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hdf5 install error homebrew mpich
////////////////////////////////////////////////////////////////////////////////
01.configure:
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... bin/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... i386-apple-darwin12.3.0
checking host system type... i386-apple-darwin12.3.0
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config i386-apple-darwin12.3.0... no
checking for config i386-apple-darwin12.3.0... no
checking for config apple-darwin12.3.0... no
checking for config apple-darwin12.3.0... no
checking for config i386-darwin12.3.0... no
checking for config i386-darwin12.3.0... no
checking for config i386-apple... no
checking for config darwin12.3.0... no
checking for config darwin12.3.0... no
checking for config apple... found
No match to get fc_version_info and flags for mpif90
No match to get cxx_version_info for c++
checking for config ./config/site-specific/host-mbgnzl... no
checking for gcc... mpicc
checking whether the C compiler works... no
configure: error: in `/private/tmp/hdf5-xZq6/hdf5-1.8.11':
configure: error: C compiler cannot create executables
See `config.log' for more details
HOMEBREW_VERSION: 0.9.4
HEAD: b2aa02ab907902920927f8ae06a0524cf8828088
CPU: quad-core 64-bit ivybridge
OS X: 10.8.3-x86_64
Xcode: 4.6.2
CLT: 4.6.0.0.1.1365549073
X11: 2.7.4 => /opt/X11
////////////////////////////////////////////////////////////////////////////////
config.log
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by HDF5 configure 1.8.11, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/usr/local/Cellar/hdf5/1.8.11 --enable-production --enable-debug=no --disable-dependency-tracking --with-zlib=/usr --with-szlib=/usr/local --enable-filters=all --enable-static=yes --enable-shared=yes --enable-parallel
## --------- ##
## Platform. ##
## --------- ##
hostname = mbgnzl
uname -m = x86_64
uname -r = 12.3.0
uname -s = Darwin
uname -v = Darwin Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64
/usr/bin/uname -p = i386
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64
Kernel configured for up to 4 processors.
2 processors are physically available.
4 processors are logically available.
Processor type: i486 (Intel 80486)
Processors active: 0 1 2 3
Primary memory available: 8.00 gigabytes
Default processor set: 148 tasks, 684 threads, 4 processors
Load average: 1.59, Mach factor: 2.40
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/Library/ENV/4.3
PATH: /usr/local/opt/python/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:3254: checking for a BSD-compatible install
configure:3322: result: /usr/bin/install -c
configure:3333: checking whether build environment is sane
configure:3388: result: yes
configure:3539: checking for a thread-safe mkdir -p
configure:3578: result: bin/install-sh -c -d
configure:3585: checking for gawk
configure:3615: result: no
configure:3585: checking for mawk
configure:3615: result: no
configure:3585: checking for nawk
configure:3615: result: no
configure:3585: checking for awk
configure:3601: found /usr/bin/awk
configure:3612: result: awk
configure:3623: checking whether make sets $(MAKE)
configure:3645: result: yes
configure:3742: checking whether make supports nested variables
configure:3759: result: yes
configure:3782: checking whether to enable maintainer-specific portions of Makefiles
configure:3791: result: no
configure:3835: checking build system type
configure:3849: result: i386-apple-darwin12.3.0
configure:3869: checking host system type
configure:3882: result: i386-apple-darwin12.3.0
configure:3956: checking shell variables initial values
ACLOCAL='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run aclocal-1.12'
ACLOCAL_PATH=/usr/local/share/aclocal
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=
