EasyBuild binutils

eb_log.txt

== 2018-01-26 11:11:43,530 easyblock.py:264 INFO This is EasyBuild 3.5.1 (framework: 3.5.1, easyblocks: 3.5.1) on host eldorado.
== 2018-01-26 11:11:43,530 easyblock.py:270 INFO This is easyblock EB_binutils from module easybuild.easyblocks.binutils (/storage/apps/easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/easybuild_easyblocks-3.5.1-py2.7.egg/easybuild/easyblocks/b/binutils.pyo)
== 2018-01-26 11:11:43,531 easyblock.py:815 INFO Build dir set to /storage/apps/easybuild/build/binutils/2.29/GCCcore-system
== 2018-01-26 11:11:43,531 easyblock.py:856 INFO Software install dir set to /storage/apps/easybuild/software/binutils/2.29-GCCcore-system
== 2018-01-26 11:11:43,532 easyblock.py:861 INFO Module install dir set to /storage/apps/easybuild/modules/all
== 2018-01-26 11:11:43,532 easyblock.py:249 INFO Init completed for application name binutils version 2.29
== 2018-01-26 11:11:43,532 easyblock.py:2659 INFO Obtained application instance of for binutils (easyblock: None)
== 2018-01-26 11:11:43,533 build_log.py:233 INFO building and installing binutils/2.29-GCCcore-system...
== 2018-01-26 11:11:43,533 build_log.py:233 INFO fetching files...
== 2018-01-26 11:11:43,533 easyblock.py:2446 INFO Starting fetch step
== 2018-01-26 11:11:43,534 easyblock.py:2452 INFO Running method fetch_step part of step fetch
== 2018-01-26 11:11:43,534 easyblock.py:1557 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2018-01-26 11:11:43,535 filetools.py:343 INFO Command eb found at /storage/apps/easybuild/software/EasyBuild/3.5.1/bin/eb
== 2018-01-26 11:11:43,536 easyblock.py:646 INFO Found file binutils-2.29.tar.gz at /storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz
== 2018-01-26 11:11:43,537 easyblock.py:374 INFO Added sources: [{'path': '/storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz', 'cmd': None, 'finalpath': '/storage/apps/easybuild/build/binutils/2.29/GCCcore-system', 'name': 'binutils-2.29.tar.gz', 'checksum': '172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4'}]
== 2018-01-26 11:11:43,537 easyblock.py:1598 INFO no patches provided
== 2018-01-26 11:11:43,604 easyblock.py:1608 INFO md5 checksum for /storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz: 77a8b99de0481589a871062702df4e59
== 2018-01-26 11:11:43,699 easyblock.py:1608 INFO sha256 checksum for /storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz: 172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4
== 2018-01-26 11:11:43,699 easyblock.py:1641 INFO Checking dirs that need to be created: ['/storage/apps/easybuild/software/binutils/2.29-GCCcore-system', '/storage/apps/easybuild/modules/all/binutils', '/storage/apps/easybuild/modules/tools/binutils']
== 2018-01-26 11:11:43,700 build_log.py:233 INFO creating build dir, resetting environment...
== 2018-01-26 11:11:43,700 easyblock.py:2446 INFO Starting ready step
== 2018-01-26 11:11:43,700 easyblock.py:2452 INFO Running method check_readiness_step part of step ready
== 2018-01-26 11:11:43,700 run.py:183 INFO running cmd: ulimit -u 
== 2018-01-26 11:11:43,706 easyblock.py:1505 INFO Setting parallelism: 32
== 2018-01-26 11:11:43,743 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2018-01-26 11:11:43,743 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:43,743 easyblock.py:1510 WARNING Loaded modules detected: ['EasyBuild/3.5.1']
== 2018-01-26 11:11:43,777 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2018-01-26 11:11:43,777 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:43,779 easyblock.py:2452 INFO Running method make_builddir part of step ready
== 2018-01-26 11:11:43,779 easyblock.py:881 INFO Found old directory /storage/apps/easybuild/build/binutils/2.29/GCCcore-system
== 2018-01-26 11:11:43,879 filetools.py:1203 INFO Path /storage/apps/easybuild/build/binutils/2.29/GCCcore-system successfully removed.
== 2018-01-26 11:11:43,879 easyblock.py:888 INFO Removed old directory /storage/apps/easybuild/build/binutils/2.29/GCCcore-system
== 2018-01-26 11:11:43,879 filetools.py:1107 INFO Creating directory /storage/apps/easybuild/build/binutils/2.29/GCCcore-system (parents: True, set_gid: False, sticky: False)
== 2018-01-26 11:11:43,879 easyblock.py:2452 INFO Running method env_reset_changes part of step ready
== 2018-01-26 11:11:43,879 easyblock.py:2452 INFO Running method handle_iterate_opts part of step ready
== 2018-01-26 11:11:43,879 build_log.py:233 INFO unpacking...
== 2018-01-26 11:11:43,880 easyblock.py:2446 INFO Starting source step
== 2018-01-26 11:11:43,880 easyblock.py:2452 INFO Running method checksum_step part of step source
== 2018-01-26 11:11:43,975 easyblock.py:1655 INFO Checksum verification for /storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz using 172e8c89472cf52712fd23a9f14e9bca6182727fb45b0f8f482652a83d5a11b4 passed.
== 2018-01-26 11:11:43,975 easyblock.py:2452 INFO Running method extract_step part of step source
== 2018-01-26 11:11:43,975 easyblock.py:1666 INFO Unpacking source binutils-2.29.tar.gz
== 2018-01-26 11:11:43,976 run.py:183 INFO running cmd: tar xzf /storage/apps/easybuild/sources/b/binutils/binutils-2.29.tar.gz 
== 2018-01-26 11:11:45,326 build_log.py:233 INFO patching...
