Praneeth gp201

## README.md

      
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              February 21, 2025 09:29
            
              
                Command line tool to convert annotated phylogenetic trees nextstrain.org's JSON format to a tidy data frame of tree attributes
              
          
    Convert Auspice tree JSON to a data frame and Newick tree

An example script to convert an Auspice tree JSON to a data frame and Newick tree for processing by downstream analyses.
Setup

Install Nextstrain.
Usage


## nbmerge.py
#!/usr/bin/env python
# Note, updated version of
# https://github.com/ipython/ipython-in-depth/blob/master/tools/nbmerge.py
"""
usage:

python nbmerge.py A.ipynb B.ipynb C.ipynb > merged.ipynb
"""

import io
	#!/usr/bin/env python
	# Note, updated version of
	# https://github.com/ipython/ipython-in-depth/blob/master/tools/nbmerge.py
	"""
	usage:

	python nbmerge.py A.ipynb B.ipynb C.ipynb > merged.ipynb
	"""

	import io