R jupyter to pdf failure

output

$ jupyter nbconvert --to pdf --template r.tplx hh_data.ipynb 
[NbConvertApp] WARNING | Collisions detected in jupyter_nbconvert_config.py and jupyter_nbconvert_config.json config files. jupyter_nbconvert_config.json has higher priority: {
  "Exporter": {
    "template_path": "['.', '/home/gidden/.local/share/jupyter/templates'] ignored, using [u'/home/gidden/.local/share/jupyter/templates']"
  }
}
[NbConvertApp] Converting notebook kevin_hh_data.ipynb to pdf
[NbConvertApp] Writing 20356 bytes to notebook.tex
[NbConvertApp] Building PDF
[NbConvertApp] Running pdflatex 3 times: [u'pdflatex', u'notebook.tex']
[NbConvertApp] CRITICAL | pdflatex failed: [u'pdflatex', u'notebook.tex']
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian)
 restricted \write18 enabled.
entering extended mode
(./notebook.tex
LaTeX2e <2011/06/27>
Babel <3.9h> and hyphenation patterns for 78 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
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(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
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(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/graphics.cfg)
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For additional information on amsmath, use the `?' option.
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Package hyperref Message: Driver (autodetected): hpdftex.

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No file notebook.aux.
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
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*geometry* driver: auto-detecting
*geometry* detected driver: pdftex

Package geometry Warning: The marginal notes overrun the paper.
     Add 3.73001pt and more to the right margin.

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* (1in=72.27pt=25.4mm, 1cm=28.453pt)

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(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)

LaTeX Warning: No \author given.

! Missing $ inserted.
<inserted text> 
                $
l.281 ...SCRIPTION & URL & ISO3 & PERIOD & SURVEY_
                                                  NAME\\
? 
! Emergency stop.
<inserted text> 
                $
l.281 ...SCRIPTION & URL & ISO3 & PERIOD & SURVEY_
                                                  NAME\\
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on notebook.log.

[NbConvertApp] Running bibtex 1 time: [u'bibtex', u'notebook']
[NbConvertApp] WARNING | bibtex had problems, most likely because there were no citations
[NbConvertApp] Running pdflatex 3 times: [u'pdflatex', u'notebook.tex']
[NbConvertApp] CRITICAL | pdflatex failed: [u'pdflatex', u'notebook.tex']
This is pdfTeX, Version 3.1415926-2.5-1.40.14 (TeX Live 2013/Debian)
 restricted \write18 enabled.
entering extended mode
(./notebook.tex
LaTeX2e <2011/06/27>
Babel <3.9h> and hyphenation patterns for 78 languages loaded.
(/usr/share/texlive/texmf-dist/tex/latex/base/article.cls
Document Class: article 2007/10/19 v1.4h Standard LaTeX document class
(/usr/share/texlive/texmf-dist/tex/latex/base/size10.clo))
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty
(/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty)
(/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty
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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ltxcmds.sty))))
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(/usr/share/texlive/texmf-dist/tex/generic/xkeyval/xkeyval.tex))
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(/usr/share/texlive/texmf-dist/tex/latex/adjustbox/tc-pdftex.def))
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(/usr/share/texlive/texmf-dist/tex/generic/ifxetex/ifxetex.sty))
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For additional information on amsmath, use the `?' option.
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(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsgen.sty))
(/usr/share/texlive/texmf-dist/tex/latex/amsmath/amsbsy.sty)
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(/usr/share/texlive/texmf-dist/tex/latex/ucs/utf8x.def))
(/usr/share/texlive/texmf-dist/tex/latex/fancyvrb/fancyvrb.sty
Style option: `fancyvrb' v2.7a, with DG/SPQR fixes, and firstline=lastline fix 
<2008/02/07> (tvz))
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grffile.sty
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(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/ifluatex.sty))))
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Package hyperref Message: Driver (autodetected): hpdftex.

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(/home/gidden/etc/latex/enumitem.sty) (./notebook.aux)
(/usr/share/texlive/texmf-dist/tex/context/base/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
) (/usr/share/texlive/texmf-dist/tex/latex/oberdiek/epstopdf-base.sty
(/usr/share/texlive/texmf-dist/tex/latex/oberdiek/grfext.sty)
(/usr/share/texlive/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg))
*geometry* driver: auto-detecting
*geometry* detected driver: pdftex

Package geometry Warning: The marginal notes overrun the paper.
     Add 3.73001pt and more to the right margin.

*geometry* verbose mode - [ preamble ] result:
* driver: pdftex
* paper: <default>
* layout: <same size as paper>
* layoutoffset:(h,v)=(0.0pt,0.0pt)
* modes: 
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* v-part:(T,H,B)=(72.26999pt, 650.43001pt, 72.26999pt)
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* \hoffset=0.0pt
* \voffset=0.0pt
* \mag=1000
* \@twocolumnfalse
* \@twosidefalse
* \@mparswitchfalse
* \@reversemarginfalse
* (1in=72.27pt=25.4mm, 1cm=28.453pt)

(/usr/share/texlive/texmf-dist/tex/latex/ucs/ucsencs.def)
(/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty
(/usr/share/texlive/texmf-dist/tex/generic/oberdiek/gettitlestring.sty))
(./notebook.out) (./notebook.out)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsa.fd)
(/usr/share/texlive/texmf-dist/tex/latex/amsfonts/umsb.fd)

LaTeX Warning: No \author given.

! Missing $ inserted.
<inserted text> 
                $
l.281 ...SCRIPTION & URL & ISO3 & PERIOD & SURVEY_
                                                  NAME\\
? 
! Emergency stop.
<inserted text> 
                $
l.281 ...SCRIPTION & URL & ISO3 & PERIOD & SURVEY_
                                                  NAME\\
!  ==> Fatal error occurred, no output PDF file produced!
Transcript written on notebook.log.

Traceback (most recent call last):
  File "/home/gidden/.local/bin/jupyter-nbconvert", line 11, in <module>
    sys.exit(main())
  File "/home/gidden/.local/lib/python2.7/site-packages/jupyter_core/application.py", line 267, in launch_instance
    return super(JupyterApp, cls).launch_instance(argv=argv, **kwargs)
  File "/home/gidden/.local/lib/python2.7/site-packages/traitlets/config/application.py", line 592, in launch_instance
    app.start()
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/nbconvertapp.py", line 289, in start
    self.convert_notebooks()
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/nbconvertapp.py", line 412, in convert_notebooks
    self.convert_single_notebook(notebook_filename)
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/nbconvertapp.py", line 383, in convert_single_notebook
    output, resources = self.export_single_notebook(notebook_filename, resources)
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/nbconvertapp.py", line 335, in export_single_notebook
    output, resources = self.exporter.from_filename(notebook_filename, resources=resources)
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/exporters/exporter.py", line 165, in from_filename
    return self.from_notebook_node(nbformat.read(f, as_version=4), resources=resources, **kw)
  File "/home/gidden/.local/lib/python2.7/site-packages/nbconvert/exporters/pdf.py", line 152, in from_notebook_node
    raise IOError("PDF creating failed")
IOError: PDF creating failed