highlight2

.block

license: mit

README.md

Sankey Diagram with End-to-End Highlighting

---

Live Demo

Link: QinMing.github.io/sankey

This diagram shows the survival statistics of the Titanic disaster. The thickness of ribbons (links) represents the number of people.

• Move the mouse over nodes or links. The specific portion will be highlighted from end to end.
• Double click on the diagram to turn off rich tooltips.
• Drag the rectangles to move them.

This visualization was developed by Ming Qin, based on D3 Sankey plugin wrote by Mike Bostock (mike@ocks.org).

Features of the Visualization

1. Flow-based API and End-to-end highlighting

The original plugin take nodes and links as input, while this one has a different API. Instead of links, the input data contain flows, which have a single weight but multiple nodes in a chain. Here's an example of input data

{
    nodes: [
      {
        "name": "node0",
        "disp": "A",
      }, {
        "name": "node1",
        "disp": "B",
      }

      // ......

    ],

    flows: [
      {
        value: 50,
        thru: [ "node0", "node1"]
      }, {
        value: 30,
        thru: [ 0, 1, 2 ]
      }

      // ......

    ]
}

Compared to the link API, the flows are easier to construct because our raw data are in a multi-attribute table, where each row corresponds to a flow. Moreover, flows retain more information than links. It knows where the flow is coming from at any given place. Thus the end-to-end highlighting is made possible. Whenever the mouse hover over an element, there is a certain subset of flows going through it. Then some new links (called dlinks) are dynamically computed from this flow subset, and rendered in highlight. The endpoints of dlinks are positioned so as to make the highlighted flows look visually consistent. Though the positioning algorithm is coarse and can be improved.

The plugin is also very suitable for visualizing parallel sets. The demo shows the same data as parallel set visualization, but notice that their highlighting is very different.

2. Rich tooltips

The rich tooltip shows the subset of flows under your mouse. Double click on the diagram to switch between the rich and the simple modes.

---

Source code

Licensed under the MIT License. See LICENSE in the project root for terms

forked from gawain91's block: highlight

forked from gawain91's block: highlight2

crimea.tsv

d3.v3.min.js

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e=Math.sqrt(n/w_),r=e/2,i=e*b_,o=r,u=e*b_+e,a=-o,c=u;t.moveTo(r,i),t.lineTo(o,u),t.lineTo(a,c),t.lineTo(-.5*r-x_*i,x_*r+-.5*i),t.lineTo(-.5*o-x_*u,x_*o+-.5*u),t.lineTo(-.5*a-x_*c,x_*a+-.5*c),t.lineTo(-.5*r+x_*i,-.5*i-x_*r),t.lineTo(-.5*o+x_*u,-.5*u-x_*o),t.lineTo(-.5*a+x_*c,-.5*c-x_*a),t.closePath()}},T_=[c_,s_,h_,__,g_,m_,M_];kc.prototype={areaStart:function(){this._line=0},areaEnd:function(){this._line=NaN},lineStart:function(){this._x0=this._x1=this._y0=this._y1=NaN,this._point=0},lineEnd:function(){switch(this._point){case 3:Nc(this,this._x1,this._y1);case 2:this._context.lineTo(this._x1,this._y1)}(this._line||0!==this._line&&1===this._point)&&this._context.closePath(),this._line=1-this._line},point:function(t,n){switch(t=+t,n=+n,this._point){case 0:this._point=1,this._line?this._context.lineTo(t,n):this._context.moveTo(t,n);break;case 1:this._point=2;break;case 2:this._point=3,this._context.lineTo((5*this._x0+this._x1)/6,(5*this._y0+this._y1)/6);default:Nc(this,t,n)}this._x0=this._x1,this._x1=t,this._y0=this._y1,this._y1=n}},Sc.prototype={areaStart:Tc,areaEnd:Tc,lineStart:function(){this._x0=this._x1=this._x2=this._x3=this._x4=this._y0=this._y1=this._y2=this._y3=this._y4=NaN,this._point=0},lineEnd:function(){switch(this._point){case 1:this._context.moveTo(this._x2,this._y2),this._context.closePath();break;case 2:this._context.moveTo((this._x2+2*this._x3)/3,(this._y2+2*this._y3)/3),this._context.lineTo((this._x3+2*this._x2)/3,(this._y3+2*this._y2)/3),this._context.closePath();break;case 3:this.point(this._x2,this._y2),this.point(this._x3,this._y3),this.point(this._x4,this._y4)}},point:function(t,n){switch(t=+t,n=+n,this._point){case 0:this._point=1,this._x2=t,this._y2=n;break;case 1:this._point=2,this._x3=t,this._y3=n;break;case 2:this._point=3,this._x4=t,this._y4=n,this._context.moveTo((this._x0+4*this._x1+t)/6,(this._y0+4*this._y1+n)/6);break;default:Nc(this,t,n)}this._x0=this._x1,this._x1=t,this._y0=this._y1,this._y1=n}},Ec.prototype={areaStart:function(){this._line=0},areaEnd:function(){this._line=NaN},lineStart:function(){this._x0=this._x1=this._y0=this._y1=NaN,this._point=0},lineEnd:function(){(this._line||0!==this._line&&3===this._point)&&this._context.closePath(),this._line=1-this._line},point:function(t,n){switch(t=+t,n=+n,this._point){case 0:this._point=1;break;case 1:this._point=2;break;case 2:this._point=3;var e=(this._x0+4*this._x1+t)/6,r=(this._y0+4*this._y1+n)/6;this._line?this._context.lineTo(e,r):this._context.moveTo(e,r);break;case 3:this._point=4;default:Nc(this,t,n)}this._x0=this._x1,this._x1=t,this._y0=this._y1,this._y1=n}},Ac.prototype={lineStart:function(){this._x=[],this._y=[],this._basis.lineStart()},lineEnd:function(){var t=this._x,n=this._y,e=t.length-1;if(e>0)for(var 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global.css

/*whole page*/

body {
  color: #222;
  font-family: "PT Serif", serif;
  margin: 1em auto 1em auto;
  position: relative;
  width: 1060px;
  
 /* width: auto;
  min-width: 640px;
  max-width: 960px;*/
}

div#readme {
  width: 950px;
}

h1, h2, h3, h4, header, footer{
  color: #000;
  font-family: "PT Sans", sans-serif;
  font-weight: bold;
}

h1#title {
  font-size: 19px;
}

div#readme h1 {
  display: none;
}

header, footer {
  font-size: small;
}

a {
  color: steelblue;
}

a:not(:hover) {
  text-decoration: none;
}

img {
  max-width: 960px;
}

div.legend-item {
  font-size: 13px;
    font-family: "PT Sans", sans-serif;
  font-weight: bold;
  display: inline-block;
}


/*Diagram*/
text {
  font-family: "PT Sans", sans-serif;
}

.node rect {
  cursor: move;
  fill-opacity: .9;
  shape-rendering: crispEdges;
}

