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| { | |
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| "name": "samples" | |
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| { | |
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| { | |
| "name": "prior_malignancy", | |
| "ontology_reference": "Prior Cancer Diagnosis Occurrence Description Text", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3382736", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3382736&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "prior_treatment", | |
| "ontology_reference": "Therapeutic Procedure Prior Specimen Collection Administered Yes No Unknown Not Applicable Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "4231463", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=4231463&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "progression_or_recurrence", | |
| "ontology_reference": "New Neoplasm Event Post Initial Therapy Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3121376", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3121376&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "residual_disease", | |
| "ontology_reference": "Surgical Margin Resection Status", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2608702", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2608702&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "site_of_resection_or_biopsy", | |
| "ontology_reference": "International Classification of Diseases for Oncology, Third Edition ICD-O-3 Site Code", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3226281", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3226281&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tissue_or_organ_of_origin", | |
| "ontology_reference": "Tumor Disease Anatomic Site", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3427536", | |
| "cde_version": "3.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3427536&version=3.0" | |
| } | |
| }, | |
| { | |
| "name": "tumor_grade", | |
| "ontology_reference": "Neoplasm Histologic Grade", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2785839", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2785839&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "tumor_stage", | |
| "ontology_reference": "Tumor Stage", | |
| "values": { | |
| "source": "NCIt", | |
| "cde_id": "C16899", | |
| "term_url": "https://ncit.nci.nih.gov/ncitbrowser/pages/concept_details.jsf?dictionary=NCI%20Thesaurus&code=C16899" | |
| } | |
| }, | |
| { | |
| "name": "vascular_invasion_present", | |
| "ontology_reference": "Tumor Vascular Invasion Ind-3", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "64358", | |
| "cde_version": "3.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=64358&version=3.0" | |
| } | |
| }, | |
| { | |
| "name": "vital_status", | |
| "ontology_reference": "Patient Vital Status", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5", | |
| "cde_version": "5.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5&version=5.0" | |
| } | |
| }, | |
| { | |
| "name": "year_of_diagnosis", | |
| "ontology_reference": "Year of initial pathologic diagnosis", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2896960", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2896960&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "clinical_test", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "case", | |
| "name": "cases" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "diagnosis", | |
| "name": "diagnoses" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "biomarker_name", | |
| "ontology_reference": "Biomarker Name", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5473", | |
| "cde_version": "11.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5473&version=2.31" | |
| } | |
| }, | |
| { | |
| "name": "biomarker_result", | |
| "ontology_reference": "Laboratory Procedure Genetic Abnormality Test Result Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3234680", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3234680&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "biomarker_test_method", | |
| "ontology_reference": "Disease Detection Molecular Analysis Method Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3121575", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3121575&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "cea_level_preoperative", | |
| "ontology_reference": "Preoperative Carcinoembryonic Antigen Result Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2716510", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2716510&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "dlco_ref_predictive_percent", | |
| "ontology_reference": "Lung Carbon Monoxide Diffusing Capability Test Assessment Predictive Value Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2180255", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2180255&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "estrogen_receptor_percent_positive_ihc", | |
| "ontology_reference": "ER Level Cell Percentage Category", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3128341", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3128341&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "estrogen_receptor_result_ihc", | |
| "ontology_reference": "Breast Carcinoma Estrogen Receptor Status", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2957359", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2957359&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "fev1_ref_post_bronch_percent", | |
| "ontology_reference": "Post Bronchodilator Lung Forced Expiratory Volume 1 Test Lab Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3302948", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3302948&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "fev1_ref_pre_bronch_percent", | |
| "ontology_reference": "Pre Bronchodilator Lung Forced Expiratory Volume 1 Test Lab Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3302947", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3302947&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "fev1_fvc_post_bronch_percent", | |
| "ontology_reference": "Post Bronchodilator FEV1/FVC Percent Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3302956", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3302956&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "fev1_fvc_pre_bronch_percent", | |
| "ontology_reference": "Pre Bronchodilator FEV1/FVC Percent Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3302955", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3302955&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "her2_erbb2_percent_positive_ihc", | |
| "ontology_reference": "HER2 ERBB Positive Finding Cell Percentage Category", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3086980", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3086980&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "her2_erbb2_result_fish", | |
| "ontology_reference": "Laboratory Procedure HER2/neu in situ Hybridization Outcome Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2854089", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2854089&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "her2_erbb2_result_ihc", | |
| "ontology_reference": "Laboratory Procedure HER2/neu Immunohistochemistry Receptor Status", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2957563", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2957563&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "ldh_level_at_diagnosis", | |
| "ontology_reference": "Laboratory Procedure Lactate Dehydrogenase Result Integer::2 Decimal Place Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2798766", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2798766&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "ldh_normal_range_upper", | |
| "ontology_reference": "Laboratory Procedure Lactate Dehydrogenase Result Upper Limit of Normal Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2597015", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2597015&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "microsatellite_instability_abnormal", | |
| "ontology_reference": "Microsatellite Instability Occurrence Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3123142", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3123142&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "progesterone_receptor_percent_positive_ihc", | |
| "ontology_reference": "Progesterone Receptor Level Cell Percentage Category", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3128342", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3128342&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "progesterone_receptor_result_ihc", | |
