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Georgia Tsambos gtsambos

  • University of Washington
  • WA, USA
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gtsambos / link_ancestors_demo.ipynb
Created March 16, 2021 12:39
A quick demonstration of link_ancestors
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gtsambos / binning-tidyverse.Rmd
Last active October 14, 2020 12:54
binning-in-tidyverse.Rmd
---
title: "binning-in-tidyverse"
output: rmarkdown::github_document
---
```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = TRUE)
```
```{r load-packages, echo=FALSE}
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gtsambos / wiki.md
Last active November 14, 2019 22:53

Aim

To see whether the detailed IBD information that we can extract from tree sequences may be useful in large-scale simulation studies.

Motivating paper

[1] Gladstein, A. L., & Hammer, M. F. (2019). Substructured Population Growth in the Ashkenazi Jews Inferred with Approximate Bayesian Computation. Molecular Biology and Evolution, 36(6), 1162–1171. https://doi.org/10.1093/molbev/msz047

In this paper, the authors conducted a large-scale ABC simulation study to investigate the history of Ashkenazi Jewish people.

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gtsambos / find-extant-lineages.ipynb
Created August 4, 2019 21:51
find extant lineages
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gtsambos / two-population-split.ipynb
Created July 10, 2019 17:46
Divergence of two populations with msprime.
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gtsambos / load_text-error.ipynb
Created April 1, 2019 06:54
Shows an error I get when I try to use load_text in tskit.
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gtsambos / intervals-bug.ipynb
Last active December 22, 2018 08:48
Notebook showing problems using latest release of intervals.
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gtsambos / test.ipynb
Created December 12, 2018 01:33
test
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