genomics-geek

Source: https://confluence.rcs.griffith.edu.au/display/v20zCluster/Sun+Grid+Engine+SGE+state+letter+symbol+codes+meanings

Category	State	SGE Letter Code
Pending	pending	qw
Pending	pending, user hold	qw
Pending	pending, system hold	hqw
Pending	pending, user and system hold	hqw
Pending	pending, user hold, re-queue	hRwq
Pending	pending, system hold, re-queue	hRwq

genomics-geek

import * as React from 'react';
import * as hash from 'object-hash';
import { 
    TableProps, 
    Table,
    TableBody,
    TableCell, 
    TableFooter,
    TableHeaderCell,

genomics-geek

@namespace("com.example.avro.parquet.spark")
protocol HTTP {
  record Header {
    string name;
    string value;
  }

  record Request {
    string method;
    string path;

genomics-geek

Subcommander

Managment commands are assumed to be unique across all apps in a Django project. This can lead to long or obscure command names in attempt to namespace those commands.

Subcommander acts as a proxy command giving the real commands a namespace. The subcommander module can be named after the app name or some derivation. The structure looks as follows:

myapp/
    management/
        commands/

genomics-geek

; Configuration for Airflow webserver and scheduler in Supervisor

[program:airflow]
command=/bin/airflow webserver
stopsignal=QUIT
stopasgroup=true
user=airflow
stdout_logfile=/var/log/airflow/airflow-stdout.log
stderr_logfile=/var/log/airflow/airflow-stderr.log
environment=HOME="/home/airflow",AIRFLOW_HOME="/etc/airflow",TMPDIR="/storage/airflow_tmp"

genomics-geek

#
# Slightly tighter CORS config for nginx
#
# A modification of https://gist.github.com/1064640/ to include a white-list of URLs
#
# Despite the W3C guidance suggesting that a list of origins can be passed as part of
# Access-Control-Allow-Origin headers, several browsers (well, at least Firefox) 
# don't seem to play nicely with this.
#

genomics-geek

I just had to set up Jenkins to use GitHub. My notes (to myself, mostly):

Detailed Instructions

For setting up Jenkins to build GitHub projects. This assumes some ability to manage Jenkins, use the command line, set up a utility LDAP account, etc. Please share or improve this Gist as needed.

Install Jenkins Plugins

• get both the git and github plugin
• http://wiki.jenkins-ci.org/display/JENKINS/Git+Plugin

genomics-geek

Jenkins CI on OSX

Instructions on how to setup a secured Jenkins CI on a Mac.

Download & Install dependencies

All of these operations are done with your admin user.

Developer tools

Install the command line developer tools.

genomics-geek

Step One: Update Packages

sudo apt-get update
sudo apt-get upgrade

Step Two: Install and Create Virtualenv

sudo apt-get install python-virtualenv
sudo virtualenv /opt/myenv

genomics-geek

******************************************************************** Set up Django, Nginx and Gunicorn in a Virtualenv controled by Supervisor********************************************************************

Steps with explanations to set up a server using:

• Virtualenv
• Virtualenvwrapper
• Django
• Gunicorn