AM_CPPFLAGS=
AM_CXXFLAGS=
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY=0
AM_FCFLAGS=
AM_LDFLAGS=
AM_V='$(V)'
ARCHFLAGS='-arch x86_64'
AUTOCONF='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run autoconf'
AUTOHEADER='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run autoheader'
AUTOMAKE='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run automake-1.12'
AWK=awk
Apple_PubSub_Socket_Render=/tmp/launch-ukUV4V/Render
Apple_Ubiquity_Message=/tmp/launch-wDnbPv/Apple_Ubiquity_Message
BASH=/bin/sh
BASH_ARGC=([0]="10")
BASH_ARGV=([0]="--enable-parallel" [1]="--enable-shared=yes" [2]="--enable-static=yes" [3]="--enable-filters=all" [4]="--with-szlib=/usr/local" [5]="--with-zlib=/usr" [6]="--disable-dependency-tracking" [7]="--enable-debug=no" [8]="--enable-production" [9]="--prefix=/usr/local/Cellar/hdf5/1.8.11")
BASH_LINENO=([0]="0")
BASH_SOURCE=([0]="./configure")
BASH_VERSINFO=([0]="3" [1]="2" [2]="48" [3]="1" [4]="release" [5]="x86_64-apple-darwin12")
BASH_VERSION='3.2.48(1)-release'
CC=mpicc
CFLAGS=
CLICOLOR=1
CMAKE_INCLUDE_PATH=/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers/
CMAKE_LIBRARY_PATH=/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
CMAKE_OSX_SYSROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.8.sdk/
CMAKE_PREFIX_PATH=/usr/local
COMMAND_MODE=unix2003
CPPFLAGS=
CXX=c++
CXXFLAGS=
CYGPATH_W=echo
DEFAULT_LIBS=
DEVELOPER_DIR=/Applications/Xcode.app/Contents/Developer
DIRSTACK=()
DISPLAY=/tmp/launch-rY497M/org.macosforge.xquartz:0
DUALCASE=1
ECHO_C='\c'
ECHO_N=
ECHO_T=
EDITOR='/Applications/Emacs.app/Contents/MacOS/Emacs -nw'
EUID=501
FC=mpif90
FCFLAGS=
GROUPS=()
HOME=/Users/gnzlbg
HOMEBREW_BREW_FILE=/usr/local/bin/brew
HOMEBREW_CC=clang
HOMEBREW_CCCFG=sa
HOMEBREW_ERROR_PIPE=7
HOSTNAME=mbgnzl
HOSTTYPE=x86_64
IFS='
'
INSTALL='/usr/bin/install -c'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LANG=en_US.UTF-8
LANGUAGE=C
LC_ALL=C
LDFLAGS=
LIBOBJS=
LINENO=3956
LOGNAME=gnzlbg
LSCOLORS=gxBxhxDxfxhxhxhxhxcxcx
MACHTYPE=x86_64-apple-darwin12
MACOSX_DEPLOYMENT_TARGET=10.8
MAINT='#'
MAINTAINER_MODE_FALSE=
MAINTAINER_MODE_TRUE='#'
MAKEFLAGS=
MAKEINFO='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run makeinfo'
MFLAGS=
MISSING='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing'
MKDIR_P='bin/install-sh -c -d'
OBJC=cc
OBJCXX=c++
OPTERR=1
OPTIND=1
OSTYPE=darwin12
PACKAGE=hdf5
PACKAGE_BUGREPORT=help@hdfgroup.org
PACKAGE_NAME=HDF5
PACKAGE_STRING='HDF5 1.8.11'
PACKAGE_TARNAME=hdf5
PACKAGE_URL=
PACKAGE_VERSION=1.8.11
PATH=/usr/local/Library/ENV/4.3:/usr/local/opt/python/bin:/usr/bin:/bin:/usr/sbin:/sbin
PATH_SEPARATOR=:
PIPESTATUS=([0]="0")
PKG_CONFIG_LIBDIR=/usr/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.8
POOL=/Users/gnzlbg/pool
POSIXLY_CORRECT=y
PPID=12718
PS1='$ '
PS2='> '
PS4='+ '
PWD=/private/tmp/hdf5-xZq6/hdf5-1.8.11
SCRATCH=/aia/r020.2/scratch/gonzalo
SCRIPTS=/Users/gnzlbg/projects/scripts
SET_MAKE=
SHELL=/bin/sh
SHELLOPTS=braceexpand:hashall:interactive-comments:posix
SHLVL=2
SRC=/Users/gnzlbg/src
SSH_AUTH_SOCK=/tmp/launch-EyZmuY/Listeners
TERM=xterm-256color
TERM_PROGRAM=Apple_Terminal
TERM_PROGRAM_VERSION=309
TERM_SESSION_ID=53CC5AB4-334F-4E44-8D32-B095170F07A3
TESTPOOL=/Users/gnzlbg/test_pool
TMPDIR=/var/folders/mm/y444qqwd0kn52fycyz6nsph40000gn/T/
UID=501
USER=gnzlbg
USE_MAINTAINER_MODE=no
VERSION=1.8.11
ZFS_HOSTCONFIG_FILE=/Users/gnzlbg/projects/PhD/ZFS/HostConfigs/clang
ZFS_TESTCASES_HOSTCONFIG_FILE=/Users/gnzlbg/projects/PhD/ZFS/HostConfigs/tclang
_='checking shell variables initial values... '
__CF_USER_TEXT_ENCODING=0x1F5:0:0
ac_abs_confdir=/private/tmp/hdf5-xZq6/hdf5-1.8.11
ac_arg=CXX=c++
ac_aux_dir=bin
ac_build_alias=i386-apple-darwin12.3.0
ac_cache_corrupted=false
ac_clean_files=
ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
ac_compiler_gnu=
ac_confdir=.
