genomics-admin

#include <Array.au3>
#include <SQLite.au3>

_SQLite_Startup() ; Load the DLL
If @error Then Exit MsgBox(0, "Error", "Unable to start SQLite, Please verify your DLL")

Local $sDatabase = @ScriptDir & '\SQLiteTestDatabase.db'
Local $hDatabase = _SQLite_Open($sDatabase) ; Create the database file and get the handle for the database

_SQLite_Exec($hDatabase, 'CREATE TABLE People (first_name, last_name);') ; CREATE a TABLE with the name "People"

genomics-admin

#!/usr/bin/env python2

"""
OpenCV example. Show webcam image and detect face.
"""

import cv2

TRAINSET = "/usr/share/OpenCV/lbpcascades/lbpcascade_frontalface.xml"
DOWNSCALE = 4

genomics-admin

import email, getpass, imaplib, os

detach_dir = '.' # directory where to save attachments (default: current)
user = raw_input("Enter your GMail username:")
pwd = getpass.getpass("Enter your password: ")

# connecting to the gmail imap server
m = imaplib.IMAP4_SSL("imap.gmail.com")
m.login(user,pwd)
m.select("cs2043") # here you a can choose a mail box like INBOX instead

genomics-admin

# Something in lines of http://stackoverflow.com/questions/348630/how-can-i-download-all-emails-with-attachments-from-gmail
# Make sure you have IMAP enabled in your gmail settings.
# Right now it won't download same file name twice even if their contents are different.

import email
import getpass, imaplib
import os
import sys

detach_dir = '.'

genomics-admin

The range sliders at the top change the values for the force-directed algorithm and the buttons load new graphs and apply various techniques. This will hopefully serve as a tool for teaching network analysis and visualization principles during my Gephi courses and general Networks in the Humanities presentations.

Notice this includes a pretty straightforward way to load CSV node and edge lists as exported from Gephi.

It also includes a pathfinding algorithm built for the standard data structure of force-directed networks in D3. This requires the addition of .id attributes for the nodes, however.

Now with Clustering Coefficients!

Also, it loads images for nodes but the images are not in the gist. The code also refers to different network types but the data files on Gist only refer to the transportation network.