.node text {
  font: 12px sans-serif;
  font-weight: bold;
  pointer-events: none;
  text-shadow: 0 1px 0 #fff;
}

path.link {
    fill: none;
    stroke: #000;
    stroke-opacity: .1;
    stroke-linecap: butt;
}

path.highlight {
    stroke: #9aa3ee;
    stroke-opacity: .6;
   //   z-index: 1000;
}

path.highlight_red {
    stroke: #000000;
    stroke-opacity: 1;
    //  z-index: 10000000;
}

div#canvas svg{
position: relative;
left: 50%;
-webkit-transform: translateX(-50%);
-ms-transform: translateX(-50%);
transform: translateX(-50%);
}

svg#top5 {
position: relative;
left: 10%;
transform: translateX(-10%);
			}

svg#stackk {
position: relative;
right: -10%;
transform: translateX(-10%);
			}



/*Tooltips */
/*Credit: tooltip style sheets are based on c3js.org with MIT license (https://github.com/masayuki0812/c3/blob/master/LICENSE)*/
div#tooltip-container {
position: relative;
left: 50%;
-webkit-transform: translateX(-50%);
-ms-transform: translateX(-50%);
transform: translateX(-50%);
  /* 
margin: auto
display: block;
 
    pointer-events: none;
  */
}
.tooltip {
  border-collapse:collapse;
  border-spacing:0;
  background-color:#fff;
  empty-cells:show;
  -webkit-box-shadow: 7px 7px 12px -9px rgb(119,119,119);
     -moz-box-shadow: 7px 7px 12px -9px rgb(119,119,119);
          box-shadow: 7px 7px 12px -9px rgb(119,119,119);
  opacity: 0.85;
}
.tooltip tr {
  border:1px solid #CCC;
}
.tooltip td.head, .tooltip th {
  background-color: #c7e1ff;
  font-size:14px;
  padding:2px 2px;
  text-align:center;
  color:#000;
}
.tooltip td {
  font: 10px sans-serif;
  padding: 3px 3px;
  text-align:left;
  background-color:#fff;
  border-left:1px dotted #999;
}

input[type=checkbox] {
  transform: scale(1.5);
}

input.button{
  
      background-color: #4CAF50;
    border: none;
    color: white;
    padding: 3px 3px;
    text-align: center;
    text-decoration: none;
    display: inline-block;
    font-size: 14px;
    margin: 2px 2px;
    cursor: pointer;
  
}
.tooltip td.value{
  text-align: right;
}
/*little colorful squre*/
.tooltip td > span {
  display: inline-block;
  width: 6px;
  height: 11px;
  margin-right: 6px;
}
svg#top5 text{
				font-family: sans-serif;
				font-size: 10px;
    font-weight: bold;
  display: inline-block;
    text-align:center;
			}
svg#stackk text{
				font-family: sans-serif;
				font-size: 11px;
    font-weight: bold;
  display: inline-block;
    text-align:center;
			}  

svg#stackk text.label{
				font-family: sans-serif;
				font-size: 11px;
    font-weight: bold;
  display: inline-block;
    text-align:center;
  fill:white !important;
  z-index:99;position:relative;
  text-shadow: 1px 1px black;
			}  

svg#top5 title{
				font-family: sans-serif;
				font-size: 12px;
    font-weight: bold;
  display: inline-block;
    text-align:center;
			}  

    .y.axis line {
      fill: none;
    }

    .x.axis line {
      fill: none;
      stroke: #e0e0e0;
      shape-rendering: crispEdges;
    }

    .axis path {
      display: none;
    }

    .brush .extent {
      fill-opacity: .125;
      shape-rendering: crispEdges;
    }

    .resize {
      display: inline !important; /* show when empty */
      fill: #7A7A7A;
      fill-opacity: 1;
      stroke: #7A7A7A;
      stroke-width: 2px;
    }

highlight.pack.js

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index.html

<!DOCTYPE html>
<!--
-->
<html>
<head>
<meta charset="utf-8">
<title>Process Flow Sankey Diagram</title>
 
<script src="http://d3js.org/d3.v3.min.js?2.9.1"></script>
    

<script src="showdown.min.js"></script>
  
  
  
<link rel="stylesheet" href="highlightjs.css">
<script src="highlight.pack.js"></script>


<script src="https://code.jquery.com/jquery-3.3.1.min.js"></script>  
  
<script src="sankey.js"></script>
<script src="sankey-driver.js"></script>
<link rel="stylesheet" href="global.css">
  
  
</head>


  
  <style>


 

        </style>

<body oncontextmenu="return false">

<header>

</header>

<h1 id="title">Process Flow Sankey Diagram</h1>
  
 <!-- 
<div class="legend">
<div class="legend-item" style="width:8.7%; text-align:start;">Texturing</div>
<div class="legend-item" style="width:17.7%; text-align:center;">Diffusion</div>
<div class="legend-item" style="width:17.7%; text-align:center;">Etching</div>
<div class="legend-item" style="width:17.7%; text-align:center;">Annealing</div>
  <div class="legend-item" style="width:17.7%; text-align:center;">PECVD</div>
  <div class="legend-item" style="width:8.7%; text-align:end;">Printing</div>
</div>

-->
  
<div id='canvas'></div>


  

  
<script>

var driver = new SankeyDriver();
d3.json('titanic-data.json', function(titanicData){
  var margin = {
    top: 0, bottom: 10, left: 10, right: 10,
  };
  var size = {
    width:880, height: 420,
  }
  driver.prepare(d3.select("#canvas"), size, margin);
  driver.draw(titanicData);
});

</script>

 
 
    <body>

<div class="dviz" id="dviz-hbar"></div>
        
  </body>  
  
<footer>

</footer>
</body>
</html>

sankey - Copy.js

//Author: Ming Qin (https://github.com/QinMing) at Yahoo Inc.
//This file was forked from Mike Bostock's [D3 Sankey plugin](https://github.com/d3/d3-plugins/tree/master/sankey)
//which is licensed under the BSD License at https://github.com/mbostock/d3/blob/master/LICENSE

d3.sankey = function() {
  var sankey = {},
      nodeWidth = 24,
      nodePadding = 8,
      size = [1, 1],
      nodes = [],
      flows = [],
      links = [],
      linkDict = {},
      dflows = [], //dynamic links
      dlinks = [],
      dlinkDict = {},
      ky = 0;

  sankey.nodeWidth = function(_) {
    if (!arguments.length) {
      return nodeWidth;
    }
    nodeWidth = +_;
    return sankey;
  };

  sankey.nodePadding = function(_) {
    if (!arguments.length) {
      return nodePadding;
    }
    nodePadding = +_;
    return sankey;
  };

  sankey.nodes = function(_) {
    if (!arguments.length) {
      return nodes;
    }
    nodes = _;
    return sankey;
  };

  sankey.links = function(_) {
    if (!arguments.length) {
      return links;
    }
    links = _;
    return sankey;
  };

  sankey.size = function(_) {
    if (!arguments.length) {
      return size;
    }
    size = _;
    return sankey;
  };

  sankey.layout = function(iterations) {
    computeNodeLinks();
    computeNodeValues();
    computeNodeBreadths();
    computeNodeDepths(iterations);
    computeLinkDepths();
    return sankey;
  };

  sankey.relayout = function() {
    computeLinkDepths();
    computeDlinks();
    return sankey;
  };

  sankey.link = function() {
    var curvature = 0.5;

    function link(d) {
      var x0 = d.source.x + d.source.dx,
          x1 = d.target.x,
          xi = d3.interpolateNumber(x0, x1),
          x2 = xi(curvature),
          x3 = xi(1 - curvature),
          y0 = d.source.y + d.sy + d.dy / 2,
          y1 = d.target.y + d.ty + d.dy / 2;
      return "M" + x0 + "," + y0 +
             "C" + x2 + "," + y0 +
             " " + x3 + "," + y1 +
             " " + x1 + "," + y1;
    }

    link.curvature = function(_) {
      if (!arguments.length) return curvature;
      curvature = +_;
      return link;
    };

    return link;
  };

  // Populate the sourceLinks and targetLinks for each node.
  // Also, if the source and target are not objects, assume they are indices.
  function computeNodeLinks() {
    nodes.forEach(function(node) {
      node.sourceLinks = [];
      node.targetLinks = [];
    });
    links.forEach(function(link) {
      var source = link.source,
          target = link.target;
      // if (typeof source === "number") source = link.source = nodes[link.source];
      // if (typeof target === "number") target = link.target = nodes[link.target];
      source.sourceLinks.push(link);
      target.targetLinks.push(link);
    });
  }

  // Compute the value (size) of each node by summing the associated links.
  function computeNodeValues() {
    nodes.forEach(function(node) {
      node.value = Math.max(
        d3.sum(node.sourceLinks, value),
        d3.sum(node.targetLinks, value)
      );
    });
  }