ac_config_commands=' pubconf'
ac_config_guess='/bin/sh bin/config.guess'
ac_config_headers=' src/H5config.h'
ac_config_libobj_dir=.
ac_config_sub='/bin/sh bin/config.sub'
ac_configure='/bin/sh bin/configure'
ac_configure_args=' '\''--prefix=/usr/local/Cellar/hdf5/1.8.11'\'' '\''--enable-production'\'' '\''--enable-debug=no'\'' '\''--disable-dependency-tracking'\'' '\''--with-zlib=/usr'\'' '\''--with-szlib=/usr/local'\'' '\''--enable-filters=all'\'' '\''--enable-static=yes'\'' '\''--enable-shared=yes'\'' '\''--enable-parallel'\'' '\''CC=mpicc'\'' '\''FC=mpif90'\'' '\''CXX=c++'\'''
ac_cpp='$CPP $CPPFLAGS'
ac_cv_build=i386-apple-darwin12.3.0
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=c++
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=mpif90
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=i386-apple-darwin12.3.0
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_make_make_set=yes
ac_dashdash=
ac_default_prefix=/private/tmp/hdf5-xZq6/hdf5-1.8.11/hdf5
ac_dir=bin
ac_env_CCC_set=
ac_env_CCC_value=
ac_env_CC_set=set
ac_env_CC_value=mpicc
ac_env_CFLAGS_set=
ac_env_CFLAGS_value=
ac_env_CPPFLAGS_set=
ac_env_CPPFLAGS_value=
ac_env_CPP_set=
ac_env_CPP_value=
ac_env_CXXCPP_set=
ac_env_CXXCPP_value=
ac_env_CXXFLAGS_set=
ac_env_CXXFLAGS_value=
ac_env_CXX_set=set
ac_env_CXX_value=c++
ac_env_FCFLAGS_set=
ac_env_FCFLAGS_value=
ac_env_FC_set=set
ac_env_FC_value=mpif90
ac_env_LDFLAGS_set=
ac_env_LDFLAGS_value=
ac_env_LIBS_set=
ac_env_LIBS_value=
ac_env_build_alias_set=
ac_env_build_alias_value=
ac_env_host_alias_set=
ac_env_host_alias_value=
ac_env_target_alias_set=
ac_env_target_alias_value=
ac_exec_ext=
ac_ext=c
ac_hostname=mbgnzl
ac_includes_default='#include <stdio.h>
#ifdef HAVE_SYS_TYPES_H
# include <sys/types.h>
#endif
#ifdef HAVE_SYS_STAT_H
# include <sys/stat.h>
#endif
#ifdef STDC_HEADERS
# include <stdlib.h>
# include <stddef.h>
#else
# ifdef HAVE_STDLIB_H
# include <stdlib.h>
# endif
#endif
#ifdef HAVE_STRING_H
# if !defined STDC_HEADERS && defined HAVE_MEMORY_H
# include <memory.h>
# endif
# include <string.h>
#endif
#ifdef HAVE_STRINGS_H
# include <strings.h>
#endif
#ifdef HAVE_INTTYPES_H
# include <inttypes.h>
#endif
#ifdef HAVE_STDINT_H
# include <stdint.h>
#endif
#ifdef HAVE_UNISTD_H
# include <unistd.h>
#endif'
ac_init_help=
ac_init_version=false
ac_install_sh='bin/install-sh -c'
ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
ac_ls_di='13672612 .'
ac_make=make
ac_msg='sources are in ., but `cd .'\'' does not work'
ac_must_keep_next=false
ac_new_set=
ac_new_val=
ac_old_set=
ac_old_val=
ac_optarg=yes
ac_option=--enable-parallel
ac_pass=2
ac_precious_vars='build_alias
host_alias
target_alias
CC
CFLAGS
LDFLAGS
LIBS
CPPFLAGS
FC
FCFLAGS
CXX
CXXFLAGS
CCC
CXXCPP
CPP'
ac_prev=
ac_prog=awk
ac_pwd=/private/tmp/hdf5-xZq6/hdf5-1.8.11
ac_pwd_ls_di='13672612 .'
