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from urllib.parse import quote, unquote | |
import logging | |
from uuid import uuid4 | |
from collections import defaultdict | |
def flatten(l): | |
for el in l: | |
if type(el) in [list, tuple]: | |
yield from flatten(el) | |
else: |
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library(tidyverse) | |
options(repr.plot.width=16, repr.plot.height=16) | |
tibble(axis_1 = c(0, 0, 1, 1), axis_2 = c(0, 1, 0, 1), | |
count = c(72164, 303490, 129222, 594717)) %>% | |
mutate(scale = 581) %>% | |
mutate(scaled_count = count/scale) %>% | |
mutate(data = purrr::map(scaled_count, ~ tibble(x=rep(1:32, 32), y=rep(1:32, each=32)) %>% head(round(.x)))) %>% | |
unnest(data) %>% |
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# based on https://github.com/vz-risk/VCDB/commits/master | |
tj <- function(ti, Pi, Pj, alpha) { | |
#xi, yi = Pi | |
#xj, yj = Pj | |
xi <- Pi[1] | |
yi <- Pi[2] | |
xj <- Pj[1] | |
yj <- Pj[2] | |
return( ( ( (xj-xi)^2 + (yj-yi)^2 )^0.5 )^alpha + ti) |
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# https://population.un.org/wpp/Download/Standard/Population/ | |
pop <- readr::read_csv("~/Documents/Data/covid19/population.csv") %>% | |
select(`Region, subregion, country or area *`, `Country code`, `2020`) %>% | |
rename(name = `Region, subregion, country or area *`, alpha_3 = `Country code`, population=`2020`) %>% | |
mutate(population = as.integer(gsub(" ", "", population))) %>% | |
mutate(population = population * 1000) %>% | |
glimpse() | |
# From https://github.com/CSSEGISandData/COVID-19 | |
covid <- readr::read_csv("~/Documents/Development/COVID-19/csse_covid_19_data/csse_covid_19_time_series/time_series_covid19_deaths_global.csv") %>% |
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enum | x | n | freq | shape1 | shape2 | x2 | y2 | |
---|---|---|---|---|---|---|---|---|
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.005 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.01 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.015 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.02 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.025 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.03 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.035 | 1 | |
Web Applications | 581 | 2013 | 0.2886 | 581.5 | 1432.5 | 0.04 | 1 |
We can make this file beautiful and searchable if this error is corrected: It looks like row 8 should actually have 15 columns, instead of 12. in line 7.
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enum,x,n,freq,method,x1,n1,shape1,shape2,mean,lower,upper,sig,y2,x2 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0.005 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0.01 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0.015 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0.02 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.4971023064317177,0.050000011597819416,1,0.025 | |
Hacking,1055,2215,0.4763,bayes,1055,2215,1055.5,1160.5,0.4763086642599278,0.45552701193652323,0.49710230643171 |
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# Copywrite Gabriel Bassett 2018 | |
# Not licensed for reuse | |
import copy | |
import operator | |
import uuid | |
import networkx as nx | |
import logging | |
import pprint | |
import simplejson as json |
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#' A function to find github issues which may have been closed w/o being added | |
#' | |
#' NOTE: Many github issues have 'na' for their issue #, leading to false positives | |
#' NOTE: Requires ghql package, currently only at https://github.com/ropensci/ghql | |
#' `devtools::install_github("ropensci/ghql")` | |
#' | |
#' @param veris a verisr dataframe | |
#' @param gh_token a github user token for api access | |
#' @return a list of github issue numbers not in veris | |
#' @export |
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{ | |
"$schema": "https://vega.github.io/schema/vega/v3.0.json", | |
"width": 500, | |
"height": 309, | |
"autosize": "pad", | |
"data": [ | |
{ | |
"name": ".", | |
"format": { | |
"type": "csv", |
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