| "ontology_reference": "Breast Carcinoma Progesterone Receptor Status", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2957357", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2957357&version=2.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "experimental_metadata", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "core_metadata_collection", | |
| "name": "core_metadata_collections" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "experiment", | |
| "name": "experiments" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "demographic", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "ONE_TO_ONE", | |
| "dst": "case", | |
| "name": "cases" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "gender", | |
| "ontology_reference": "Person Gender Text Type", | |
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| "source": "caDSR", | |
| "cde_id": "2200604", | |
| "cde_version": "3.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2200604&version=3.0" | |
| } | |
| }, | |
| { | |
| "name": "race", | |
| "ontology_reference": "Race Category Text", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2192199", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2192199&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "ethnicity", | |
| "ontology_reference": "Ethnic Group Category Text", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2192217", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2192217&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "year_of_birth", | |
| "ontology_reference": "Year Birth Date Number", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2896954", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2896954&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "year_of_death", | |
| "ontology_reference": "Year Death Number", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2897030", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2897030&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "submitted_copy_number", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "core_metadata_collection", | |
| "name": "core_metadata_collections" | |
| }, | |
| { | |
| "multiplicity": "ONE_TO_ONE", | |
| "dst": "aliquot", | |
| "name": "aliquots" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "read_group", | |
| "name": "read_groups" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "submitted_aligned_reads", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "ONE_TO_MANY", | |
| "dst": "read_group", | |
| "name": "read_groups" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "core_metadata_collection", | |
| "name": "core_metadata_collections" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "submitted_somatic_mutation", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "core_metadata_collection", | |
| "name": "core_metadata_collections" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "read_group", | |
| "name": "read_groups" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "slide", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "sample", | |
| "name": "samples" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "number_proliferating_cells", | |
| "ontology_reference": "Pathology Review Slide Proliferating Cell Count", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432636", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432636&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_tumor_cells", | |
| "ontology_reference": "Specimen Tumor Cell Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432686", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432686&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_tumor_nuclei", | |
| "ontology_reference": "Malignant Neoplasm Neoplasm Nucleus Percentage Cell Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2841225", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2841225&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_normal_cells", | |
| "ontology_reference": "Malignant Neoplasm Normal Cell Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2841233", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2841233&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_necrosis", | |
| "ontology_reference": "Malignant Neoplasm Necrosis Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2841237", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2841237&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_stromal_cells", | |
| "ontology_reference": "Malignant Neoplasm Stromal Cell Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2841241", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2841241&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_inflam_infiltration", | |
| "ontology_reference": "Specimen Inflammation Change Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2897695", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2897695&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_lymphocyte_infiltration", | |
| "ontology_reference": "Specimen Lymphocyte Infiltration Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2897710", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2897710&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_monocyte_infiltration", | |
| "ontology_reference": "Specimen Monocyte Infiltration Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5455535", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5455535&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_granulocyte_infiltration", | |
| "ontology_reference": "Specimen Granulocyte Infiltration Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2897705", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2897705&version=2.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_neutrophil_infiltration", | |
| "ontology_reference": "Malignant Neoplasm Neutrophil Infiltration Percentage Cell Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2841267", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2841267&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "percent_eosinophil_infiltration", | |
| "ontology_reference": "Specimen Eosinophilia Percentage Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2897700", | |
| "cde_version": "2.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2897700&version=2.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "keyword", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "project", | |
| "name": "projects" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "slide_count", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "slide", | |
| "name": "slides" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "treatment", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "diagnosis", | |
| "name": "diagnoses" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "days_to_treatment", | |
| "ontology_reference": "Days to Treatment Start", | |
| "values": {} | |
| }, | |
| { | |
| "name": "days_to_treatment_end", | |
| "ontology_reference": "Treatment End Subtract First Pathologic Diagnosis Day Calculation Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5102431", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5102431&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "days_to_treatment_start", | |
| "ontology_reference": "Treatment Start Subtract First Pathologic Diagnosis Time Day Calculation Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5102411", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5102411&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "therapeutic_agents", | |
| "ontology_reference": "Prior Therapy Regimen Text", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2975232", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2975232&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "treatment_anatomic_site", | |
| "ontology_reference": "Treatment Anatomic Site", | |
| "values": {} | |
| }, | |
| { | |
| "name": "treatment_intent_type", | |
| "ontology_reference": "Treatment Regimen Intent Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2793511", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2793511&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "treatment_or_therapy", | |
| "ontology_reference": "Therapeutic Procedure Prior Specimen Collection Administered Yes No Unknown Not Applicable Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "4231463", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=4231463&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "treatment_outcome", | |
| "ontology_reference": "Treatment Outcome Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5102383", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5102383&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "treatment_type", | |