ac_save_IFS='
'
ac_script='s/[\\$]/&&/g;s/;s,x,x,$//'
ac_signal=0
ac_site_file=/usr/local/Cellar/hdf5/1.8.11/etc/config.site
ac_site_file1=/usr/local/Cellar/hdf5/1.8.11/share/config.site
ac_site_file2=/usr/local/Cellar/hdf5/1.8.11/etc/config.site
ac_srcdir_defaulted=yes
ac_subst_files=
ac_subst_vars='am__EXEEXT_FALSE
am__EXEEXT_TRUE
LTLIBOBJS
LIBOBJS
HAVE_SHARED_CONDITIONAL_FALSE
HAVE_SHARED_CONDITIONAL_TRUE
SETX
SEARCH
BUILD_HDF5_HL_CONDITIONAL_FALSE
BUILD_HDF5_HL_CONDITIONAL_TRUE
BUILD_FORTRAN_CONDITIONAL_FALSE
BUILD_FORTRAN_CONDITIONAL_TRUE
BUILD_PARALLEL_CONDITIONAL_FALSE
BUILD_PARALLEL_CONDITIONAL_TRUE
BUILD_CXX_CONDITIONAL_FALSE
BUILD_CXX_CONDITIONAL_TRUE
STRICT_FORMAT_CHECKS
DEFAULT_API_VERSION
DEPRECATED_SYMBOLS
BUILD_ALL_CONDITIONAL_FALSE
BUILD_ALL_CONDITIONAL_TRUE
HL_FOR
HL
DYNAMIC_DIRS
ROOT
CXX_VERSION
FC_VERSION
CC_VERSION
WORDS_BIGENDIAN
BYTESEX
CONFIG_MODE
CONFIG_USER
CONFIG_DATE
H5_VERSION
DIRECT_VFD_CONDITIONAL_FALSE
DIRECT_VFD_CONDITIONAL_TRUE
USE_FILTER_SCALEOFFSET
USE_FILTER_NBIT
USE_FILTER_FLETCHER32
USE_FILTER_SHUFFLE
FILTERS
MPI_GET_SIZE
ADD_PARALLEL_FILES
USINGMEMCHECKER
CLEARFILEBUF
INSTRUMENT_LIBRARY
TRACE_API
DEBUG_PKG
H5_LONE_COLON
HAVE_PTHREAD
BUILD_SHARED_SZIP_CONDITIONAL_FALSE
BUILD_SHARED_SZIP_CONDITIONAL_TRUE
LL_PATH
USE_FILTER_SZIP
USE_FILTER_DEFLATE
AM_MAKEFLAGS
LT_STATIC_EXEC
CPP
OTOOL64
OTOOL
LIPO
NMEDIT
DSYMUTIL
MANIFEST_TOOL
RANLIB
ac_ct_AR
LN_S
NM
ac_ct_DUMPBIN
DUMPBIN
LD
FGREP
EGREP
GREP
SED
LIBTOOL
OBJDUMP
DLLTOOL
AS
CXX_SHARED_CONDITIONAL_FALSE
CXX_SHARED_CONDITIONAL_TRUE
H5_CXX_SHARED
FORTRAN_SHARED_CONDITIONAL_FALSE
FORTRAN_SHARED_CONDITIONAL_TRUE
H5_FORTRAN_SHARED
TESTPARALLEL
RUNPARALLEL
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PARALLEL
TIME
TR
AR
PERL
CXXCPP
am__fastdepCXX_FALSE
am__fastdepCXX_TRUE
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ac_ct_CXX
CXXFLAGS
FORTRAN_DEFAULT_REALisDBLE_F_FALSE
FORTRAN_DEFAULT_REALisDBLE_F_TRUE
FORTRAN_2003_CONDITIONAL_F_FALSE
FORTRAN_2003_CONDITIONAL_F_TRUE
FORTRAN_HAVE_SIZEOF_FALSE
FORTRAN_HAVE_SIZEOF_TRUE
FCLIBS
F9XMODEXT
F9XMODFLAG
FSEARCH_DIRS
F9XSUFFIXFLAG
FCFLAGS_f90
ac_ct_FC
FCFLAGS
OBJECT_NAMELEN_DEFAULT_F
SIZE_T
HID_T
HSSIZE_T
HSIZE_T
HADDR_T
R_INTEGER
R_LARGE
HAVE_FORTRAN_2003
HDF5_INTERFACES
am__fastdepCC_FALSE
am__fastdepCC_TRUE
CCDEPMODE
am__nodep
AMDEPBACKSLASH
AMDEP_FALSE
AMDEP_TRUE
am__quote
am__include
DEPDIR
OBJEXT
EXEEXT
ac_ct_CC
LDFLAGS
CFLAGS
CC
UNAME_INFO
enable_static
enable_shared
STATIC_SHARED
THREADSAFE
DIRECT_VFD
HAVE_DMALLOC
CODESTACK
INSTRUMENT