== 2018-01-26 11:11:45,326 easyblock.py:2446 INFO Starting patch step
== 2018-01-26 11:11:45,327 easyblock.py:2452 INFO Running method patch_step part of step patch
== 2018-01-26 11:11:45,327 build_log.py:233 INFO preparing...
== 2018-01-26 11:11:45,327 easyblock.py:2446 INFO Starting prepare step
== 2018-01-26 11:11:45,327 easyblock.py:2452 INFO Running method prepare_step part of step prepare
== 2018-01-26 11:11:45,405 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2018-01-26 11:11:45,405 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,440 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2018-01-26 11:11:45,441 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,474 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2018-01-26 11:11:45,474 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,513 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib (previous value: '/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib')
== 2018-01-26 11:11:45,513 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,554 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib:/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib (previous value: '/storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib')
== 2018-01-26 11:11:45,555 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,598 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/lib:/storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib:/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib (previous value: '/storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/lib')
== 2018-01-26 11:11:45,598 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2018-01-26 11:11:45,600 toolchain.py:616 INFO List of toolchain dependency modules and toolchain definition match!
== 2018-01-26 11:11:45,602 options.py:90 WARNING option: option with name _opt_CC returns None
== 2018-01-26 11:11:45,603 options.py:90 WARNING option: option with name _opt_CXX returns None
== 2018-01-26 11:11:45,603 options.py:90 WARNING option: option with name _opt_F77 returns None
== 2018-01-26 11:11:45,603 options.py:90 WARNING option: option with name _opt_F90 returns None
== 2018-01-26 11:11:45,603 options.py:90 WARNING option: option with name _opt_FC returns None
== 2018-01-26 11:11:45,605 compiler.py:321 INFO _set_optimal_architecture: using march=native as optarch for x86_64.
== 2018-01-26 11:11:45,608 variables.py:201 WARNING flags_for_subdirs: directory /storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib64 was not found
== 2018-01-26 11:11:45,608 variables.py:201 WARNING flags_for_subdirs: directory /storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/include was not found
== 2018-01-26 11:11:45,608 variables.py:201 WARNING flags_for_subdirs: directory /storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib64 was not found
== 2018-01-26 11:11:45,608 variables.py:201 WARNING flags_for_subdirs: directory /storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/lib64 was not found
== 2018-01-26 11:11:45,609 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2018-01-26 11:11:45,609 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable CPPFLAGS set to -I/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/include -I/storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/include (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/include -I/storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/include (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,610 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2018-01-26 11:11:45,611 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable LDFLAGS set to -L/usr/lib64 -L/usr/lib -L/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib -L/storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib -L/storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/lib (previously undefined)
== 2018-01-26 11:11:45,612 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/usr/lib64 -L/usr/lib -L/storage/apps/easybuild/software/flex/2.6.4-GCCcore-system/lib -L/storage/apps/easybuild/software/Bison/3.0.4-GCCcore-system/lib -L/storage/apps/easybuild/software/zlib/1.2.11-GCCcore-system/lib (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable PRECFLAGS set to  (previously undefined)
== 2018-01-26 11:11:45,613 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to  (previously undefined)
== 2018-01-26 11:11:45,613 easyblock.py:1430 INFO Using /storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/ as start dir
== 2018-01-26 11:11:45,614 build_log.py:233 INFO configuring...
== 2018-01-26 11:11:45,614 easyblock.py:2446 INFO Starting configure step
== 2018-01-26 11:11:45,614 easyblock.py:2452 INFO Running method configure_step part of step configure
== 2018-01-26 11:11:45,703 run.py:183 INFO running cmd:  env LIBS=''  ./configure --prefix=/storage/apps/easybuild/software/binutils/2.29-GCCcore-system  --with-system-zlib  --with-sysroot=/  --enable-shared --enable-static  --enable-gold --enable-plugins --enable-ld=default  
== 2018-01-26 11:11:47,817 run.py:486 INFO cmd " env LIBS=''  ./configure --prefix=/storage/apps/easybuild/software/binutils/2.29-GCCcore-system  --with-system-zlib  --with-sysroot=/  --enable-shared --enable-static  --enable-gold --enable-plugins --enable-ld=default " exited with exit code 0 and output:
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether ln works... yes
checking whether ln -s works... yes
checking for a sed that does not truncate output... /usr/bin/sed
checking for gawk... gawk
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... no
checking whether g++ accepts -g... no
checking whether g++ accepts -static-libstdc++ -static-libgcc... no
checking for gnatbind... no
checking for gnatmake... no
checking whether compiler driver understands Ada... no
checking how to compare bootstrapped objects... cmp --ignore-initial=16 $$f1 $$f2
checking for objdir... .libs
checking for isl 0.16, 0.15, or deprecated 0.14... no
recommended isl version is 0.16 or 0.15, the minimum required isl version 0.14 is deprecated
checking for isl 0.16 or 0.15... no
*** This configuration is not supported in the following subdirectories:
     zlib
    (Any other directories should still work fine.)
checking for default BUILD_CONFIG... 
