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gpratt/count_to_rpkm_function.py

Created April 24, 2015 20:53
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count_to_rpkm_function
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count_to_rpkm_function.py
def counts_to_rpkm(featureCountsTable):
counts = featureCountsTable.ix[:,5:]
lengths = featureCountsTable['Length']
mapped_reads = counts.sum()
return (counts * pow(10,9)).div(mapped_reads, axis=1).div(lengths, axis=0)
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