  // Iteratively assign the breadth (x-position) for each node.
  // Nodes are assigned the maximum breadth of incoming neighbors plus one;
  // nodes with no incoming links are assigned breadth zero, while
  // nodes with no outgoing links are assigned the maximum breadth.
  function computeNodeBreadths() {
      var remainingNodes = nodes,
          nextNodes,
          x = 0;

      function pick_node(node) {
          node.x = x;
          node.dx = nodeWidth;
          node.sourceLinks.forEach(push_if_didnt);
      }

      function push_if_didnt(link) {
          if (nextNodes.indexOf(link.target) < 0) {
              nextNodes.push(link.target);
          }
      }

      while (remainingNodes.length) {
          nextNodes = [];
          remainingNodes.forEach(pick_node);
          remainingNodes = nextNodes;
          ++x;
      }

      //
      moveSinksRight(x);
      scaleNodeBreadths((size[0] - nodeWidth) / (x - 1));
  }

  function moveSourcesRight() {
    nodes.forEach(function(node) {
      if (!node.targetLinks.length) {
        node.x = d3.min(node.sourceLinks, function(d) { return d.target.x; }) - 1;
      }
    });
  }

  function moveSinksRight(x) {
    nodes.forEach(function(node) {
      if (!node.sourceLinks.length) {
        node.x = x - 1;
      }
    });
  }

  function scaleNodeBreadths(kx) {
    nodes.forEach(function(node) {
      node.x *= kx;
    });
  }

  function computeNodeDepths(iterations) {
    var nodesByBreadth = d3.nest()
        .key(function(d) { return d.x; })
        .sortKeys(d3.ascending)
        .entries(nodes)
        .map(function(d) { return d.values; });

    //
    initializeNodeDepth();
    resolveCollisions();
    for (var alpha = 1; iterations > 0; --iterations) {
      relaxRightToLeft(alpha *= 0.99);
      resolveCollisions();
      relaxLeftToRight(alpha);
      resolveCollisions();
    }

    function initializeNodeDepth() {
      ky = d3.min(nodesByBreadth, function(nodes) {
        return (size[1] - (nodes.length - 1) * nodePadding) / d3.sum(nodes, value);
      });

      nodesByBreadth.forEach(function(nodes) {
        nodes.forEach(function(node, i) {
          node.y = i;
          node.dy = node.value * ky;
        });
      });

      links.forEach(function(link) {
        link.dy = link.value * ky;
      });
    }

    function relaxLeftToRight(alpha) {
      nodesByBreadth.forEach(function(nodes, breadth) {
        nodes.forEach(function(node) {
          if (node.targetLinks.length) {
            var y = d3.sum(node.targetLinks, weightedSource) / d3.sum(node.targetLinks, value);
            node.y += (y - center(node)) * alpha;
          }
        });
      });

      function weightedSource(link) {
        return center(link.source) * link.value;
      }
    }

    function relaxRightToLeft(alpha) {
      nodesByBreadth.slice().reverse().forEach(function(nodes) {
        nodes.forEach(function(node) {
          if (node.sourceLinks.length) {
            var y = d3.sum(node.sourceLinks, weightedTarget) / d3.sum(node.sourceLinks, value);
            node.y += (y - center(node)) * alpha;
          }
        });
      });

      function weightedTarget(link) {
        return center(link.target) * link.value;
      }
    }

    function resolveCollisions() {
      nodesByBreadth.forEach(function(nodes) {
        var node,
            dy,
            y0 = 0,
            n = nodes.length,
            i;

        // Push any overlapping nodes down.
        nodes.sort(ascendingDepth);
        for (i = 0; i < n; ++i) {
          node = nodes[i];
          dy = y0 - node.y;
          if (dy > 0) node.y += dy;
          y0 = node.y + node.dy + nodePadding;
        }

        // If the bottommost node goes outside the bounds, push it back up.
        dy = y0 - nodePadding - size[1];
        if (dy > 0) {
          y0 = node.y -= dy;

          // Push any overlapping nodes back up.
          for (i = n - 2; i >= 0; --i) {
            node = nodes[i];
            dy = node.y + node.dy + nodePadding - y0;
            if (dy > 0) node.y -= dy;
            y0 = node.y;
          }
        }
      });
    }
  }

  function ascendingDepth(a, b) {
    return a.y - b.y;
  }

  function computeLinkDepths() {
    nodes.forEach(function(node) {
      node.sourceLinks.sort(ascendingTargetDepth);
      node.targetLinks.sort(ascendingSourceDepth);
    });
    nodes.forEach(function(node) {
      var sy = 0, ty = 0;
      node.sourceLinks.forEach(function(link) {
        link.sy = sy;
        sy += link.dy;
      });
      node.targetLinks.forEach(function(link) {
        link.ty = ty;
        ty += link.dy;
      });
    });
  }

  function ascendingSourceDepth(a, b) {
    return a.source.y - b.source.y;
  }

  function ascendingTargetDepth(a, b) {
    return a.target.y - b.target.y;
  }

  function center(node) {
    return node.y + node.dy / 2;
  }

  function value(link) {
    return link.value;
  }

  //////////////////////////////
  // The Flow API
  ////////////////////////////

  //will modify linkDict, links, flows
  sankey.flows = function(_) {
    if (!arguments.length) return flows;
    if (!nodes.length) console.error(
      'sankey.nodes() must be called before flows(). ' +
      'Or maybe matric has no positive value');
    flows = _;
    linkDict = {};

    flows.forEach(function (f, ind) {

      //normalize nodes in f.thru
      f.thru = f.thru.map(function (n) {
        if (typeof n === "object") {
          return n;
        } else if (typeof n === "number") {
          return nodes[n];
        } else if (typeof n === "string"){
          return nodes.filter(function(node){
            return node.name === n;
          })[0];
        } else {
          console.error('not supported node type');
          return null;
        }
      });

      //build index in nodes, pointing back to f
      f.thru.forEach(function (n) {
        if (!n.flows){
          n.flows = {};
        }
        n.flows[ind] = true;
      });

      //extract links
      for (var i = 0; i < f.thru.length - 1; i++) {
        var key = stPair(f.thru[i], f.thru[i + 1]);
        if (linkDict[key]) {
          linkDict[key].value += Number(f.value);
          linkDict[key].flows.push(f);
        } else {
          linkDict[key] = {
            source: f.thru[i],
            target: f.thru[i + 1],
            value: Number(f.value),
            flows: [f],
          };
        }

      }
    });
    nodes.forEach(function (n) {
      var sets = n.flows;
      n.flows = [];
      for (var i in sets){
        n.flows.push(flows[i]);
      }
    });

    links = [];
    for (var key in linkDict) {
      var l = linkDict[key];
      links.push(l);
    }

    return sankey;
  };

  //will modify dlinks
  sankey.dflows = function(_) {
    if (!arguments.length) {
      return dflows;
    }
    dflows = _;
    dlinkDict = {};
    dflows.forEach(function (f) {
      for (var i = 0; i < f.thru.length - 1; i++) {
        var key = stPair(f.thru[i], f.thru[i + 1]);
        if (dlinkDict[key]) {
          dlinkDict[key].value += Number(f.value);
        } else {
          dlinkDict[key] = {
            source: f.thru[i],
            target: f.thru[i + 1],
            value: Number(f.value),
            sy: linkDict[key].sy,
            ty: linkDict[key].ty,
          };
        }
      }
    });
    dlinks = [];
    for (var key in dlinkDict) {
      var l = dlinkDict[key];
      l.dy = l.value * ky;
      dlinks.push(dlinkDict[key]);
    }
    this.relayout();
    return sankey;
  };

  sankey.dlinks = function() {
    return dlinks;
  };

  function stPair(s, t) {
    if (typeof s === 'number') {
      return nodes[s].name + '|' + nodes[t].name ;
    } else if (typeof s === 'object') {
      return s.name + '|' + t.name;
    } else if (typeof s === 'string'){
      return s + '|' + t;
    } else {
      console.error('wrong type');
    }
  }