checking for --enable-vtable-verify... no
checking for bison... bison -y
checking for bison... bison
checking for gm4... no
checking for gnum4... no
checking for m4... m4
checking for flex... flex
checking for flex... flex
checking for makeinfo... no
/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/missing: line 81: makeinfo: command not found
checking for expect... no
checking for runtest... no
checking for ar... ar
checking for as... as
checking for dlltool... no
checking for ld... ld
checking for lipo... no
checking for nm... nm
checking for ranlib... ranlib
checking for strip... strip
checking for windres... no
checking for windmc... no
checking for objcopy... objcopy
checking for objdump... objdump
checking for readelf... readelf
checking for cc... cc
checking for c++... no
checking for g++... no
checking for cxx... no
checking for gxx... no
checking for gcc... gcc
checking for gfortran... no
checking for gccgo... no
checking for ar... ar
checking for as... as
checking for dlltool... no
checking for ld... ld
checking for lipo... no
checking for nm... nm
checking for objcopy... objcopy
checking for objdump... objdump
checking for ranlib... ranlib
checking for readelf... readelf
checking for strip... strip
checking for windres... no
checking for windmc... no
checking where to find the target ar... just compiled
checking where to find the target as... just compiled
checking where to find the target cc... host tool
checking where to find the target c++... host tool
checking where to find the target c++ for libstdc++... host tool
checking where to find the target dlltool... just compiled
checking where to find the target gcc... host tool
checking where to find the target gfortran... host tool
checking where to find the target gccgo... host tool
checking where to find the target ld... just compiled
checking where to find the target lipo... host tool
checking where to find the target nm... just compiled
checking where to find the target objcopy... just compiled
checking where to find the target objdump... just compiled
checking where to find the target ranlib... just compiled
checking where to find the target readelf... just compiled
checking where to find the target strip... just compiled
checking where to find the target windres... just compiled
checking where to find the target windmc... just compiled
checking whether to enable maintainer-specific portions of Makefiles... no
configure: creating ./config.status
config.status: creating Makefile

== 2018-01-26 11:11:47,819 build_log.py:233 INFO building...
== 2018-01-26 11:11:47,819 easyblock.py:2446 INFO Starting build step
== 2018-01-26 11:11:47,819 easyblock.py:2452 INFO Running method build_step part of step build
== 2018-01-26 11:11:47,820 run.py:183 INFO running cmd:  env LIBS=''  make -j 32  CFLAGS="$CFLAGS -fPIC"  
== 2018-01-26 11:12:00,671 build_log.py:158 ERROR EasyBuild crashed with an error (at easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/vsc_base-2.5.8-py2.7.egg/vsc/utils/exceptions.py:124 in __init__): cmd " env LIBS=''  make -j 32  CFLAGS="$CFLAGS -fPIC" " exited with exit code 2 and output:
make[1]: Entering directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29'
make[1]: Nothing to be done for `all-target'.
Configuring in ./libiberty
Configuring in ./intl
Configuring in ./etc
configure: creating cache ./config.cache
checking whether make sets $(MAKE)... configure: creating cache ./config.cache
checking whether to enable maintainer-specific portions of Makefiles... no
checking for makeinfo... /storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/missing makeinfo --split-size=5000000
configure: WARNING:
*** Makeinfo is missing. Info documentation will not be built.
checking for perl... perl
configure: creating cache ./config.cache
checking for a BSD-compatible install... yes
/usr/bin/install -c
checking for a BSD-compatible install... /usr/bin/install -c
checking whether NLS is requested... yes
checking for msgfmt... checking build system type... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... configure: updating cache ./config.cache
x86_64-pc-linux-gnu
checking host system type... /usr/bin/xgettext
configure: creating ./config.status
checking for msgmerge... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-ar... ar
checking for x86_64-pc-linux-gnu-ranlib... ranlib
checking whether to install libiberty headers and static library... no
configure: target_header_dir = 
checking for x86_64-pc-linux-gnu-gcc... gcc
/usr/bin/msgmerge
checking for x86_64-pc-linux-gnu-gcc... gcc
checking for C compiler default output file name... config.status: creating Makefile
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... make[2]: Entering directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/etc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/etc'

checking for suffix of object files... 
o
checking whether we are using the GNU C compiler... checking for suffix of object files... yes
checking whether gcc accepts -g... o
checking whether we are using the GNU C compiler... yes
checking for gcc option to accept ISO C89... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking build system type... x86_64-pc-linux-gnu
checking host system type... none needed
checking how to run the C preprocessor... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-ranlib... ranlib
checking for library containing strerror... gcc -E
none required
checking how to run the C preprocessor... checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for an ANSI C-conforming const... yes
yes
checking for inline... checking for stdlib.h... inline
checking for sys/types.h... yes
checking for string.h... yes
checking for sys/stat.h... yes
yes
checking for stdlib.h... checking for memory.h... yes
checking for string.h... yes
checking for strings.h... yes
checking for memory.h... yes
checking for inttypes.h... yes
yes
checking for strings.h... checking for stdint.h... yes
yes
checking for inttypes.h... checking for unistd.h... yes
checking for stdint.h... yes
checking minix/config.h usability... yes
checking for unistd.h... yes
checking for off_t... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... yes
checking for size_t... no
checking whether gcc supports -W... yes
checking whether gcc supports -Wall... yes
checking for working alloca.h... yes
checking whether gcc supports -Wwrite-strings... yes
checking for alloca... yes
checking whether gcc supports -Wc++-compat... yes
checking whether gcc supports -Wstrict-prototypes... yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for getpagesize... yes
checking whether gcc supports -Wshadow=local... no
checking whether gcc supports -pedantic ... yes
checking for working mmap... yes
checking whether gcc and cc understand -c and -o together... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking whether integer division by zero raises SIGFPE... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking whether byte ordering is bigendian... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unsigned long long... no
checking for a BSD-compatible install... /usr/bin/install -c
checking for sys/file.h... yes
checking for sys/param.h... yes
checking for inttypes.h... yes
yes
checking for limits.h... checking whether the inttypes.h PRIxNN macros are broken... yes
no
checking for ld used by GCC... checking for stdlib.h... (cached) yes
ld
checking if the linker (ld) is GNU ld... yes
