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grimbough/Biomart_Query2.R

Created November 6, 2017 09:57
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Biomart_Query2.R
fullXmlQuery <- "<?xml version='1.0' encoding='UTF-8'?> <!DOCTYPE Query>
<Query virtualSchemaName = 'default' uniqueRows = '1' count = '0' datasetConfigVersion = '0.6' header='1' requestid= 'biomaRt'>
<Dataset name = 'hsapiens_gene_ensembl'>
<Attribute name = 'phenotype_description'/>
<Attribute name = 'ensembl_gene_id'/>
<Filter name = 'ensembl_gene_id' value = 'ENSG00000094804'/>
</Dataset>
</Query>"
rcurl_return <- RCurl::postForm(uri = "http://www.ensembl.org:80/biomart/martservice?",
"query" = fullXmlQuery)
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