  //compute the starting and ending point (y) for each dynamic link
  function computeDlinks() {
    for (var k = dflows.length-1 ; k>=0; k--){
      var f = dflows[k];
      for (var i = 1; i < f.thru.length - 1; i++) {
        var center, commonBot, commonTop, ddy0, ddy1, dsy1, dty0, dy0, dy1, sy1,
          key0, key1, link0, link1, dlink0, dlink1, ty0;
        key0 = stPair(f.thru[i - 1], f.thru[i]);
        key1 = stPair(f.thru[i], f.thru[i + 1]);
        link0 = linkDict[key0];
        link1 = linkDict[key1];
        dlink0 = dlinkDict[key0];
        dlink1 = dlinkDict[key1];
        ty0 = link0.ty;
        dy0 = link0.dy;
        sy1 = link1.sy;
        dy1 = link1.dy;
        ddy0 = dlink0.dy;
        ddy1 = dlink1.dy;
        // compute the ideal position of both links on two sides
        commonTop = Math.max(ty0, sy1);
        commonBot = Math.min(ty0 + dy0, sy1 + dy1);
        center = (commonTop + commonBot) / 2;
        dty0 = center - (ddy0 / 2);
        dsy1 = center - (ddy1 / 2);
        // limit the position
        dty0 = Math.max(dty0, ty0);
        dty0 = Math.min(dty0, ty0 + dy0 - ddy0);
        dsy1 = Math.max(dsy1, sy1);
        dsy1 = Math.min(dsy1, sy1 + dy1 - ddy1);
        // set y
        dlink0.ty = dty0;
        dlink1.sy = dsy1;
        if (!dlink0.sy){
          dlink0.sy = link0.sy - (link0.ty - dlink0.ty);
        }
        dlink1.ty = link1.ty - (link1.sy - dlink1.sy);
      }
    }
  }
  return sankey;
};

sankey-driver.js

// Author: Ming Qin (https://github.com/QinMing)
// Copyright 2015 Yahoo Inc.
// This file is licensed under the MIT License. See LICENSE in the project root for terms

/*global d3*/

var SankeyDriver = function (){
  var sankey = d3.sankey();
  var formatNumber = d3.format(","); //(",.2f");
  
  machlist=["ANNL01","ANNL02","ANNL03","ANNL04","ANNL05","DIFF01","DIFF02","DIFF03","DIFF04","DIFF05","ETCH01","ETCH02","ETCH03","ETCH04","ETCH05","FCOT01","FCOT02","FCOT03","FCOT04","FCOT05","MAIA00","MAIA01","MAIA02","MAIA03","MAIA04","MAIA05","PRNT01A","PRNT01B","PRNT02A","PRNT02B","PRNT03A","PRNT03B","PRNT04A","PRNT04B","TEXT01","TEXT02","TEXT03","TEXT04"];

colorlist=["MediumOrchid","Indigo","Orchid","DarkViolet","DarkMagenta","LightSalmon ","Coral","Tomato","OrangeRed","DarkOrange","MediumSlateBlue ","SteelBlue ","MediumBlue","DarkBlue","CornflowerBlue","Crimson","FireBrick","Maroon ","SaddleBrown","Sienna","Black","Cyan","DarkTurquoise","DeepSkyBlue","MediumTurquoise","PowderBlue","Green","Lime","LawnGreen","SeaGreen","PaleGreen","MediumSeaGreen","LimeGreen","SpringGreen","Gold","Khaki","GoldenRod","DarkGoldenRod"];     
  
  
  var color = d3.scale.ordinal()
    .domain(machlist)
  .range(colorlist)  ;
 
  var graph, width, height;
  var tooltips = [];
  var tooltipEnable = true;
  var tooltipContainer, tbody,barchart,svg,stacked;

  this.prepare = function (canvas, sz, margin) {
    width = sz.width - margin.left - margin.right;
    height= sz.height - margin.top - margin.bottom;

    graph = canvas
      .html('')
      .append('svg')
        .attr("width", sz.width)
        .attr("height", sz.height)
      .append("g")
        .attr("transform", "translate(" + margin.left + "," + margin.top + ")");

    tooltipContainer = canvas
      .append('div')
        .attr('id', 'tooltip-container');
   
    
       barchart = canvas
      .append('div')
        .attr('class', 'dviz-hbar');
    

    
    tbody = tooltipContainer
      .append('table')
        .attr('class', 'tooltip')
    
      .append('tbody');
  };

  
  this.draw = function (inputdata) {

    sankey
      .nodeWidth(10)
      .nodePadding(10)
      .size([width, height]);

    sankey.nodes(inputdata.nodes)
      .flows(inputdata.flows)
      .layout(32);

    drawNode(sankey.nodes());
    drawLink(sankey.links());

    function drawNode(nodes) {
      var group = graph.selectAll('g#node-group').data([0]);
      group.enter().append('g').attr("id", "node-group");
      var node = group.selectAll("g.node").data(nodes);
      node.exit().remove();

      var nodeEnter = node.enter().append("g")
        .attr("class", "node")
            .on("click", funcMouseover)
      .on("contextmenu", funcMouseout)
     //   .on("mouseover", funcMouseover)
     //   .on("mouseout", funcMouseout)
     //   .on('mousemove', funcMousemove)
     //   .on('dblclick', funcTooltipToggle)
        .call(d3.behavior.drag()
          .origin(function (d) {
            return d;
          })
   /*       .on("dragstart", function () {
            d3.event.sourceEvent.stopPropagation();
            this.parentNode.appendChild(this);
          })   */
          .on("drag", function dragmove(d) {
            d3.select(this).attr("transform",
              "translate(" + (
                d.x = Math.max(0, Math.min(width - d.dx, d3.event.x))
              ) + "," + (
                d.y = Math.max(0, Math.min(height - d.dy, d3.event.y))
              ) + ")");
            sankey.relayout();
            graph.select('g#normal').selectAll('path').attr("d", sankey.link());
            graph.select('g#highlight').selectAll('path').attr("d", sankey.link());
          })
        );
      nodeEnter.append("rect");//.append('title');
      nodeEnter.append("text");




      node
        .attr("transform", function (d) {
          return "translate(" + d.x + "," + d.y + ")";
        });

      node.select('rect')
        .attr("height", function (d) {
          return d.dy;
        })
        .attr("width", sankey.nodeWidth())
        .style("fill", function (d) {
          if (!d.color){
            d.color = color(d.disp);
          }
          return d.color;
        })
        .style("stroke", function (d) {
          return d3.rgb(d.color).darker(2);
        });
        // .select("title")
        // .text(function (d) {
        //   var text = formatNumber(d.value) + '\t' + d.disp;
        //   return text;
        // });

      node.select("text")
        .attr("x", -6)
        .attr("y", function (d) {
          return d.dy / 2;
        })
        .attr("dy", ".35em")
        .attr("text-anchor", "end")
        .attr("transform", null)
        .text(function (d) {
        if(d.dy!=0){
        return d.disp;}
        })
        .filter(function (d) {
          return d.x < width / 2;
        })
        .attr("x", 6 + sankey.nodeWidth())
        .attr("text-anchor", "start");
    }

    function drawLink(data) {
      var group = graph.selectAll('g#normal').data([0]);
      group.enter().insert("g", ":first-child").attr('id', 'normal');
      var link = group.selectAll('path.link').data(data);
      link.exit().remove();

      link.enter().append("path")
        .attr("class", "link")
      //      .on("click", funcMouseover)
      .on("contextmenu", funcMouseout)
     //   .on("mouseover", funcMouseover)
     //   .on("mouseout", funcMouseout)
     //   .on('mousemove', funcMousemove)
     
        
        .on('dblclick', red_checked)
        // .append("title");

      link
        .attr("d", sankey.link())
        .style("stroke-width", function (d) {
          return Math.max(1, d.dy);
        })
        .sort(function (a, b) {
          return b.dy - a.dy;
        });

    }

    function drawDLink(data) {
      return graph.insert("g", ":first-child")
        .attr('id', 'highlight')
        .selectAll('path')
        .data(data)
        .enter()
        .append("path")
          .attr("class", "link highlight")
          .attr("d", sankey.link())
          .style("stroke-width", function (d) {
            return Math.max(1, d.dy);
          })
          .sort(function (a, b) {
            return b.dy - a.dy;
          });
    }

    function drawRLink(data) {
      return graph.insert("g", ":first-child")
        .attr('id', 'highlight2')
        .selectAll('path')
        .data(data)
        .enter()
        .append("path")
          .attr("class", "link highlight_red")
          .attr("d", sankey.link())
          .style("stroke-width", function (d) {
            return Math.max(1, d.dy);
          })
          .sort(function (a, b) {
            return b.dy - a.dy;
          });
    }
    
    function funcMouseover(d) {
      
      graph.selectAll("g#highlight").remove();
      d3.select("#top5").remove();
      d3.select("#stackk").remove();
      tooltipContainer.style('display', 'none');

      
  red2=[];
  
  for (var i = 0; i < d.flows.length; i++) { 
  red2.push(d.flows[i])
  }
      
      
      sankey.dflows(d.flows);
      drawDLink(sankey.dlinks());
      
    
      
      updateTooltip(d);
      
      drawChart2(d)
      drawChart3(d)
      tooltipContainer.style('display', 'inline-block')
      .style('height', 200 + 'px')
      .style("overflow-y", "scroll");
      
      
    }
    function funcMouseout() {
      graph.selectAll("g#highlight").remove();
      tooltipContainer.style('display', 'none');
      d3.select("#top5").remove();
      d3.select("#stackk").remove();
    }
    function funcMousemove() {
      tooltipContainer
        .style('top', d3.event.clientY + 'px')
        .style('left', d3.event.clientX + 'px');
        
        
    }
    function funcTooltipToggle(d){
      tooltipEnable = !tooltipEnable;
      updateTooltip(d);
    }

     function red_checked(d){
  
  red=[];
  for (var i = 1; i < red2.length+1; i++) {
  var checkBox = document.getElementById("chk_" +i);
  if (checkBox.checked == true){
  red.push(red2[i-1])
  }
}
    var sankey = d3.sankey();
      sankey.dflows2(d.flows);
      drawDLink(sankey.dlinks());
}   
    
    
   
            function drawChart2(d) {
              
              
 var line_summary= [];
 var line_summary=d.summary;         
 var data=[];
 var machine=[];       
               
              
for (var i=0, len=line_summary.length-1;i<8;i++){
  
  if(line_summary[i].machine!=d.disp){
  data.push({value:line_summary[i].percent,name:line_summary[i].machine})
  }           
};
              
        //sort bars based on value
        data = data.sort(function (a, b) {
            return d3.ascending(a.value, b.value);
        })

        
        var margin = {
            top: 25,
            right: 35,
            bottom: 15,
            left: 60
        };

        var width = 420 - margin.left - margin.right,
            height = 200 - margin.top - margin.bottom;

        var x = d3.scale.linear()
            .range([0, width])
            .domain([0, d3.max(data, function (d) {
                return d.value;
            })]);

        var y = d3.scale.ordinal()
            .rangeRoundBands([height, 0], .1)
            .domain(data.map(function (d) {
                return d.name;
            }));
        
         
              
              
              
var svg = d3.select("#dviz-hbar").append("svg")
            .attr("width", width + margin.left + margin.right)
            .attr("height", height + margin.top + margin.bottom)
.attr("id","top5")
            .append("g")
            .attr("transform", "translate(" + margin.left + "," + margin.top + ")");
              
        //make y axis to show bar names
        var yAxis = d3.svg.axis()
            .scale(y)
            //no tick marks
            .tickSize(0)
            .orient("left");

        var gy = svg.append("g")
            .attr("class", "y axis")
            .call(yAxis)

        var bars = svg.selectAll(".bar")
            .data(data);
              
   bars.exit().remove();           
bars.enter().append("g");
bars.transition()
.duration(500);
     
              
        //append rects
        bars.append("rect")
            .attr("class", "bar")
            .attr("y", function (d) {
                return y(d.name);
            })
            .attr("height", y.rangeBand())
            .attr("x", 0)
            .attr("width", function (d) {
                return x(d.value);
            })
        .style("fill", function(d) { 
           for (var g = 0; g < machlist.length; g++){
          if(d.name==machlist[g]){
             return colorlist[g]; }
        }
        });
               
        //add a value label to the right of each bar
        bars.append("text")
            .attr("class", "label")
            //y position of the label is halfway down the bar
            .attr("y", function (d) {
                return y(d.name) + y.rangeBand() / 2 + 4;
            })
       
            //x position is 3 pixels to the right of the bar
            .attr("x", function (d) {
                return x(d.value) + 3;
            })
            .text(function (d) {
                return d.value +'%';
            });
          
              var title = svg.append("g")
     	.attr("class", "title")
     	.attr("transform", "translate(" + [0, -margin.top / 4] + ")")
     
 /*    title.append("text")
     	.attr("text-anchor", "stat")
     	.text("Top Machines with Similar Process Flows");
     
              
      */        
            }

    

    
 
             function drawChart3(d) { 
  
               
 var line_summary= [];
 var line_summary=d.summary;         
 var data2=[];
               
//   var machineid = ["TEXT01","TEXT02", "TEXT03","TEXT04","DIFF01","DIFF02","DIFF03","DIFF04","DIFF05","ETCH01","ETCH02","ETCH03","ETCH04","ANNL01","ANNL02","ANNL03","ANNL04","ANNL05","FCOT01","FCOT02","FCOT03","FCOT04","FCOT05","PRNT01A","PRNT01B","PRNT02A","PRNT02B","PRNT03A","PRNT03B","PRNT04A","PRNT04B"];             

               
var machineid = machlist
          
var groups = [];
for (var i = 0; i < line_summary.length; i++) {
  var groupName = line_summary[i].process;
  var perc=line_summary[i].percent;
  if (!groups[groupName]) {
    groups[groupName] = [];
  }
  groups[groupName].push({[line_summary[i].machine]:line_summary[i].value});
}
data = [];
               myArray2 = [];
for (var groupName in groups) {
  groups[groupName].push({date: groupName})
  

  
 for (var j = 0; j < machineid.length; j++) { 
    if (!myArray2[groupName]) {
    myArray2[groupName] = [];
  }
         myArray2[groupName].push({[machineid[j]]:0}); 
  
  
 }
  
for (var k = 0; k < groups[groupName].length;k++) { 
  myArray2[groupName].push(groups[groupName][k]); 
  } 
  
  ;
  
       resultObject=[];
var resultObject = myArray2[groupName].reduce(function(result, currentObject) {
    for(var key in currentObject) {
        if (currentObject.hasOwnProperty(key)) {
            result[key] = currentObject[key];
        }
    }
    return result;
}, {});

  data.push(resultObject);
}               
  
  


var margin = {top: 25, right: 5, bottom: 15, left: 70},
    width = 420 - margin.left - margin.right,
    height = 200 - margin.top - margin.bottom;

  
var x = d3.scale.linear()
            .range([0, width]);

var y = d3.scale.ordinal()
            .rangeRoundBands([height, 0], .1);  
 

//var z = d3.scale.category10();

var z = color;

var xAxis = d3.svg.axis()
    .scale(x)
    .orient("bottom")

var yAxis = d3.svg.axis()
    .scale(y)
    .orient("left");

var stacked = d3.select("#dviz-hbar").append("svg")
    .attr("width", width + margin.left + margin.right)
    .attr("height", height + margin.top + margin.bottom)
  .attr("id","stackk")
  .append("g")

    .attr("transform", "translate(" + margin.left + "," + margin.top + ")");


  var layers = d3.layout.stack()(machineid.map(function(c) {
    
    return data.map(function(d) {
  d[c] = +d[c]; 
      return {x: d.date, y: d[c]};
      
   
    });
  }));
               
               
  y.domain(layers[0].map(function(d) { return d.x; }));
  x.domain([0, d3.max(layers[layers.length - 1], function(d) { return d.y0 + d.y; })]).nice();
// x.domain([0, 100]).nice();
  
 
  
  var layer = stacked.selectAll(".layer")
      .data(layers)
    .enter().append("g")
      .attr("class", "layer")