checking for shared library run path origin... checking for malloc.h... yes
done
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for strings.h... (cached) yes
checking argz.h usability... checking for sys/time.h... yes
checking for time.h... yes
checking argz.h presence... yes
yes
checking for argz.h... yes
checking for sys/resource.h... checking limits.h usability... yes
checking for sys/stat.h... (cached) yes
checking for sys/mman.h... yes
checking limits.h presence... yes
checking for limits.h... yes
yes
checking locale.h usability... checking for fcntl.h... yes
checking for alloca.h... yes
checking locale.h presence... yes
checking for locale.h... yes
yes
checking nl_types.h usability... checking for sys/pstat.h... no
checking for sys/sysmp.h... yes
checking nl_types.h presence... yes
checking for nl_types.h... yes
no
checking for sys/sysinfo.h... checking malloc.h usability... yes
checking for machine/hal_sysinfo.h... yes
checking malloc.h presence... no
checking for sys/table.h... yes
checking for malloc.h... yes
checking stddef.h usability... no
checking for sys/sysctl.h... yes
yes
checking stddef.h presence... checking for sys/systemcfg.h... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
no
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking for stdio_ext.h... checking for unistd.h... (cached) yes
checking sys/param.h usability... yes
checking for process.h... no
checking for sys/prctl.h... yes
checking sys/param.h presence... yes
yes
checking for sys/param.h... yes
checking for sys/wait.h that is POSIX.1 compatible... checking for feof_unlocked... yes
checking whether time.h and sys/time.h may both be included... yes
yes
checking whether errno must be declared... checking for fgets_unlocked... no
checking size of int... yes
checking for getc_unlocked... 4
checking size of long... yes
checking for getcwd... 8
checking size of size_t... yes
checking for getegid... 8
checking for long long... yes
checking for geteuid... yes
checking size of long long... yes
checking for getgid... 8
checking for a 64-bit type... yes
checking for getuid... uint64_t
checking for intptr_t... yes
checking for mempcpy... yes
checking for uintptr_t... yes
checking for munmap... yes
checking for ssize_t... yes
checking for putenv... yes
checking for pid_t... yes
checking for setenv... yes
checking for library containing strerror... yes
checking for setlocale... none required
checking for asprintf... yes
checking for stpcpy... yes
checking for atexit... yes
checking for strcasecmp... yes
checking for basename... yes
checking for strdup... yes
checking for bcmp... yes
checking for strtoul... yes
checking for bcopy... yes
checking for tsearch... yes
checking for bsearch... yes
checking for __argz_count... yes
checking for bzero... yes
checking for __argz_stringify... yes
checking for calloc... yes
checking for __argz_next... yes
checking for clock... yes
checking for __fsetlocking... yes
checking for ffs... yes
checking for iconv... yes
checking for getcwd... yes
checking for iconv declaration... install-shextern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
checking for nl_langinfo and CODESET... yes
checking for getpagesize... yes
checking for LC_MESSAGES... yes
checking for gettimeofday... yes
checking for bison... bison
checking version of bison... 3.0.4, ok
checking whether NLS is requested... yes
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking for index... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
checking for aclocal... no
checking for autoconf... no
checking for autoheader... no
configure: updating cache ./config.cache
configure: creating ./config.status
yes
checking for insque... yes
checking for memchr... config.status: creating Makefile
yes
config.status: creating config.intl
checking for memcmp... config.status: creating config.h
config.status: executing default-1 commands
yes
checking for memcpy... Configuring in ./gas
Configuring in ./binutils
Configuring in ./gold
Configuring in ./ld
Configuring in ./gprof
make[2]: Entering directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/intl'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/intl'
yes
checking for memmem... yes
checking for memmove... yes
checking for mempcpy... configure: creating cache ./config.cache
configure: creating cache ./config.cache
configure: creating cache ./config.cache
checking build system type... checking build system type... configure: creating cache ./config.cache
configure: creating cache ./config.cache
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking host system type... checking build system type... x86_64-pc-linux-gnu
checking host system type... checking build system type... x86_64-pc-linux-gnu
checking target system type... yes
x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking host system type... checking for memset... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... gcc
x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... gcc
x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... gcc
x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... gcc
checking for C compiler default output file name... x86_64-pc-linux-gnu
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... checking for C compiler default output file name... checking for C compiler default output file name... yes
checking for mkstemps... checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... a.out
checking whether the C compiler works... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... yes
no
checking for suffix of executables... checking whether we are cross compiling... no
checking for suffix of executables... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
yes
checking for suffix of object files... checking for putenv... 
checking for suffix of object files... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
yes
checking whether gcc accepts -g... checking for random... o
checking whether we are using the GNU C compiler... yes
checking for gcc option to accept ISO C89... yes
checking for gcc option to accept ISO C89... yes
checking whether gcc accepts -g... none needed
checking for library containing strerror... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... yes
checking for gcc option to accept ISO C89... yes
none needed
checking for library containing strerror... checking for rename... none needed
checking for library containing strerror... none required
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... none needed
checking for library containing strerror... none required
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
none required
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... checking for rindex... none required
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for setenv... yes
checking for snprintf... yes
checking for sigsetmask... yes
checking for stpcpy... yes
checking for stpncpy... yes
checking for strcasecmp... yes
checking for strchr... yes
checking for strdup... yes
checking for strncasecmp... yes
checking for strndup... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
yes
checking for strnlen... checking for x86_64-pc-linux-gnu-nm... nm
checking for x86_64-pc-linux-gnu-gcc... gcc
yes
checking for strrchr... checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
yes
checking whether we are cross compiling... no
checking for suffix of executables... checking for strstr... 
