Skip to content

Instantly share code, notes, and snippets.

View gabrielbenavidez's full-sized avatar

Gabriel Benavidez gabrielbenavidez

  • Washington, DC
View GitHub Profile
@gabrielbenavidez
gabrielbenavidez / docker-compose.yml
Created February 17, 2022 23:05
epadlite docker-compose file
version: "3"
services:
myepadjs:
build: ./epadjs
container_name: epad_js
expose:
- "80"
ports:
- "80:80"
volumes:
@gabrielbenavidez
gabrielbenavidez / dataSourceWrapper.xml
Created January 15, 2020 21:36
<tool name="genetegra_query" id="genetegra_query" tool_type="data_source" >
<command>
<![CDATA[ ~/galaxy/tools/data_source/data_source.py $output $__app__.config.output_size_limit]]>
</command>
<inputs action="http://10.0.1.7:4200" check_values="false" method="post" />
<param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
<param name="tool_id" type="hidden" value="genetegra_query" />
<param name="sendToGalaxy" type="hidden" value="1" />
<request_param_translation>
@gabrielbenavidez
gabrielbenavidez / testWebpage.html
Created January 15, 2020 21:31
<!DOCTYPE html>
<html>
<form action="http://10.0.1.7:8080/tool_runner" method="POST">
<input type="HIDDEN" name="tool_id" value="genetegra_query">
<input type="HIDDEN" name="URL" value="http://10.0.1.7:4200">
<input type="HIDDEN" name="data_type" value="tabular">
<input type="submit" name="sendToGalaxy" id="sendToGalaxy" value="Send query to Galaxy">
</form>
</html>
@gabrielbenavidez
gabrielbenavidez / qiime_demux_summarize.xml
Created January 15, 2020 17:18
<?xml version="1.0" ?>
<tool id="qiime_demux_summarize" name="qiime demux summarize">
<description> - Summarize counts per sample.</description>
<requirements>
<container type="docker">qiime2/core</container>
</requirements>
<command ><![CDATA[
qiime demux summarize --i-data=$idata
#if str($pn):
--p-n=$pn