      .style("fill", function(d, i) { return z(i); });

  layer.selectAll("rect")
      .data(function(d) { return d; })
    .enter().append("rect")
  .attr("class", "bar")
      .attr("y", function(d) { return y(d.x); })
      .attr("x", function(d) {return x(d.y0); })
      .attr("width", function(d) {return x(d.y); })
      .attr("height", y.rangeBand()-2)


;             
                        
               
               
  stacked.append("g")
      .attr("class", "axis axis--x")
      .attr("transform", "translate(0," + width + ")")
      .call(xAxis);

  stacked.append("g")
      .attr("class", "axis axis--y")
      .attr("transform", "translate(" + 0 + ",0)")
      .call(yAxis);
               
               
  for (var j = 0; j < layers[0].length; j++) { 
                
        layer.append("text")
            .attr("class", "label")
            .attr("y", function(d) {return y(d[j].x)+13
 })
            .attr("x", function(d) {return x(d[j].y0)+x(d[j].y)/2-17})
        
            .text(function (d,k) {  
          if(d[j].y!=0 && x(d[j].y)>35){
          return 'L' + machlist[k].substring(5) + ':' + d[j].y;
            }}); 
} };



    
    ///////////////////////
    //// Tooltips

    
    function colorDot(d){
      return '<span style="background-color:'+ d.color +'"></span>';
    }

    




    
    
    sankey.nodes().forEach(function(n){
      n.summary=sankey.dflows(n.flows);
      n.tooltip = {
        name: formatNumber(n.value) + " Lot(s) through " +colorDot(n) + n.disp,
        value: formatNumber(n.value),
        lts: "LTS No.",
        head: true,
      };
    });
    sankey.links().forEach(function(l){
      l.tooltip = {
        name: colorDot(l.source) + l.source.disp +
          " → " + colorDot(l.target) + l.target.disp,
        value: formatNumber(l.value),
        head: true,
      };
    });
    sankey.flows().forEach(function(f){
      var name = "";
      f.thru.forEach(function (n, ind) {
        if (ind !== 0) name += ' → ';
        name += colorDot(n) + n.disp +" "+ f.time[ind];
      });
      
      

      
 var lts=f.LTS;
      f.tooltip = {
        name: name,
        lts: lts,
      };
    });

             
    
    
    //param d: data, could be node or link
    function updateTooltip(d){

      tooltips = [d.tooltip];
      if (tooltipEnable){
        d.flows.forEach(function(f){
          tooltips.push(f.tooltip);
        });
      }

      //no need to use D3
      tbody.selectAll('*').remove();
      tooltips.forEach(function(tip,i){
        var tr = tbody.append('tr');
        
        
        
        if (i!=0){
        var chk="<td><input type='checkbox' name='foo' id='chk_"+i+"' /></td>";
        }
        
        else{
        
        var chk = "<td><input type='checkbox' id='chk' onclick='check_all(this)'></td>";
          var lts = "LTS No.";
          
        };
        
        tr.append('td')
       //   .attr('class', 'chkbox')
          .classed('head', 'head' in tip)
          .html(chk);
        tr.append('td')
          .attr('class', 'lts')
          .classed('head', 'head' in tip)
          .html(tip.lts);
        tr.append('td')
          .attr('class', 'name')
          .classed('head', 'head' in tip)
          .html(tip.name);

      });
    }
  };
};

function check_all(source){
  
  
  checkboxes = document.getElementsByName('foo');
  for(var i=0, n=checkboxes.length;i<n;i++) {
  checkboxes[i].checked = source.checked;
  
}
}

sankey.js

//Author: Ming Qin (https://github.com/QinMing) at Yahoo Inc.
//This file was forked from Mike Bostock's [D3 Sankey plugin](https://github.com/d3/d3-plugins/tree/master/sankey)
//which is licensed under the BSD License at https://github.com/mbostock/d3/blob/master/LICENSE

d3.sankey = function() {
  var sankey = {},
      nodeWidth = 24,
      nodePadding = 8,
      size = [1, 1],
      nodes = [],
      flows = [],
      links = [],
      linkDict = {},
      dflows = [], //dynamic links
      dlinks = [],
       dsize = [],
      dlinkDict = {},
      ky = 0;

  sankey.nodeWidth = function(_) {
    if (!arguments.length) {
      return nodeWidth;
    }
    nodeWidth = +_;
    return sankey;
  };

  sankey.nodePadding = function(_) {
    if (!arguments.length) {
      return nodePadding;
    }
    nodePadding = +_;
    return sankey;
  };

  sankey.nodes = function(_) {
    if (!arguments.length) {
      return nodes;
    }
    nodes = _;
    return sankey;
  };

  sankey.links = function(_) {
    if (!arguments.length) {
      return links;
    }
    links = _;
    return sankey;
  };

  sankey.size = function(_) {
    if (!arguments.length) {
      return size;
    }
    size = _;
    return sankey;
  };

  sankey.layout = function(iterations) {
    computeNodeLinks();
    computeNodeValues();
    computeNodeBreadths();
    computeNodeDepths(iterations);
    computeLinkDepths();
    return sankey;
  };

  sankey.relayout = function() {
    computeLinkDepths();
    
    computeDlinks();
    return sankey;
  };

  sankey.link = function() {
    var curvature = 0.5;

    function link(d) {
      var x0 = d.source.x + d.source.dx,
          x1 = d.target.x,
          xi = d3.interpolateNumber(x0, x1),
          x2 = xi(curvature),
          x3 = xi(1 - curvature),
          y0 = d.source.y + d.sy + d.dy / 2,
          y1 = d.target.y + d.ty + d.dy / 2;
      return "M" + x0 + "," + y0 +
             "C" + x2 + "," + y0 +
             " " + x3 + "," + y1 +
             " " + x1 + "," + y1;
    }

    link.curvature = function(_) {
      if (!arguments.length) return curvature;
      curvature = +_;
      return link;
    };

    return link;
  };

  // Populate the sourceLinks and targetLinks for each node.
  // Also, if the source and target are not objects, assume they are indices.
  function computeNodeLinks() {
    nodes.forEach(function(node) {
      node.sourceLinks = [];
      node.targetLinks = [];
    });
    links.forEach(function(link) {
      var source = link.source,
          target = link.target;
      // if (typeof source === "number") source = link.source = nodes[link.source];
      // if (typeof target === "number") target = link.target = nodes[link.target];
      source.sourceLinks.push(link);
      target.targetLinks.push(link);
    });
  }

  // Compute the value (size) of each node by summing the associated links.
  function computeNodeValues() {
    nodes.forEach(function(node) {
      node.value = Math.max(
        d3.sum(node.sourceLinks, value),
        d3.sum(node.targetLinks, value)
      );
    });
  }

  // Iteratively assign the breadth (x-position) for each node.
  // Nodes are assigned the maximum breadth of incoming neighbors plus one;
  // nodes with no incoming links are assigned breadth zero, while
  // nodes with no outgoing links are assigned the maximum breadth.
  function computeNodeBreadths() {
      var remainingNodes = nodes,
          nextNodes,
          x = 0;

      function pick_node(node) {
          node.x = x;
          node.dx = nodeWidth;
          node.sourceLinks.forEach(push_if_didnt);
      }

      function push_if_didnt(link) {
          if (nextNodes.indexOf(link.target) < 0) {
              nextNodes.push(link.target);
          }
      }

      while (remainingNodes.length) {
          nextNodes = [];
          remainingNodes.forEach(pick_node);
          remainingNodes = nextNodes;
          ++x;
      }

      //
      moveSinksRight(x);
      scaleNodeBreadths((size[0] - nodeWidth) / (x - 1));
  }

  function moveSourcesRight() {
    nodes.forEach(function(node) {
      if (!node.targetLinks.length) {
        node.x = d3.min(node.sourceLinks, function(d) { return d.target.x; }) - 1;
      }
    });
  }

  function moveSinksRight(x) {
    nodes.forEach(function(node) {
      if (!node.sourceLinks.length) {
        node.x = x - 1;
      }
    });
  }

  function scaleNodeBreadths(kx) {
    nodes.forEach(function(node) {
      node.x *= kx;
    });
  }

  function computeNodeDepths(iterations) {
    var nodesByBreadth = d3.nest()
        .key(function(d) { return d.x; })
        .sortKeys(d3.ascending)
        .entries(nodes)
        .map(function(d) { return d.values; });