checking for suffix of object files... yes
o
checking whether we are using the GNU C compiler... checking for a thread-safe mkdir -p... yes
/usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for strtod... checking for a thread-safe mkdir -p... yes
/usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... checking for style of include used by make... GNU
yes
yes
yes
checking whether gcc accepts -g... checking dependency style of gcc... checking for style of include used by make... checking for a thread-safe mkdir -p... GNU
/usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... checking dependency style of gcc... yes
yes
checking for a thread-safe mkdir -p... yes
checking for gcc option to accept ISO C89... checking for style of include used by make... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... GNU
checking dependency style of gcc... yes
yes
checking for style of include used by make... GNU
checking for strtol... checking dependency style of gcc... none needed
gcc3
checking whether to enable maintainer-specific portions of Makefiles... no
checking for x86_64-pc-linux-gnu-gcc... (cached) gcc
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for x86_64-pc-linux-gnu-gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
gcc3
checking for x86_64-pc-linux-gnu-gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether we are using the GNU C++ compiler... checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking how to run the C preprocessor... yes
no
checking whether g++ accepts -g... gcc3
gcc3
checking for x86_64-pc-linux-gnu-gcc... (cached) gcc
checking for strtoul... checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking how to run the C preprocessor... checking whether we are using the GNU C++ compiler... no
checking dependency style of g++... no
checking whether g++ accepts -g... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... gcc -E
yes
checking for strtoll... no
checking dependency style of g++... checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for strtoull... yes
yes
checking for sys/types.h... checking for strverscmp... yes
checking for sys/types.h... yes
checking for sys/stat.h... none
checking for grep that handles long lines and -e... yes
yes
/usr/bin/grep
checking how to run the C preprocessor... checking for sys/types.h... checking for sys/stat.h... yes
checking for tmpnam... none
checking for bison... bison -y
checking for x86_64-pc-linux-gnu-ranlib... ranlib
checking whether ln -s works... yes
checking how to run the C preprocessor... yes
yes
gcc -E
checking for sys/stat.h... checking for stdlib.h... yes
gcc -E
checking for stdlib.h... checking for egrep... checking for grep that handles long lines and -e... /usr/bin/grep -E
checking for ANSI C header files... /usr/bin/grep
checking for egrep... yes
/usr/bin/grep -E
checking for ANSI C header files... checking for stdlib.h... yes
yes
checking for vasprintf... checking for string.h... yes
checking for string.h... yes
checking for string.h... yes
yes
checking for memory.h... checking for memory.h... yes
yes
checking for memory.h... checking for vfprintf... yes
yes
checking for strings.h... yes
checking for strings.h... yes
checking for sys/types.h... yes
checking for sys/types.h... checking for strings.h... yes
yes
checking for vprintf... yes
yes
checking for inttypes.h... checking for sys/stat.h... yes
yes
checking for inttypes.h... checking for sys/stat.h... checking for inttypes.h... yes
checking for stdlib.h... yes
checking for stdint.h... yes
yes
yes
yes
checking for stdint.h... checking for vsnprintf... checking for stdlib.h... yes
checking for stdint.h... checking for string.h... yes
checking for unistd.h... yes
yes
yes
checking for string.h... checking for unistd.h... checking for unistd.h... yes
yes
checking for memory.h... checking for vsprintf... yes
yes
checking minix/config.h usability... yes
checking for memory.h... checking minix/config.h usability... yes
yes
checking minix/config.h usability... checking for strings.h... yes
yes
checking for strings.h... yes
checking for waitpid... checking for inttypes.h... yes
no
checking minix/config.h presence... checking for inttypes.h... no
checking minix/config.h presence... yes
no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... checking for stdint.h... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... no
checking minix/config.h presence... yes
checking for setproctitle... yes
no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... checking for stdint.h... yes
yes
checking how to print strings... yes
checking for unistd.h... checking how to print strings... printf
checking for a sed that does not truncate output... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/sed
yes
/usr/bin/grep -F
checking how to print strings... checking for ld used by gcc... checking for fgrep... printf
checking for a sed that does not truncate output... ld
checking if the linker (ld) is GNU ld... /usr/bin/grep -F
checking for ld used by gcc... yes
/usr/bin/sed
yes
checking for BSD- or MS-compatible name lister (nm)... nm
checking the name lister (nm) interface... ld
checking if the linker (ld) is GNU ld... checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... checking for unistd.h... yes
checking for BSD- or MS-compatible name lister (nm)... nm
checking the name lister (nm) interface... ld
checking if the linker (ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... no
checking whether alloca needs Cray hooks... nm
checking the name lister (nm) interface... yes
no
checking stack direction for C alloca... checking minix/config.h usability... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... yes
1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
1572864
checking whether the shell understands some XSI constructs... BSD nm
checking whether ln -s works... yes
yes
checking the maximum length of command line arguments... checking whether the shell understands "+="... checking minix/config.h usability... yes
checking for ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... checking for x86_64-pc-linux-gnu-ar... objdump
ar
checking how to recognize dependent libraries... checking for x86_64-pc-linux-gnu-strip... pass_all
checking for x86_64-pc-linux-gnu-ar... 1572864
ar
no
checking whether the shell understands some XSI constructs... checking for x86_64-pc-linux-gnu-strip... checking for strip... no
checking for strip... strip
strip
checking for x86_64-pc-linux-gnu-ranlib... checking for x86_64-pc-linux-gnu-ranlib... ranlib
ranlib
yes
checking whether the shell understands "+="... checking command to parse nm output from gcc object... checking command to parse nm output from gcc object... yes
checking for ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... ar
checking for x86_64-pc-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-pc-linux-gnu-ranlib... ranlib
checking command to parse nm output from gcc object... -1
checking for vfork.h... no
checking for fork... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... ok
no
checking minix/config.h presence... ok
no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking whether NLS is requested... yes
checking for catalogs to be installed... ok
yes
checking for vfork... checking for dlfcn.h... checking for dlfcn.h... yes
checking how to print strings... printf
checking for a sed that does not truncate output... checking for dlfcn.h... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... ld
