Skip to content

Instantly share code, notes, and snippets.

@gpratt
Created April 29, 2014 18:51
Show Gist options
  • Save gpratt/11408742 to your computer and use it in GitHub Desktop.
Save gpratt/11408742 to your computer and use it in GitHub Desktop.
rbpdb access
cisbp_db = pd.read_csv("/nas3/gpratt/projects/cisbp/analysis/RBP_Information.txt", sep="\t")
pwm_locations = "/nas3/gpratt/projects/cisbp/analysis/pwm_locations/"
#where %s is the motif id found in cisbp_db
motif_ids = "%s.txt/fimo_reformated.txt"
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment