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Example of Crossref metadata of a withdrawn bioRxiv article
$ curl -s -L -H "Accept: application/vnd.crossref.unixref+xml" "https://doi.org/10.1101/2020.01.30.927871"
<?xml version="1.0" encoding="UTF-8"?>
<doi_records>
<doi_record owner="10.1101" timestamp="2020-06-02 10:44:42">
<crossref>
<posted_content type="preprint" language="en" metadata_distribution_opts="any">
<group_title>Evolutionary Biology</group_title>
<contributors>
<person_name contributor_role="author" sequence="first">
<given_name>Prashant</given_name>
<surname>Pradhan</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Ashutosh Kumar</given_name>
<surname>Pandey</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Akhilesh</given_name>
<surname>Mishra</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Parul</given_name>
<surname>Gupta</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Praveen Kumar</given_name>
<surname>Tripathi</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Manoj Balakrishnan</given_name>
<surname>Menon</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>James</given_name>
<surname>Gomes</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Perumal</given_name>
<surname>Vivekanandan</surname>
</person_name>
<person_name contributor_role="author" sequence="additional">
<given_name>Bishwajit</given_name>
<surname>Kundu</surname>
</person_name>
</contributors>
<titles>
<title>Uncanny similarity of unique inserts in the 2019-nCoV spike protein to HIV-1 gp120 and Gag</title>
</titles>
<posted_date>
<month>01</month>
<day>31</day>
<year>2020</year>
</posted_date>
<acceptance_date>
<month>01</month>
<day>31</day>
<year>2020</year>
</acceptance_date>
<institution>
<institution_name>bioRxiv</institution_name>
</institution>
<item_number item_number_type="pisa">biorxiv;2020.01.30.927871v1</item_number>
<abstract>
<title>Abstract</title>
<p>We are currently witnessing a major epidemic caused by the 2019 novel coronavirus (2019-nCoV). The evolution of 2019-nCoV remains elusive. We found 4 insertions in the spike glycoprotein (S) which are unique to the 2019-nCoV and are not present in other coronaviruses. Importantly, amino acid residues in all the 4 inserts have identity or similarity to those in the HIV-1 gp120 or HIV-1 Gag. Interestingly, despite the inserts being discontinuous on the primary amino acid sequence, 3D-modelling of the 2019-nCoV suggests that they converge to constitute the receptor binding site. The finding of 4 unique inserts in the 2019-nCoV, all of which have identity /similarity to amino acid residues in key structural proteins of HIV-1 is unlikely to be fortuitous in nature. This work provides yet unknown insights on 2019-nCoV and sheds light on the evolution and pathogenicity of this virus with important implications for diagnosis of this virus.</p>
</abstract>
<doi_data>
<doi>10.1101/2020.01.30.927871</doi>
<timestamp>2020060207442749000</timestamp>
<resource>http://biorxiv.org/lookup/doi/10.1101/2020.01.30.927871</resource>
<collection property="crawler-based">
<item crawler="iParadigms">
<resource>https://syndication.highwire.org/content/doi/10.1101/2020.01.30.927871</resource>
</item>
</collection>
</doi_data>
<citation_list>
<citation key="2020060207442749000_2020.01.30.927871v1.1">
<journal_title>Nature Structural and Molecular Biology</journal_title>
<volume>13</volume>
<issue>8</issue>
<first_page>751</first_page>
<cYear>2006</cYear>
<doi provider="crossref">10.1038/nsmb1123</doi>
<article_title>Architecture of the SARS coronavirus prefusion spike</article_title>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.2">
<doi provider="crossref">10.1093/nar/gku340</doi>
<unstructured_citation>Biasini, M. , Bienert, S. , Waterhouse, A. , Arnold, K. , Studer, G. , Schmidt, T. , Kiefer, F. , Cassarino, T. G. , Bertoni, M. , Bordoli, L. , &amp; Schwede, T. (2014). SWISS-MODEL: Modelling protein tertiary and quaternary structure using evolutionary information. Nucleic Acids Research. https://doi.org/10.1093/nar/gku340</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.3">
<doi>10.1128/JVI.77.16.8801-8811.2003</doi>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.4">
<journal_title>Emerging Microbes &amp; Infections</journal_title>
<volume>9</volume>
<issue>1</issue>
<first_page>221</first_page>
<cYear>2020</cYear>
<doi provider="crossref">10.1080/22221751.2020.1719902</doi>
<article_title>Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan</article_title>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.5">
<doi provider="crossref">10.1128/CMR.00102-14</doi>