checking if the linker (ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... nm
checking the name lister (nm) interface... yes
yes
checking for objdir... checking for objdir... .libs
.libs
BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... yes
yes
1572864
checking whether the shell understands some XSI constructs... checking for objdir... checking for working fork... yes
checking whether the shell understands "+="... yes
.libs
checking for ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... ar
checking for x86_64-pc-linux-gnu-strip... no
checking for strip... strip
checking for x86_64-pc-linux-gnu-ranlib... ranlib
checking command to parse nm output from gcc object...  es fi fr id it ja sv uk vi zh_CN es fi fr id it ja sv uk vi zh_CN
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... yes
checking for working vfork... (cached) yes
checking for _doprnt... checking if gcc supports -fno-rtti -fno-exceptions... checking if gcc supports -fno-rtti -fno-exceptions... /usr/bin/msgmerge
checking if gcc supports -fno-rtti -fno-exceptions... checking whether byte ordering is bigendian... ok
no
checking for sys_errlist... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... no
no
checking for gcc option to produce PIC... checking for gcc option to produce PIC... -fPIC -DPIC
-fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... checking if gcc PIC flag -fPIC -DPIC works... checking for dlfcn.h... yes
checking if gcc static flag -static works... yes
checking if gcc static flag -static works... yes
checking if gcc static flag -static works... yes
checking for sys_nerr... yes
no
checking if gcc supports -c -o file.o... no
checking if gcc supports -c -o file.o... checking for objdir... no
checking if gcc supports -c -o file.o... no
checking whether static linking works... .libs
yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... no
checking for gcc >= 4.1... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking whether -lc should be explicitly linked in... yes
checking whether -lc should be explicitly linked in... yes
checking for sys_siglist... yes
checking if gcc supports -fno-rtti -fno-exceptions... checking whether gcc supports -fmerge-constants... no
checking dynamic linker characteristics... no
checking dynamic linker characteristics... no
checking dynamic linker characteristics... yes
yes
checking for thread support... checking for external symbol _system_configuration... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking for glibc >= 2.4... no
yes
checking for omp support... checking for __fsetlocking... yes
checking if gcc static flag -static works... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for dlfcn.h... (cached) yes
checking for windows.h... yes
GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... checking for dlfcn.h... yes
(cached) yes
checking whether to build static libraries... yes
checking for windows.h... checking for dlfcn.h... (cached) yes
checking for windows.h... no
checking if gcc supports -c -o file.o... checking for glibc >= 2.9... yes
checking for canonicalize_file_name... yes
checking for -frandom-seed support... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking for glibc ifunc support... yes
no
no
checking for library containing dlopen... checking for library containing dlopen... checking for dup3... no
checking for library containing dlopen... no
checking dynamic linker characteristics... no
yes
checking for getrlimit... Setting warning flags = -W -Wall -Wstrict-prototypes -Wmissing-prototypes -Wshadow
checking sys/mman.h usability... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
-ldl
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... -ldl
checking for dlfcn.h... (cached) yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... checking for windows.h... yes
checking for getrusage... -ldl
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
yes
checking sys/mman.h presence... no
checking for setmode... yes
checking for sys/mman.h... yes
checking for chsize... no
checking how to compare bootstrapped objects... yes
cmp --ignore-initial=16 $$f1 $$f2
checking for getsysinfo... Setting warning flags = -W -Wall -Wstrict-prototypes -Wmissing-prototypes -Wshadow
checking for bison... bison -y
checking for flex... flex
no
checking whether NLS is requested... yes
checking for catalogs to be installed... no
checking for mmap... checking lex output file root... lex.yy
checking lex library... no
checking for library containing dlopen... Setting warning flags = -W -Wall -Wstrict-prototypes -Wmissing-prototypes -Wshadow
checking whether byte ordering is bigendian... no
checking for gettimeofday... (cached) yes
checking for on_exit... yes
checking for pread... yes
checking for psignal... no
-ldl
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... yes
checking for ftruncate... checking for bison... bison -y
checking for flex... yes
flex
no
checking for pstat_getdynamic... checking lex output file root... lex.yy
checking lex library... yes
checking for ffsll... Setting warning flags = -W -Wall -Wstrict-prototypes -Wmissing-prototypes -Wshadow
checking for LC_MESSAGES... no
checking for pstat_getstatic... yes
yes
checking whether NLS is requested... yes
checking for catalogs to be installed... checking mremap with MREMAP_MAYMOVE...  bg da de eo es fi fr ga hu id it ja ms nl pt_BR ro ru rw sr sv tr uk vi bg da de eo es fi fr ga hu id it ja ms nl pt_BR ro ru rw sr sv tr uk vi
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
no
checking for xgettext... /usr/bin/xgettext
checking for realpath... checking for msgmerge... /usr/bin/msgmerge
yes
checking whether basename is declared... checking whether to enable maintainer-specific portions of Makefiles... no
yes
checking sys/gmon_out.h usability... checking for setrlimit... yes
yes
checking sys/gmon_out.h presence... checking whether ffs is declared... yes
checking for sys/gmon_out.h... yes
yes
checking for a known getopt prototype in unistd.h... checking for sbrk... yes
-lfl
checking whether yytext is a pointer... yes
checking for library containing fabs... checking whether asprintf is declared... yes
checking for spawnve... yes
 bg da de es fi fr ga id it ja ru sr sv tr uk vi zh_CN zh_TW bg da de es fi fr ga id it ja ru sr sv tr uk vi zh_CN zh_TW
checking whether NLS is requested... yes
checking whether vasprintf is declared... checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
checking for msgmerge... yes
no
checking whether snprintf is declared... checking for spawnvpe... /usr/bin/msgmerge
-lm
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... yes
checking whether vsnprintf is declared... no
checking for strerror... -lfl
checking whether yytext is a pointer... Setting warning flags = -W -Wall -Wstrict-prototypes -Wmissing-prototypes -Wshadow
yes
checking whether strverscmp is declared... yes
checking for strsignal... configure: updating cache ./config.cache
configure: creating ./config.status
yes
checking whether NLS is requested... yes
checking for catalogs to be installed... yes
yes
checking for sysconf... checking how to run the C++ preprocessor... yes
checking for sysctl... yes
checking whether NLS is requested... yes
checking for catalogs to be installed... /lib/cpp
yes
configure: error: in `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29/gold':
configure: error: C++ preprocessor "/lib/cpp" fails sanity check
See `config.log' for more details.