    //
    initializeNodeDepth();
    resolveCollisions();
    for (var alpha = 1; iterations > 0; --iterations) {
      relaxRightToLeft(alpha *= 0.99);
      resolveCollisions();
      relaxLeftToRight(alpha);
      resolveCollisions();
    }

    function initializeNodeDepth() {
      ky = d3.min(nodesByBreadth, function(nodes) {
        return (size[1] - (nodes.length - 1) * nodePadding) / d3.sum(nodes, value);
      });

      nodesByBreadth.forEach(function(nodes) {
        nodes.forEach(function(node, i) {
          node.y = i;
          node.dy = node.value * ky;
        });
      });

      links.forEach(function(link) {
        link.dy = link.value * ky;
      });
    }

    function relaxLeftToRight(alpha) {
      nodesByBreadth.forEach(function(nodes, breadth) {
        nodes.forEach(function(node) {
          if (node.targetLinks.length) {
            var y = d3.sum(node.targetLinks, weightedSource) / d3.sum(node.targetLinks, value);
            node.y += (y - center(node)) * alpha;
          }
        });
      });

      function weightedSource(link) {
        return center(link.source) * link.value;
      }
    }

    function relaxRightToLeft(alpha) {
      nodesByBreadth.slice().reverse().forEach(function(nodes) {
        nodes.forEach(function(node) {
          if (node.sourceLinks.length) {
            var y = d3.sum(node.sourceLinks, weightedTarget) / d3.sum(node.sourceLinks, value);
            node.y += (y - center(node)) * alpha;
          }
        });
      });

      function weightedTarget(link) {
        return center(link.target) * link.value;
      }
    }

    function resolveCollisions() {
      nodesByBreadth.forEach(function(nodes) {
        var node,
            dy,
            y0 = 0,
            n = nodes.length,
            i;

        // Push any overlapping nodes down.
        nodes.sort(ascendingDepth);
        for (i = 0; i < n; ++i) {
          node = nodes[i];
          dy = y0 - node.y;
          if (dy > 0) node.y += dy;
          y0 = node.y + node.dy + nodePadding;
        }

        // If the bottommost node goes outside the bounds, push it back up.
        dy = y0 - nodePadding - size[1];
        if (dy > 0) {
          y0 = node.y -= dy;

          // Push any overlapping nodes back up.
          for (i = n - 2; i >= 0; --i) {
            node = nodes[i];
            dy = node.y + node.dy + nodePadding - y0;
            if (dy > 0) node.y -= dy;
            y0 = node.y;
          }
        }
      });
    }
  }

  function ascendingDepth(a, b) {
    return a.y - b.y;
  }

  function computeLinkDepths() {
    nodes.forEach(function(node) {
      node.sourceLinks.sort(ascendingTargetDepth);
      node.targetLinks.sort(ascendingSourceDepth);
    });
    nodes.forEach(function(node) {
      var sy = 0, ty = 0;
      node.sourceLinks.forEach(function(link) {
        link.sy = sy;
        sy += link.dy;
      });
      node.targetLinks.forEach(function(link) {
        link.ty = ty;
        ty += link.dy;
      });
    });
  }

  function ascendingSourceDepth(a, b) {
    return a.source.y - b.source.y;
  }

  function ascendingTargetDepth(a, b) {
    return a.target.y - b.target.y;
  }

  function center(node) {
    return node.y + node.dy / 2;
  }

  function value(link) {
    return link.value;
  }

  //////////////////////////////
  // The Flow API
  ////////////////////////////

  //will modify linkDict, links, flows
  sankey.flows = function(_) {
    if (!arguments.length) return flows;
    if (!nodes.length) console.error(
      'sankey.nodes() must be called before flows(). ' +
      'Or maybe matric has no positive value');
    flows = _;
    linkDict = {};

    flows.forEach(function (f, ind) {

      //normalize nodes in f.thru
      f.thru = f.thru.map(function (n) {
        if (typeof n === "object") {
          return n;
        } else if (typeof n === "number") {
          return nodes[n];
        } else if (typeof n === "string"){
          return nodes.filter(function(node){
            return node.name === n;
          })[0];
        } else {
          console.error('not supported node type');
          return null;
        }
      });

      //build index in nodes, pointing back to f
      f.thru.forEach(function (n) {
        if (!n.flows){
          n.flows = {};
        }
        n.flows[ind] = true;
      });

      //extract links
      for (var i = 0; i < f.thru.length - 1; i++) {
        var key = stPair(f.thru[i], f.thru[i + 1]);
        if (linkDict[key]) {
          linkDict[key].value += Number(f.value);
          linkDict[key].flows.push(f);
        } else {
          linkDict[key] = {
            source: f.thru[i],
            target: f.thru[i + 1],
            value: Number(f.value),
            flows: [f],
          };
        }

      }
      
      
    
        
    });
    
   linkDict2={};
    let key2;
    
   for (key2 in linkDict) {
    linkDict2[key2] = linkDict[key2]; // copies each property to the objCopy object
  }
  
     
     
    //////// console.log(linkDict2)
     
     
    nodes.forEach(function (n) {
      var sets = n.flows;
      n.flows = [];
      for (var i in sets){
        n.flows.push(flows[i]);
      }
    });

    links = [];
    for (var key in linkDict) {
      var l = linkDict[key];
      links.push(l);
    }
    
 
    return sankey;
    
    
  };
   

      
  
  //will modify dlinks
  sankey.dflows = function(_) {
    if (!arguments.length) {
      return dflows;
    }
    dflows = _;
    dlinkDict = {};
    dflows.forEach(function (f) {
      for (var i = 0; i < f.thru.length - 1; i++) {
        var key = stPair(f.thru[i], f.thru[i + 1]);
        if (dlinkDict[key]) {
          dlinkDict[key].value += Number(f.value);
        } else {
          dlinkDict[key] = {
            source: f.thru[i],
            target: f.thru[i + 1],
            value: Number(f.value),
            sy: linkDict[key].sy,
            ty: linkDict[key].ty,

          };
        }
      }
    });
    
    

    
    dlinks = [];
    dsize = [];
    for (var key in dlinkDict) {
      var l = dlinkDict[key];
      l.dy = l.value * ky;
      dlinks.push(dlinkDict[key]);
      dsize.push({
            source: dlinkDict[key].source.disp, 
            target:  dlinkDict[key].target.disp,
        value: dlinkDict[key].value
        });
      
      
    }
    
    
    var dsize2 = JSON.parse(JSON.stringify(dsize));
 
    
 var o = []
var result = dsize.reduce(function(r, e) {
  var key = e.source;
  if (!o[key]) {
    o[key] = e;
    r.push(o[key]);
  } else {
    o[key].value += e.value;
  }
  return r;
}, []);

    
 result.map(function(item) { 
       item.machine = item.source
       item.process= item.source.substr(0,4)
   delete item.target; 
   delete item.source; 
    return item; 
});   
    
  var o2 = []
var result2 = dsize2.reduce(function(r2, e2) {
  var key2 = e2.target;
  if (!o2[key2]) {
    o2[key2] = e2;
    r2.push(o2[key2]);
  } else {
    o2[key2].value += e2.value;
  }
  return r2;
}, []);   
    
 result2.map(function(item2) { 
   item2.machine = item2.target
   item2.process= item2.target.substr(0,4)
    delete item2.source; 
   delete item2.target; 
    return item2; 
});       
    
    
    
    
function mergeDeep(o1, o2) {
    var tempNewObj = o1;

    //if o1 is an object - {}
    if (o1.length === undefined && typeof o1 !== "number") {
        $.each(o2, function(key, value) {
            if (o1[key] === undefined) {
                tempNewObj[key] = value;
            } else {
                tempNewObj[key] = mergeDeep(o1[key], o2[key]);
            }
        });
    }