LARGEFILE
GPFS
HDF5_HL
CXX
HDF_CXX
FC2003
FC
HDF_FORTRAN2003
HDF_FORTRAN
STATIC_EXEC
MPE
EXTERNAL_FILTERS
AM_LDFLAGS
AM_CPPFLAGS
AM_CXXFLAGS
AM_FCFLAGS
AM_CFLAGS
H5_LDFLAGS
H5_CXXFLAGS
H5_FCFLAGS
H5_CPPFLAGS
H5_CFLAGS
CPPFLAGS
host_os
host_vendor
host_cpu
host
build_os
build_vendor
build_cpu
build
MAINT
MAINTAINER_MODE_FALSE
MAINTAINER_MODE_TRUE
AM_BACKSLASH
AM_DEFAULT_VERBOSITY
AM_DEFAULT_V
AM_V
am__untar
am__tar
AMTAR
am__leading_dot
SET_MAKE
AWK
mkdir_p
MKDIR_P
INSTALL_STRIP_PROGRAM
STRIP
install_sh
MAKEINFO
AUTOHEADER
AUTOMAKE
AUTOCONF
ACLOCAL
VERSION
PACKAGE
CYGPATH_W
am__isrc
INSTALL_DATA
INSTALL_SCRIPT
INSTALL_PROGRAM
target_alias
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build_alias
LIBS
ECHO_T
ECHO_N
ECHO_C
DEFS
mandir
localedir
libdir
psdir
pdfdir
dvidir
htmldir
infodir
docdir
oldincludedir
includedir
localstatedir
sharedstatedir
sysconfdir
datadir
datarootdir
libexecdir
sbindir
bindir
program_transform_name
prefix
exec_prefix
PACKAGE_URL
PACKAGE_BUGREPORT
PACKAGE_STRING
PACKAGE_VERSION
PACKAGE_TARNAME
PACKAGE_NAME
PATH_SEPARATOR
SHELL'
ac_tool_prefix=
ac_unique_file=src/H5.c
ac_unrecognized_opts=
ac_unrecognized_sep=
ac_user_opts='
enable_option_checking
enable_silent_rules
enable_maintainer_mode
enable_dependency_tracking
enable_unsupported
enable_fortran
enable_fortran2003
enable_cxx
enable_shared
enable_static
with_pic
enable_fast_install
with_gnu_ld
with_sysroot
enable_libtool_lock
enable_static_exec
enable_sharedlib_rpath
enable_production
enable_largefile
enable_linux_lfs
with_fnord
with_dmalloc
with_zlib
with_szlib
with_pthread
enable_threadsafe
enable_gpfs
enable_debug
enable_codestack
enable_metadata_trace_file
enable_trace
enable_instrument
enable_clear_file_buffers
enable_using_memchecker
enable_parallel
with_mpe
enable_mpi_size
enable_filters
with_default_vfd
enable_direct_vfd
enable_dconv_exception
enable_dconv_accuracy
enable_hl
enable_build_all
enable_deprecated_symbols
with_default_api_version
enable_strict_format_checks
enable_embedded_libinfo
'
ac_useropt=parallel
ac_useropt_orig=parallel
ac_val='${datarootdir}/man'
ac_var=CPP
ac_word=awk
am__api_version=1.12
am__leading_dot=.
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
am_aux_dir=/private/tmp/hdf5-xZq6/hdf5-1.8.11/bin
am_cv_make_support_nested_variables=yes
am_lf='
'
am_make=make
am_missing_run='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run '
am_sleep_pid=12887
as_basename=basename
as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
emulate sh
NULLCMD=:
# Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
# is contrary to our usage. Disable this feature.
alias -g '\''${1+"$@"}'\''='\''"$@"'\''
setopt NO_GLOB_SUBST
else
case `(set -o) 2>/dev/null` in #(
*posix*) :
set -o posix ;; #(
*) :
;;
esac
fi
'
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as_cr_digits=0123456789
as_cr_letters=abcdefghijklmnopqrstuvwxyz
as_dir=/usr/bin
as_dirname=dirname
as_echo='printf %s\n'
as_echo_n='printf %s'
as_executable_p=as_fn_executable_p
as_expr=expr
as_have_required=yes
as_lineno_1=477
as_lineno_1a=477
as_lineno_2=478
as_lineno_2a=478
as_ln_s='ln -s'
as_me=configure
as_mkdir_p='mkdir -p "$as_dir"'
as_myself=./configure
as_nl='
'
as_required='as_fn_return () { (exit $1); }
as_fn_success () { as_fn_return 0; }
as_fn_failure () { as_fn_return 1; }
as_fn_ret_success () { return 0; }
as_fn_ret_failure () { return 1; }
exitcode=0
as_fn_success || { exitcode=1; echo as_fn_success failed.; }
as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
if ( set x; as_fn_ret_success y && test x = "$1" ); then :
else
exitcode=1; echo positional parameters were not saved.
fi
test x$exitcode = x0 || exit 1
test -x / || exit 1'
as_save_IFS='
'
as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO
as_lineno_2=199 as_lineno_2a=$LINENO
eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" &&
test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1
test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || (
ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\''
ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO
ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO
PATH=/empty FPATH=/empty; export PATH FPATH
test "X`printf %s $ECHO`" = "X$ECHO" \
|| test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1
test $(( 1 + 1 )) = 2 || exit 1'
as_test_x='test -x'
as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\'''
as_unset=as_fn_unset
as_var=MAILPATH
bindir='${exec_prefix}/bin'
build=i386-apple-darwin12.3.0
build_cpu=i386
build_os=darwin12.3.0
build_vendor=apple
cache_file=/dev/null
cross_compiling=no
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_debug=no
enable_dependency_tracking=no
enable_filters=all
enable_parallel=yes
enable_production=yes
enable_shared=yes
enable_static=yes
exec_prefix=NONE
host=i386-apple-darwin12.3.0
host_cpu=i386
host_os=darwin12.3.0
host_vendor=apple
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
no_create=
no_recursion=
oldincludedir=/usr/include
pdfdir='${docdir}'
prefix=/usr/local/Cellar/hdf5/1.8.11
program_prefix=NONE
program_suffix=NONE
program_transform_name=s,x,x,
psdir='${docdir}'
saved_user_CFLAGS=
saved_user_CPPFLAGS=
saved_user_CXXFLAGS=
saved_user_FCFLAGS=
saved_user_LDFLAGS=
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
silent=
site=
srcdir=.
subdirs=
sysconfdir='${prefix}/etc'
target=
verbose=
with_szlib=/usr/local
with_zlib=/usr
x_includes=NONE
x_libraries=NONE
configure:3959: result: done
configure:4018: checking if basename works
configure:4024: result: yes
configure:4028: checking if xargs works
configure:4034: result: yes
configure:4042: checking for cached host
configure:4049: result: none
configure:4115: checking for config i386-apple-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config i386-apple-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config apple-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config apple-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config i386-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config i386-darwin12.3.0
configure:4123: result: no
configure:4115: checking for config i386-apple
configure:4123: result: no
configure:4115: checking for config darwin12.3.0
