Gerdus van Zyl gerdus
gerdus
/ gist:5553616
Last active
December 17, 2015 04:49
PyPy optimized version for http://saml.rilspace.org/gc-content-continued-python-vs-d-vs-c-vs-free-pascal
optimizations: reading file in binary mode and readlines with size hint
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| import timeit | |
| tfunc = timeit.default_timer | |
| def main(): | |
| file = open("Homo_sapiens.GRCh37.61.dna_rm.chromosome.Y.fa","rb") | |
| gcCount = 0 | |
| totalBaseCount = 0 | |
| while 1: | |
| lines = file.readlines(10000) | |
| if not lines: |