    //else if o1 is an array - []
    else if (o1.length > 0 && typeof o1 !== "string") {
        $.each(o2, function(index) {
            if (JSON.stringify(o1).indexOf(JSON.stringify(o2[index])) === -1) {
                tempNewObj.push(o2[index]);
            }
        });
    }

    //handling other types like string or number
    else {
        //taking value from the second object o2
        //could be modified to keep o1 value with tempNewObj = o1;
        tempNewObj = o2;
    }
    return tempNewObj;
};
    
    
 var result3 = mergeDeep(result,result2);
    
    
    var total = Math.max.apply(Math,result3.map(function(o){return o.value;}))
    
    
var totals={};

result3.forEach(function(item){
  totals[item.process] = (totals[item.process] || 0 ) + item.value;
});

// totals now looks something like {Q3:18, Q1:16, Q4:66, Q1:12}

result3.forEach(function(item){
   item.percent = Math.round(100 * item.value / totals[item.process]);
}); 
  
    
 result3.sort(function(a, b) {
    return parseFloat(b.percent) - parseFloat(a.percent);
});   
    
    
    
    return result3
   
    
      
      
      
      
      
      
  ;
    
    this.relayout();
    return sankey;
  };

  
 
   sankey.dflows2 = function(_) {
    if (!arguments.length) {
      return dflows;
    }
    dflows = _;
     
    dlinkDict = {};
    dflows.forEach(function (f) {
      for (var i = 0; i < f.thru.length - 1; i++) {
        var key = stPair(f.thru[i], f.thru[i + 1]);
        if (dlinkDict[key]) {
          dlinkDict[key].value += Number(f.value);
        } else {
          dlinkDict[key] = {
            source: f.thru[i],
            target: f.thru[i + 1],
            value: Number(f.value),
            sy: linkDict2[key].sy,
            ty: linkDict2[key].ty,
          };
        }
      }
    });
    dlinks = [];
    for (var key in dlinkDict) {
      var l = dlinkDict[key];
      l.dy = l.value * ky;
      dlinks.push(dlinkDict[key]);
    }
     
     console.log(dlinks)
    this.relayout();
    return sankey;
  };

  sankey.dlinks = function() {
    return dlinks;
  };
  
  
  
  
  
  
  
  sankey.dlinks = function() {
    return dlinks;
  };
  
  

  
  function stPair(s, t) {
    if (typeof s === 'number') {
      return nodes[s].name + '|' + nodes[t].name ;
    } else if (typeof s === 'object') {
      return s.name + '|' + t.name;
    } else if (typeof s === 'string'){
      return s + '|' + t;
    } else {
      console.error('wrong type');
    }
  }

  //compute the starting and ending point (y) for each dynamic link
  function computeDlinks() {
    for (var k = dflows.length-1 ; k>=0; k--){
      var f = dflows[k];
      for (var i = 1; i < f.thru.length - 1; i++) {
        var center, commonBot, commonTop, ddy0, ddy1, dsy1, dty0, dy0, dy1, sy1,
          key0, key1, link0, link1, dlink0, dlink1, ty0;
        key0 = stPair(f.thru[i - 1], f.thru[i]);
        key1 = stPair(f.thru[i], f.thru[i + 1]);
        link0 = linkDict[key0];
        link1 = linkDict[key1];
        dlink0 = dlinkDict[key0];
        dlink1 = dlinkDict[key1];
        ty0 = link0.ty;
        dy0 = link0.dy;
        sy1 = link1.sy;
        dy1 = link1.dy;
        ddy0 = dlink0.dy;
        ddy1 = dlink1.dy;
        // compute the ideal position of both links on two sides
        commonTop = Math.max(ty0, sy1);
        commonBot = Math.min(ty0 + dy0, sy1 + dy1);
        center = (commonTop + commonBot) / 2;
        dty0 = center - (ddy0 / 2);
        dsy1 = center - (ddy1 / 2);
        // limit the position
        dty0 = Math.max(dty0, ty0);
        dty0 = Math.min(dty0, ty0 + dy0 - ddy0);
        dsy1 = Math.max(dsy1, sy1);
        dsy1 = Math.min(dsy1, sy1 + dy1 - ddy1);
        // set y
        dlink0.ty = dty0;
        dlink1.sy = dsy1;
        if (!dlink0.sy){
          dlink0.sy = link0.sy - (link0.ty - dlink0.ty);
        }
        dlink1.ty = link1.ty - (link1.sy - dlink1.sy);
      }
    }
  }
  return sankey;
};

showdown.min.js

/*! showdown 27-08-2015 */

(function(){function a(a){"use strict";var b={omitExtraWLInCodeBlocks:{"default":!1,describe:"Omit the default extra whiteline added to code blocks",type:"boolean"},noHeaderId:{"default":!1,describe:"Turn on/off generated header id",type:"boolean"},prefixHeaderId:{"default":!1,describe:"Specify a prefix to generated header ids",type:"string"},headerLevelStart:{"default":!1,describe:"The header blocks level start",type:"integer"},parseImgDimensions:{"default":!1,describe:"Turn on/off image dimension parsing",type:"boolean"},simplifiedAutoLink:{"default":!1,describe:"Turn on/off GFM autolink style",type:"boolean"},literalMidWordUnderscores:{"default":!1,describe:"Parse midword underscores as literal underscores",type:"boolean"},strikethrough:{"default":!1,describe:"Turn on/off strikethrough support",type:"boolean"},tables:{"default":!1,describe:"Turn on/off tables support",type:"boolean"},tablesHeaderId:{"default":!1,describe:"Add an id to table headers",type:"boolean"},ghCodeBlocks:{"default":!0,describe:"Turn on/off GFM fenced code blocks support",type:"boolean"},tasklists:{"default":!1,describe:"Turn on/off GFM tasklist support",type:"boolean"},smoothLivePreview:{"default":!1,describe:"Prevents weird effects in live previews due to incomplete input",type:"boolean"}};if(a===!1)return JSON.parse(JSON.stringify(b));var c={};for(var d in b)b.hasOwnProperty(d)&&(c[d]=b[d]["default"]);return c}function b(a,b){"use strict";var c=b?"Error in "+b+" extension->":"Error in unnamed extension",e={valid:!0,error:""};d.helper.isArray(a)||(a=[a]);for(var f=0;f<a.length;++f){var g=c+" sub-extension "+f+": ",h=a[f];if("object"!=typeof h)return e.valid=!1,e.error=g+"must be an object, but "+typeof h+" given",e;if(!d.helper.isString(h.type))return e.valid=!1,e.error=g+'property "type" must be a string, but '+typeof h.type+" given",e;var i=h.type=h.type.toLowerCase();if("language"===i&&(i=h.type="lang"),"html"===i&&(i=h.type="output"),"lang"!==i&&"output"!==i)return e.valid=!1,e.error=g+"type "+i+' is not recognized. 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It was either not found or is not a valid extension.');a=f[a]}"function"==typeof a&&(a=a()),d.helper.isArray(a)||(a=[a]);var e=b(a,c);if(!e.valid)throw Error(e.error);for(var g=0;g<a.length;++g)switch(a[g].type){case"lang":l.push(a[g]);break;case"output":m.push(a[g]);break;default:throw Error("Extension loader error: Type unrecognized!!!")}}function j(a,c){"function"==typeof a&&(a=a(new d.Converter)),d.helper.isArray(a)||(a=[a]);var e=b(a,c);if(!e.valid)throw Error(e.error);for(var f=0;f<a.length;++f)switch(a[f].type){case"lang":l.push(a[f]);break;case"output":m.push(a[f]);break;default:throw Error("Extension loader error: Type unrecognized!!!")}}var k={},l=[],m=[],n=["githubCodeBlocks","hashHTMLBlocks","stripLinkDefinitions","blockGamut","unescapeSpecialChars"];c(),this.makeHtml=function(a){if(!a)return a;var 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titanic-data.json

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