configure:4123: result: no
configure:4115: checking for config darwin12.3.0
configure:4123: result: no
configure:4115: checking for config apple
configure:4119: result: found
configure:4135: checking for config ./config/site-specific/host-mbgnzl
configure:4143: result: no
configure:4220: checking for gcc
configure:4247: result: mpicc
configure:4476: checking for C compiler version
configure:4485: mpicc --version >&5
./configure: line 4487: mpicc: command not found
configure:4496: $? = 127
configure:4485: mpicc -v >&5
./configure: line 4487: mpicc: command not found
configure:4496: $? = 127
configure:4485: mpicc -V >&5
./configure: line 4487: mpicc: command not found
configure:4496: $? = 127
configure:4485: mpicc -qversion >&5
./configure: line 4487: mpicc: command not found
configure:4496: $? = 127
configure:4516: checking whether the C compiler works
configure:4538: mpicc conftest.c >&5
./configure: line 4540: mpicc: command not found
configure:4542: $? = 127
configure:4580: result: no
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "HDF5"
| #define PACKAGE_TARNAME "hdf5"
| #define PACKAGE_VERSION "1.8.11"
| #define PACKAGE_STRING "HDF5 1.8.11"
| #define PACKAGE_BUGREPORT "help@hdfgroup.org"
| #define PACKAGE_URL ""
| #define PACKAGE "hdf5"
| #define VERSION "1.8.11"
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:4585: error: in `/private/tmp/hdf5-xZq6/hdf5-1.8.11':
configure:4587: error: C compiler cannot create executables
See `config.log' for more details
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i386-apple-darwin12.3.0
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=set
ac_cv_env_CXX_value=c++
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=set
ac_cv_env_FC_value=mpif90
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=i386-apple-darwin12.3.0
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_ac_ct_CC=mpicc
ac_cv_prog_make_make_set=yes
am_cv_make_support_nested_variables=yes
hdf5_cv_host=i386-apple-darwin12.3.0
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run aclocal-1.12'
ADD_PARALLEL_FILES=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_CFLAGS=''
AM_CPPFLAGS=''
AM_CXXFLAGS=''
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='0'
AM_FCFLAGS=''
AM_LDFLAGS=''
AM_MAKEFLAGS=''
AM_V='$(V)'
AR=''
AS=''
AUTOCONF='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run autoconf'
AUTOHEADER='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run autoheader'
AUTOMAKE='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run automake-1.12'
AWK='awk'
BUILD_ALL_CONDITIONAL_FALSE=''
BUILD_ALL_CONDITIONAL_TRUE=''
BUILD_CXX_CONDITIONAL_FALSE=''
BUILD_CXX_CONDITIONAL_TRUE=''
BUILD_FORTRAN_CONDITIONAL_FALSE=''
BUILD_FORTRAN_CONDITIONAL_TRUE=''
BUILD_HDF5_HL_CONDITIONAL_FALSE=''
BUILD_HDF5_HL_CONDITIONAL_TRUE=''
BUILD_PARALLEL_CONDITIONAL_FALSE=''
BUILD_PARALLEL_CONDITIONAL_TRUE=''
BUILD_SHARED_SZIP_CONDITIONAL_FALSE=''
BUILD_SHARED_SZIP_CONDITIONAL_TRUE=''
BYTESEX=''
CC='mpicc'
CCDEPMODE=''
CC_VERSION=''
CFLAGS=' '
CLEARFILEBUF=''
CODESTACK='no'
CONFIG_DATE=''
CONFIG_MODE=''
CONFIG_USER=''
CPP=''
CPPFLAGS=' '
CXX='c++'
CXXCPP=''
CXXDEPMODE=''
CXXFLAGS=' '
CXX_SHARED_CONDITIONAL_FALSE=''
CXX_SHARED_CONDITIONAL_TRUE=''
CXX_VERSION=''
CYGPATH_W='echo'
DEBUG_PKG=''
DEFAULT_API_VERSION=''
DEFS=''
DEPDIR=''
DEPRECATED_SYMBOLS=''
DIRECT_VFD='no'
DIRECT_VFD_CONDITIONAL_FALSE=''
DIRECT_VFD_CONDITIONAL_TRUE=''
DLLTOOL=''
DSYMUTIL=''
DUMPBIN=''
DYNAMIC_DIRS=''
ECHO_C='\c'
ECHO_N=''
ECHO_T=''
EGREP=''
EXEEXT=''
EXTERNAL_FILTERS=''
F9XMODEXT=''
F9XMODFLAG=''
F9XSUFFIXFLAG=''
FC2003=''
FC='mpif90'
FCFLAGS=' '
FCFLAGS_f90=''
FCLIBS=''
FC_VERSION=''
FGREP=''
FILTERS=''
FORTRAN_2003_CONDITIONAL_F_FALSE=''
