vagrant provisioning file to set a lucid64 box up to be able to build the RDKit java wrappers.

bootstrap.sh

#!/usr/bin/env bash

apt-get update
apt-get install -y python-software-properties software-properties-common 
apt-get install -y build-essential gcc-4.1 g++-4.1 sqlite3 openjdk-6-jdk openjdk-6-jre libpcre3 libpcre3-dev
add-apt-repository ppa:git-core/ppa
apt-get update
apt-get install -y git-core
if [ \! -e /usr/bin/cmake ]
then   
  cd /tmp
  if [ \! -e /tmp/cmake-3.3.2-Linux-x86_64.tar.gz ]
  then
    wget -nv --no-check-certificate https://cmake.org/files/v3.3/cmake-3.3.2-Linux-x86_64.tar.gz
  fi
  tar xzf /tmp/cmake-3.3.2-Linux-x86_64.tar.gz
  cp cmake-3.3.2-Linux-x86_64/bin/* /usr/bin
  cp -r cmake-3.3.2-Linux-x86_64/share/* /usr/share
fi
   
if [ \! -e /usr/local/bin/swig ]
then
  cd /tmp
  if [ \! -e /tmp/swig-3.0.7.tar.gz ]
  then
    wget -nv --no-check-certificate https://sourceforge.net/projects/swig/files/swig/swig-3.0.7/swig-3.0.7.tar.gz
  fi
  tar xzf /tmp/swig-3.0.7.tar.gz
  cd swig-3.0.7
  ./configure
  make -j2 && make -j2 install
fi


if [ \! -e /usr/local/lib/libboost_serialization.a ]
then
  cd /tmp
  if [ \! -e /tmp/boost_1_48_0.tar.gz ]
  then
    wget -nv --no-check-certificate http://sourceforge.net/projects/boost/files/boost/1.48.0/boost_1_48_0.tar.gz
  fi
  tar xzf /tmp/boost_1_48_0.tar.gz
  cd boost_1_48_0
  CXX=/usr/bin/g++-4.1 CC=/usr/bin/gcc-4.1 CFLAGS="-fPIC" CXXFLAGS="-fPIC" ./bootstrap.sh --with-libraries=thread,system,regex,serialization
  ./b2 toolset=gcc-4.1 cxxflags="-fPIC"
  ./b2 toolset=gcc-4.1 cxxflags="-fPIC" install
fi