Wall -O2 | |
| superenv added: -pipe -w -Os -march=nehalem -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| superenv executed: g++-9 -pipe -w -Os -march=nehalem -o bam2hints bam2hints.o -lbamtools -lz -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk --sysroot=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -isystem/usr/local/include -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/usr/include/libxml2 -isystem/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -I/usr/local/opt/icu4c/include -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names | |
| ld called with: -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o bam2hints -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. bam2hints.o -lbamtools -lz -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem | |
| superenv executed: ld -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -headerpad_max_install_names -dynamic -arch x86_64 -macosx_version_min 10.14.0 -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk -weak_reference_mismatches non-weak -w -o bam2hints -L/usr/local/opt/icu4c/lib -L/usr/local/lib -L/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0 -L/usr/local/Cellar/gcc/9.1.0/lib/gcc/9/gcc/x86_64-apple-darwin18/9.1.0/../../.. bam2hints.o -lbamtools -lz -headerpad_max_install_names -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -syslibroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.14.sdk | |
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