FORTRAN_2003_CONDITIONAL_F_TRUE=''
FORTRAN_DEFAULT_REALisDBLE_F_FALSE=''
FORTRAN_DEFAULT_REALisDBLE_F_TRUE=''
FORTRAN_HAVE_SIZEOF_FALSE=''
FORTRAN_HAVE_SIZEOF_TRUE=''
FORTRAN_SHARED_CONDITIONAL_FALSE=''
FORTRAN_SHARED_CONDITIONAL_TRUE=''
FSEARCH_DIRS=''
GPFS='no'
GREP=''
H5_CFLAGS=''
H5_CPPFLAGS=''
H5_CXXFLAGS=''
H5_CXX_SHARED=''
H5_FCFLAGS=''
H5_FORTRAN_SHARED=''
H5_LDFLAGS=''
H5_LONE_COLON=''
H5_VERSION=''
HADDR_T=''
HAVE_DMALLOC='no'
HAVE_FORTRAN_2003=''
HAVE_PTHREAD=''
HAVE_SHARED_CONDITIONAL_FALSE=''
HAVE_SHARED_CONDITIONAL_TRUE=''
HDF5_HL='yes'
HDF5_INTERFACES=''
HDF_CXX='no'
HDF_FORTRAN2003='no'
HDF_FORTRAN='no'
HID_T=''
HL=''
HL_FOR=''
HSIZE_T=''
HSSIZE_T=''
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTRUMENT=''
INSTRUMENT_LIBRARY=''
LARGEFILE='yes'
LD=''
LDFLAGS=' '
LIBOBJS=''
LIBS=''
LIBTOOL=''
LIPO=''
LL_PATH=''
LN_S=''
LTLIBOBJS=''
LT_STATIC_EXEC=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/missing --run makeinfo'
MANIFEST_TOOL=''
MKDIR_P='bin/install-sh -c -d'
MPE='no'
MPI_GET_SIZE=''
NM=''
NMEDIT=''
OBJDUMP=''
OBJECT_NAMELEN_DEFAULT_F=''
OBJEXT=''
OTOOL64=''
OTOOL=''
PACKAGE='hdf5'
PACKAGE_BUGREPORT='help@hdfgroup.org'
PACKAGE_NAME='HDF5'
PACKAGE_STRING='HDF5 1.8.11'
PACKAGE_TARNAME='hdf5'
PACKAGE_URL=''
PACKAGE_VERSION='1.8.11'
PARALLEL=''
PATH_SEPARATOR=':'
PERL=''
RANLIB=''
ROOT=''
RUNPARALLEL=''
RUNSERIAL=''
R_INTEGER=''
R_LARGE=''
SEARCH=''
SED=''
SETX=''
SET_MAKE=''
SHELL='/bin/sh'
SIZE_T=''
STATIC_EXEC='no'
STATIC_SHARED=''
STRICT_FORMAT_CHECKS=''
STRIP=''
TESTPARALLEL=''
THREADSAFE='no'
TIME=''
TR=''
TRACE_API=''
UNAME_INFO='Darwin mbgnzl 12.3.0 Darwin Kernel Version 12.3.0: Sun Jan 6 22:37:10 PST 2013; root:xnu-2050.22.13~1/RELEASE_X86_64 x86_64'
USE_FILTER_DEFLATE=''
USE_FILTER_FLETCHER32=''
USE_FILTER_NBIT=''
USE_FILTER_SCALEOFFSET=''
USE_FILTER_SHUFFLE=''
USE_FILTER_SZIP=''
USINGMEMCHECKER=''
VERSION='1.8.11'
WORDS_BIGENDIAN=''
ac_ct_AR=''
ac_ct_CC='mpicc'
ac_ct_CXX=''
ac_ct_DUMPBIN=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE=''
am__include=''
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='i386-apple-darwin12.3.0'
build_alias=''
build_cpu='i386'
build_os='darwin12.3.0'
build_vendor='apple'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enable_shared='yes'
enable_static='yes'
exec_prefix='NONE'
host='i386-apple-darwin12.3.0'
host_alias=''
host_cpu='i386'
host_os='darwin12.3.0'
host_vendor='apple'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /private/tmp/hdf5-xZq6/hdf5-1.8.11/bin/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr/local/Cellar/hdf5/1.8.11'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "HDF5"
#define PACKAGE_TARNAME "hdf5"
#define PACKAGE_VERSION "1.8.11"
#define PACKAGE_STRING "HDF5 1.8.11"
#define PACKAGE_BUGREPORT "help@hdfgroup.org"
#define PACKAGE_URL ""
#define PACKAGE "hdf5"
#define VERSION "1.8.11"
configure: exit 77
////////////////////////////////////////////////////////////////////////////////
doctor:
Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected dylibs:
/usr/local/lib/libmacfuse_i32.2.dylib
/usr/local/lib/libmacfuse_i64.2.dylib
/usr/local/lib/libosxfuse_i32.2.dylib
/usr/local/lib/libosxfuse_i64.2.dylib
Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected .la files:
/usr/local/lib/libosxfuse_i32.la
/usr/local/lib/libosxfuse_i64.la
Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected .pc files:
/usr/local/lib/pkgconfig/osxfuse.pc
Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
gfortran
hdf5
Warning: Some installed formula are missing dependencies.
You should `brew install` the missing dependencies:
brew install fuse4x-kext
Run `brew missing` for more details.
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