| "ontology_reference": "Treatment Method Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5102381", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5102381&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "read_group", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "aliquot", | |
| "name": "aliquots" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "RIN", | |
| "ontology_reference": "Biospecimen RNA Integrity Number Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5278775", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5278775&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "program", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "core_metadata_collection", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "project", | |
| "name": "projects" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "sample", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "case", | |
| "name": "cases" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "diagnosis", | |
| "name": "diagnoses" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "biospecimen_anatomic_site", | |
| "ontology_reference": "Submitted Tumor Sample Primary Anatomic Site", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "4742851", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=4742851&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "composition", | |
| "ontology_reference": "Biospecimen Cellular Composition Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432591", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432591&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "current_weight", | |
| "ontology_reference": "Tissue Sample Current Weight Milligram Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432606", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432606&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "days_to_collection", | |
| "ontology_reference": "Biospecimen Collection Date Less Initial Pathologic Diagnosis Date Calculated Day Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3008340", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3008340&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "freezing_method", | |
| "ontology_reference": "Tissue Sample Freezing Method Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432607", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432607&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "initial_weight", | |
| "ontology_reference": "Tissue Sample Initial Weight Milligram Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432605", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432605&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "is_ffpe", | |
| "ontology_reference": "Specimen Processing Formalin Fixed Paraffin Embedded Tissue Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "4170557", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=4170557&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "method_of_sample_procurement", | |
| "ontology_reference": "Method of Sample Procurement", | |
| "values": {} | |
| }, | |
| { | |
| "name": "oct_embedded", | |
| "ontology_reference": "Tissue Sample Optimal Cutting Temperature Compound Embedding Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432538", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432538&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "preservation_method", | |
| "ontology_reference": "Tissue Sample Preservation Method Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432521", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432521&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "shortest_dimension", | |
| "ontology_reference": "Tissue Sample Short Dimension Millimeter Measurement", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432603", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432603&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "time_between_clamping_and_freezing", | |
| "ontology_reference": "Tissue Sample Clamping and Freezing Elapsed Minute Time", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432611", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432611&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "time_between_excision_and_freezing", | |
| "ontology_reference": "Tissue Sample Excision and Freezing Elapsed Minute Time", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432612", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432612&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tissue_type", | |
| "ontology_reference": "Tissue Sample Description Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "5432687", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=5432687&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tumor_descriptor", | |
| "ontology_reference": "Tumor Tissue Disease Description Type", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3288124", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3288124&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "exposure", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "case", | |
| "name": "cases" | |
| } | |
| ], | |
| "properties": [ | |
| { | |
| "name": "alcohol_history", | |
| "ontology_reference": "Alcohol Lifetime History Indicator", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2201918", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2201918&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "alcohol_intensity", | |
| "ontology_reference": "Person Self-Report Alcoholic Beverage Exposure Category", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3457767", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3457767&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "bmi", | |
| "ontology_reference": "Body Mass Index (BMI)", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "4973892", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=4973892&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "cigarettes_per_day", | |
| "ontology_reference": "Smoking Use Average Number", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2001716", | |
| "cde_version": "4.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2001716&version=4.0" | |
| } | |
| }, | |
| { | |
| "name": "height", | |
| "ontology_reference": "Patient Height Measurement", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "649", | |
| "cde_version": "4.1", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=649&version=4.1" | |
| } | |
| }, | |
| { | |
| "name": "pack_years_smoked", | |
| "ontology_reference": "Person Cigarette Smoking History Pack Year Value", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2955385", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2955385&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tobacco_smoking_onset_year", | |
| "ontology_reference": "Started Smoking Year", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2228604", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2228604&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tobacco_smoking_quit_year", | |
| "ontology_reference": "Stopped Smoking Year", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2228610", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2228610&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "tobacco_smoking_status", | |
| "ontology_reference": "Patient Smoking History Category", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "2181650", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=2181650&version=1.0" | |
| } | |
| }, | |
| { | |
| "name": "weight", | |
| "ontology_reference": "Patient Weight Measurement", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "651", | |
| "cde_version": "4.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=651&version=4.0" | |
| } | |
| }, | |
| { | |
| "name": "years_smoked", | |
| "ontology_reference": "Person Smoking Duration Year Count", | |
| "values": { | |
| "source": "caDSR", | |
| "cde_id": "3137957", | |
| "cde_version": "1.0", | |
| "term_url": "https://cdebrowser.nci.nih.gov/CDEBrowser/search?elementDetails=9&FirstTimer=0&PageId=ElementDetailsGroup&publicId=3137957&version=1.0" | |
| } | |
| } | |
| ] | |
| }, | |
| { | |
| "name": "submitted_unaligned_reads", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "read_group", | |
| "name": "read_groups" | |
| }, | |
| { | |
| "multiplicity": "MANY_TO_MANY", | |
| "dst": "core_metadata_collection", | |
| "name": "core_metadata_collections" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
| { | |
| "name": "experiment", | |
| "ontology_reference": "", | |
| "values": {}, | |
| "links": [ | |
| { | |
| "multiplicity": "MANY_TO_ONE", | |
| "dst": "project", | |
| "name": "projects" | |
| } | |
| ], | |
| "properties": [] | |
| }, | |
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