Gauden Galea gauden

## turbo_colormap.py
# Copyright 2019 Google LLC.
# SPDX-License-Identifier: Apache-2.0

# Author: Anton Mikhailov

turbo_colormap_data = [[0.18995,0.07176,0.23217],[0.19483,0.08339,0.26149],[0.19956,0.09498,0.29024],[0.20415,0.10652,0.31844],[0.20860,0.11802,0.34607],[0.21291,0.12947,0.37314],[0.21708,0.14087,0.39964],[0.22111,0.15223,0.42558],[0.22500,0.16354,0.45096],[0.22875,0.17481,0.47578],[0.23236,0.18603,0.50004],[0.23582,0.19720,0.52373],[0.23915,0.20833,0.54686],[0.24234,0.21941,0.56942],[0.24539,0.23044,0.59142],[0.24830,0.24143,0.61286],[0.25107,0.25237,0.63374],[0.25369,0.26327,0.65406],[0.25618,0.27412,0.67381],[0.25853,0.28492,0.69300],[0.26074,0.29568,0.71162],[0.26280,0.30639,0.72968],[0.26473,0.31706,0.74718],[0.26652,0.32768,0.76412],[0.26816,0.33825,0.78050],[0.26967,0.34878,0.79631],[0.27103,0.35926,0.81156],[0.27226,0.36970,0.82624],[0.27334,0.38008,0.84037],[0.27429,0.39043,0.85393],[0.27509,0.40072,0.86692],[0.27576,0.41097,0.87936],[0.27628,0.42118,0.89123],[0.27667,0.43134,0.90254],[0.27691,0.44145,0.913

## pub_med.py
#!/usr/bin/env python
# numpy and biopython are required -- pip install numpy biopython

from Bio import Entrez
from Bio import Medline

MAX_COUNT = 10
TERM = 'Tuberculosis'

print('Getting {0} publications containing {1}...'.format(MAX_COUNT, TERM))

## docx2md.md

      
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                gauden
                / docx2md.md
            
            
              Created
              May 26, 2017 04:33
                — forked from aembleton/docx2md.md
            
              
                Convert a Word Document into MD
              
          
    Converting a Word Document to Markdown in One Move

The Problem

A lot of important government documents are created and saved in Microsoft Word (*.docx). But Microsoft Word is a proprietary format, and it's not really useful for presenting documents on the web. So, I wanted to find a way to convert a .docx file into markdown.
Installing Pandoc

On a mac you can use homebrew by running the command brew install pandoc.
The Solution


## dlAttachments.py
# Something in lines of http://stackoverflow.com/questions/348630/how-can-i-download-all-emails-with-attachments-from-gmail
# Make sure you have IMAP enabled in your gmail settings.
# Right now it won't download same file name twice even if their contents are different.

import email
import getpass, imaplib
import os
import sys

detach_dir = '.'

## Accent.py
# https://github.com/matplotlib/matplotlib/issues/881
# Several of the ColorBrewer maps are "qualitative", meaning
# they are just a group of colors that can be used together
# for categories of data.  So I remapped Accent to segments
# instead of continuous:

# Actually, these should be used with ListedColormap, and
# the number of colors should depend on the number of
# categories in the data, with colors removed from the
# list in a certain order?

## base_62_converter.py
#!/usr/bin/env python

#
# Converts any integer into a base [BASE] number. I have chosen 62
# as it is meant to represent the integers using all the alphanumeric
# characters, [no special characters] = {0..9}, {A..Z}, {a..z}
#
# I plan on using this to shorten the representation of possibly long ids,
# a la url shortenters
#
	# Copyright 2019 Google LLC.
	# SPDX-License-Identifier: Apache-2.0

	# Author: Anton Mikhailov

	turbo_colormap_data = [[0.18995,0.07176,0.23217],[0.19483,0.08339,0.26149],[0.19956,0.09498,0.29024],[0.20415,0.10652,0.31844],[0.20860,0.11802,0.34607],[0.21291,0.12947,0.37314],[0.21708,0.14087,0.39964],[0.22111,0.15223,0.42558],[0.22500,0.16354,0.45096],[0.22875,0.17481,0.47578],[0.23236,0.18603,0.50004],[0.23582,0.19720,0.52373],[0.23915,0.20833,0.54686],[0.24234,0.21941,0.56942],[0.24539,0.23044,0.59142],[0.24830,0.24143,0.61286],[0.25107,0.25237,0.63374],[0.25369,0.26327,0.65406],[0.25618,0.27412,0.67381],[0.25853,0.28492,0.69300],[0.26074,0.29568,0.71162],[0.26280,0.30639,0.72968],[0.26473,0.31706,0.74718],[0.26652,0.32768,0.76412],[0.26816,0.33825,0.78050],[0.26967,0.34878,0.79631],[0.27103,0.35926,0.81156],[0.27226,0.36970,0.82624],[0.27334,0.38008,0.84037],[0.27429,0.39043,0.85393],[0.27509,0.40072,0.86692],[0.27576,0.41097,0.87936],[0.27628,0.42118,0.89123],[0.27667,0.43134,0.90254],[0.27691,0.44145,0.913
	#!/usr/bin/env python
	# numpy and biopython are required -- pip install numpy biopython

	from Bio import Entrez
	from Bio import Medline

	MAX_COUNT = 10
	TERM = 'Tuberculosis'

	print('Getting {0} publications containing {1}...'.format(MAX_COUNT, TERM))
	# Something in lines of http://stackoverflow.com/questions/348630/how-can-i-download-all-emails-with-attachments-from-gmail
	# Make sure you have IMAP enabled in your gmail settings.
	# Right now it won't download same file name twice even if their contents are different.

	import email
	import getpass, imaplib
	import os
	import sys

	detach_dir = '.'
	# https://github.com/matplotlib/matplotlib/issues/881
	# Several of the ColorBrewer maps are "qualitative", meaning
	# they are just a group of colors that can be used together
	# for categories of data. So I remapped Accent to segments
	# instead of continuous:

	# Actually, these should be used with ListedColormap, and
	# the number of colors should depend on the number of
	# categories in the data, with colors removed from the
	# list in a certain order?
	#!/usr/bin/env python

	#
	# Converts any integer into a base [BASE] number. I have chosen 62
	# as it is meant to represent the integers using all the alphanumeric
	# characters, [no special characters] = {0..9}, {A..Z}, {a..z}
	#
	# I plan on using this to shorten the representation of possibly long ids,
	# a la url shortenters
	#