checking for sysmp... make[1]: *** [configure-gold] Error 1
make[1]: *** Waiting for unfinished jobs....
no
checking for table...  es fi fr id ja ru rw sv tr uk zh_CN es fi fr id ja ru rw sv tr uk zh_CN
checking whether NLS is requested... yes
checking for msgfmt... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
 bg ca da es fi fr hr id it ja ro ru rw sk sr sv tr uk vi zh_CN zh_TW bg ca da es fi fr hr id it ja ro ru rw sk sr sv tr uk vi zh_CN zh_TW
checking whether NLS is requested... yes
checking for xgettext... /usr/bin/xgettext
checking for msgfmt... checking for msgmerge... /usr/bin/msgfmt
checking for gmsgfmt... /usr/bin/msgfmt
checking for xgettext... /usr/bin/xgettext
/usr/bin/msgmerge
no
checking for msgmerge... checking for times... -lfl
checking whether yytext is a pointer... /usr/bin/msgmerge
checking whether to enable maintainer-specific portions of Makefiles... no
checking for string.h... (cached) yes
yes
checking for stdlib.h... (cached) yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking for wait3... checking for x86_64-pc-linux-gnu-ranlib... (cached) ranlib
checking size of long... checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking errno.h usability... yes
checking for wait4... yes
checking errno.h presence... 8
checking for long long... yes
checking for errno.h... yes
checking for sys/types.h... (cached) yes
checking limits.h usability... yes
checking whether basename is declared... yes
checking limits.h presence... yes
checking for limits.h... yes
yes
checking size of long long... checking locale.h usability... yes
checking whether ffs is declared... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking how to compare bootstrapped objects... cmp --ignore-initial=16 $$f1 $$f2
checking for string.h... (cached) yes
config.status: creating Makefile
yes
checking locale.h presence... checking for strings.h... (cached) yes
yes
config.status: creating po/Makefile.in
checking for locale.h... yes
checking for stdlib.h... (cached) yes
checking time.h usability... yes
checking for unistd.h... (cached) yes
8
checking whether asprintf is declared... checking for string.h... (cached) yes
config.status: creating gconfig.h
checking elf-hints.h usability... checking for strings.h... (cached) yes
config.status: executing depfiles commands
checking for stdlib.h... (cached) yes
yes
checking time.h presence... yes
checking for time.h... yes
checking for unistd.h... (cached) yes
yes
checking for sys/stat.h... (cached) yes
checking fcntl.h usability... checking whether vasprintf is declared... checking whether string.h and strings.h may both be included... yes
checking whether compiling a cross-assembler... no
checking for working alloca.h... yes
config.status: executing libtool commands
yes
checking fcntl.h presence... checking whether snprintf is declared... no
checking elf-hints.h presence... yes
checking for fcntl.h... yes
yes
checking for alloca... config.status: executing default-1 commands
no
checking for elf-hints.h... no
checking sys/file.h usability... checking limits.h usability... config.status: creating po/POTFILES
yes
config.status: creating po/Makefile
checking whether vsnprintf is declared... yes
checking sys/file.h presence... yes
checking limits.h presence... yes
checking for inline... yes
checking for sys/file.h... yes
yes
checking for limits.h... yes
checking limits.h usability... checking locale.h usability... yes
inline
checking for unlink... checking whether calloc is declared... yes
checking limits.h presence... yes
checking locale.h presence... yes
checking for limits.h... yes
yes
checking locale.h usability... checking whether getenv is declared... yes
checking for locale.h... yes
yes
checking sys/param.h usability... checking for sbrk... yes
yes
checking locale.h presence... checking whether getopt is declared... yes
checking for locale.h... yes
yes
checking sys/param.h presence... checking sys/param.h usability... yes
yes
checking for sys/param.h... yes
checking for setlocale... checking fcntl.h usability... yes
checking whether malloc is declared... yes
checking sys/param.h presence... yes
checking fcntl.h presence... yes
yes
checking for sys/param.h... yes
checking for strsignal... yes
checking wchar.h usability... checking whether realloc is declared... yes
checking for fcntl.h... yes
checking sys/file.h usability... yes
checking wchar.h presence... yes
yes
checking for LC_MESSAGES... yes
checking for wchar.h... yes
checking whether sbrk is declared... checking for sys/wait.h that is POSIX.1 compatible... yes
checking sys/file.h presence... yes
checking for sys/file.h... yes
checking sys/time.h usability... yes
checking whether string.h and strings.h may both be included... yes
checking whether strtol is declared... yes
checking for working assert macro... yes
checking sys/time.h presence... yes
checking for working alloca.h... yes
checking for sys/time.h... yes
yes
checking whether strtoul is declared... checking for sys/stat.h... (cached) yes
checking whether string.h and strings.h may both be included... yes
checking whether declaration is required for errno... yes
checking for alloca... yes
yes
checking whether strtoll is declared... checking for glob... no
checking for a known getopt prototype in unistd.h... yes
checking for sbrk... yes
checking whether strtoull is declared... yes