<unstructured_citation>Chan, J. F. W. , Lau, S. K. P. , To, K. K. W. , Cheng, V. C. C. , Woo, P. C. Y. , &amp; Yuen, K.-Y. (2015). Middle East Respiratory Syndrome Coronavirus: Another Zoonotic Betacoronavirus Causing SARS-Like Disease. https://doi.org/10.1128/CMR.00102-14</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.6">
<doi provider="crossref">10.1016/j.tim.2013.05.005</doi>
<unstructured_citation>Chan, J. , To, K. , Tse, H. , Jin, D. , microbiology, K. Y.-T. in, &amp; 2013, undefined. (n.d.). Interspecies transmission and emergence of novel viruses: lessons from bats and birds. Elsevier.</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.7">
<doi provider="crossref">10.1093/nar/16.22.10881</doi>
<unstructured_citation>Corpet, F. (1988). Multiple sequence alignment with hierarchical clustering. Nucleic Acids Research. https://doi.org/10.1093/nar/16.22.10881</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.8">
<doi provider="crossref">10.1038/hr.2014.17</doi>
<unstructured_citation>DeLano, W. L. (2002). The PyMOL Molecular Graphics System, Version 1.1. Schr{ö}dinger LLC. https://doi.org/10.1038/hr.2014.17</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.9">
<doi>10.1128/JVI.01048-13</doi>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.10">
<doi provider="crossref">10.1093/nar/gkh340</doi>
<unstructured_citation>Edgar, R. C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research. https://doi.org/10.1093/nar/gkh340</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.11">
<doi provider="crossref">10.1002/gch2.1018</doi>
<unstructured_citation>Elbe, S. , &amp; Buckland-Merrett, G. (2017). Data, disease and diplomacy: GISAID’s innovative contribution to global health. Global Challenges. https://doi.org/10.1002/gch2.1018</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.12">
<doi provider="crossref">10.1038/nature17200</doi>
<unstructured_citation>Kirchdoerfer, R. N. , Cottrell, C. A. , Wang, N. , Pallesen, J. , Yassine, H. M. , Turner, H. L. , Corbett, K. S. , Graham, B. S. , McLellan, J. S. , &amp; Ward, A. B. (2016). Pre-fusion structure of a human coronavirus spike protein. Nature. https://doi.org/10.1038/nature17200</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.13">
<doi provider="crossref">10.1093/molbev/msy096</doi>
<unstructured_citation>Kumar, S. , Stecher, G. , Li, M. , Knyaz, C. , &amp; Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution. https://doi.org/10.1093/molbev/msy096</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.14">
<journal_title>Annual Review of Virology</journal_title>
<volume>3</volume>
<issue>1</issue>
<first_page>237</first_page>
<cYear>2016</cYear>
<doi provider="crossref">10.1146/annurev-virology-110615-042301</doi>
<article_title>Structure, Function, and Evolution of Coronavirus Spike Proteins</article_title>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.15">
<doi>10.1111/j.1348-0421.2008.00008.x</doi>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.16">
<doi provider="crossref">10.1038/ncomms15216</doi>
<unstructured_citation>Ou, X. , Guan, H. , Qin, B. , Mu, Z. , Wojdyla, J. A. , Wang, M. , Dominguez, S. R. , Qian, Z. , &amp; Cui, S. (2017). Crystal structure of the receptor binding domain of the spike glycoprotein of human betacoronavirus HKU1. Nature Communications. https://doi.org/10.1038/ncomms15216</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.17">
<doi>10.1128/JVI.02501-05</doi>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.18">
<doi provider="crossref">10.1101/2020.01.22.914952</doi>
<unstructured_citation>Zhou, P. , Yang, X.-L. , Wang, X.-G. , Hu, B. , Zhang, L. , Zhang, W. , Si, H.-R. , Zhu, Y. , Li, B. , Huang, C.-L. , Chen, H.-D. , Chen, J. , Luo, Y. , Guo, H. , Jiang, R.-D. , Liu, M.-Q. , Chen, Y. , Shen, X.-R. , Wang, X. , … Shi, Z.-L. (2020). Discovery of a novel coronavirus associated with the recent pneumonia outbreak in humans and its potential bat origin. BioRxiv. https://doi.org/10.1101/2020.01.22.914952</unstructured_citation>
</citation>
<citation key="2020060207442749000_2020.01.30.927871v1.19">
<doi provider="crossref">10.1056/NEJMoa2001017</doi>
<unstructured_citation>Zhu, N. , Zhang, D. , Wang, W. , Li, X. , Yang, B. , Song, J. , Zhao, X. , Huang, B. , Shi, W. , Lu, R. , Niu, P. , Zhan, F. , Ma, X. , Wang, D. , Xu, W. , Wu, G. , Gao, G. F. , &amp; Tan, W. (2020). A Novel Coronavirus from Patients with Pneumonia in China, 2019. New England Journal of Medicine, NEJMoa2001017. https://doi.org/10.1056/NEJMoa2001017</unstructured_citation>
</citation>
</citation_list>
</posted_content>
</crossref>
</doi_record>
</doi_records>
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