Gökçen Eraslan gokceneraslan

## heartcellatlas_scanpy.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / heartcellatlas_scanpy.ipynb
            
            
              Created
              September 30, 2020 01:33
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## Untitled-2.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / Untitled-2.ipynb
            
            
              Created
              July 4, 2020 18:36
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## Untitled.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / Untitled.ipynb
            
            
              Created
              July 4, 2020 18:15
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## dirichlet_test.csv

          
            m1
            m2
            m3
            chem
            dis

            
              0.2
              0.2
              0.6
              v2
              l

            
              0.2857142857142857
              0.2857142857142857
              0.42857142857142855
              v2
              l

            
              0.0
              1.0
              0.0
              v2
              nl

            
              0.0
              1.0
              0.0
              v2
              nl

            
              0.37894736842105264
              0.12631578947368421
              0.49473684210526314
              v3
              l

            
              0.2054794520547945
              0.0958904109589041
              0.6986301369863014
              v3
              nl

            
              0.16483516483516483
              0.24175824175824176
              0.5934065934065934
              v3
              l

            
              0.12195121951219512
              0.1951219512195122
              0.6829268292682927
              v3
              nl

            
              0.07975460122699386
              0.10429447852760736
              0.8159509202453987
              v3
              h

## allen-cortex-preprocessing.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / allen-cortex-preprocessing.ipynb
            
            
              Last active
              June 4, 2020 23:15
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## GTEx-expression-info.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / GTEx-expression-info.ipynb
            
            
              Created
              April 12, 2020 22:22
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## ot-d2g.py
import gzip, json
from pandas.io.json import json_normalize

filename = '19.11_association_data.json.gz'
jlist = json_normalize([json.loads(x) for x in gzip.open(filename, 'rt').read().splitlines()])
jlist.to_pickle('19.11_association_data.pkl')

## singler.py
import scanpy as sc

# numpy et al.
import numpy as np
import scipy.sparse as sp
import pandas as pd
import gc

# R integration
from rpy2.robjects.packages import importr

## Untitled1.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / Untitled1.ipynb
            
            
              Last active
              December 3, 2019 01:52
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
      
    
## Untitled21.ipynb

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              0 stars
            
          
                gokceneraslan
                / Untitled21.ipynb
            
            
              Last active
              November 24, 2019 20:35
            
          
        Loading

      Sorry, something went wrong. Reload?
      Sorry, we cannot display this file.
      Sorry, this file is invalid so it cannot be displayed.
      
          Viewer requires iframe.
m1	m2	m3	chem	dis
0.2	0.2	0.6	v2	l
0.2857142857142857	0.2857142857142857	0.42857142857142855	v2	l
0.0	1.0	0.0	v2	nl
0.0	1.0	0.0	v2	nl
0.37894736842105264	0.12631578947368421	0.49473684210526314	v3	l
0.2054794520547945	0.0958904109589041	0.6986301369863014	v3	nl
0.16483516483516483	0.24175824175824176	0.5934065934065934	v3	l
0.12195121951219512	0.1951219512195122	0.6829268292682927	v3	nl
0.07975460122699386	0.10429447852760736	0.8159509202453987	v3	h
	import gzip, json
	from pandas.io.json import json_normalize

	filename = '19.11_association_data.json.gz'
	jlist = json_normalize([json.loads(x) for x in gzip.open(filename, 'rt').read().splitlines()])
	jlist.to_pickle('19.11_association_data.pkl')
	import scanpy as sc

	# numpy et al.
	import numpy as np
	import scipy.sparse as sp
	import pandas as pd
	import gc

	# R integration
	from rpy2.robjects.packages import importr