yes
checking whether declaration is required for environ... checking for mkstemp... yes
yes
checking for utimes... checking whether strverscmp is declared... yes
no
checking whether declaration is required for ffs... checking for realpath... yes
checking whether strnlen is declared... yes
checking for setmode... no
checking whether declaration is required for free... yes
checking whether canonicalize_file_name must be declared... yes
checking for sbrk... no
checking for stdlib.h... (cached) yes
no
checking whether declaration is required for malloc... no
checking for getc_unlocked... checking for unistd.h... (cached) yes
checking for getpagesize... (cached) yes
yes
checking for working mmap... checking for setlocale... yes
no
checking whether declaration is required for sbrk... checking for strcoll... yes
checking for waitpid... yes
checking for working strncmp... yes
checking for setlocale... no
checking whether declaration is required for strstr... yes
yes
yes
checking for open... checking for mkstemp... no
configure: updating cache ./config.cache
checking whether free is declared... configure: creating ./config.status
yes
checking for mkdtemp... yes
checking for lseek... yes
checking whether getenv is declared... yes
checking for mbstate_t... yes
yes
checking whether malloc is declared... yes
checking for library containing frexp... checking for close... config.status: creating Makefile
yes
checking whether mempcpy is declared... config.status: creating testsuite/Makefile
none required
checking for LC_MESSAGES... yes
checking for dirent.h that defines DIR... config.status: creating config.h
yes
config.status: executing default commands
checking whether realloc is declared... yes
yes
checking for time_t in time.h... checking for library containing opendir... yes
checking whether stpcpy is declared... yes
checking for time_t in sys/types.h... none required
checking for stdlib.h... (cached) yes
yes
checking for a known getopt prototype in unistd.h... checking for unistd.h... (cached) yes
yes
checking for getpagesize... checking whether strstr is declared... yes
checking for utime.h... yes
checking whether vsnprintf is declared... yes
checking whether asprintf is declared... yes
checking for working mmap... yes
yes
checking whether asprintf is declared... checking whether environ is declared... yes
yes
checking for struct tm.tm_gmtoff in time.h... checking whether fprintf is declared... yes
checking for library containing dlopen... (cached) -ldl
checking for a known getopt prototype in unistd.h... yes
checking for struct stat.st_mtim.tv_sec in sys/stat.h... yes
checking whether getc_unlocked is declared... yes
checking whether strstr is declared... yes
checking for struct stat.st_mtim.tv_nsec in sys/stat.h... yes
yes
yes
checking whether getenv is declared... checking whether free is declared... configure: updating cache ./config.cache
yes
configure: creating ./config.status
yes
checking whether sbrk is declared... checking whether sbrk is declared... yes
yes
checking whether snprintf is declared... checking whether getenv is declared... yes
yes
checking whether stpcpy is declared... checking whether environ is declared... yes
yes
checking whether ANSI C string concatenation works... checking whether strnlen is declared... yes
checking size of void *... yes
checking whether strstr is declared... yes
checking whether vsnprintf is declared... 8
yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for ld used by GCC... ld -m elf_x86_64
checking if the linker (ld -m elf_x86_64) is GNU ld... yes
checking for shared library run path origin... configure: updating cache ./config.cache
configure: creating ./config.status
done
checking for iconv... yes
checking for iconv declaration... install-shextern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);
configure: updating cache ./config.cache
configure: creating ./config.status
config.status: creating .gdbinit
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating po/Makefile.in
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: creating Makefile
config.status: executing default-1 commands
config.status: creating po/Makefile.in
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing default commands
config.status: creating config.h
config.status: executing depfiles commands
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating po/Makefile.in
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
config.status: executing libtool commands
config.status: executing default-1 commands
config.status: creating po/POTFILES
config.status: creating po/Makefile
make[1]: Leaving directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29'
make: *** [all] Error 2
 (at easybuild/software/EasyBuild/3.5.1/lib/python2.7/site-packages/easybuild_framework-3.5.1-py2.7.egg/easybuild/tools/run.py:481 in parse_cmd_output)
== 2018-01-26 11:12:00,672 easyblock.py:2685 WARNING build failed (first 300 chars): cmd " env LIBS=''  make -j 32  CFLAGS="$CFLAGS -fPIC" " exited with exit code 2 and output:
make[1]: Entering directory `/storage/apps/easybuild/build/binutils/2.29/GCCcore-system/binutils-2.29'
make[1]: Nothing to be done for `all-target'.
Configuring in ./libiberty
Configuring in ./intl
Configurin
== 2018-01-26 11:12:00,672 easyblock.py:279 INFO Closing log for application name binutils version 2.29