guyjacks

$ surge list

/Users/guyjacks/.config/yarn/global/node_modules/surge/lib/middleware/list.js:44
          project.timeAgoInWords.grey,
                                 ^

TypeError: Cannot read property 'grey' of undefined
    at /Users/guyjacks/.config/yarn/global/node_modules/surge/lib/middleware/list.js:44:34
    at Array.forEach (<anonymous>)
    at Request._callback (/Users/guyjacks/.config/yarn/global/node_modules/surge/lib/middleware/list.js:33:12)

guyjacks

Tried: docker-compose run --rm web py.test

WARNING: The DJANGO_CORS_ORIGIN_WHITELIST variable is not set. Defaulting to a blank string.
Starting one_raft_conventions_backend_postgres_1 ... done
============================================================================ test session starts ============================================================================
platform linux -- Python 3.7.0, pytest-4.0.2, py-1.7.0, pluggy-0.8.0
Django settings: config.settings.test (from ini file)
rootdir: /code, inifile: pytest.ini
plugins: mock-1.10.0, django-3.4.4, cov-2.6.0
collected 3 items / 1 errors

guyjacks

{
  "pk": "82cbb5f1-ea98-44b4-bf78-4106460430e4",
  "label": "KMT2C mut",
  "saved": true,
  "filters": [
    {
      "type": "intersection",
      "filters": [
        {
          "type": "gene",

guyjacks

# WHAT I HAVE TRIED

def parse_intersection(self, filters):
    # each of these two filters are uuids
    first_filter = filters[0]['gene']
    second_filter = filters[1]['gene']
    
    # Doesn't work - seems to ignore one of the Qs
    # This seems to be the ideal way to do this, but it doesn't work.
    #qs = Rule.objects.filter(Q(gene_traits__pk=first_filter) and Q(gene_traits__pk=second_filter))

guyjacks

-- qs = Rule.objects.filter(Q(gene_traits__pk=first_filter) and Q(gene_traits__pk=second_filter))
SELECT "datasets_rules"."id",
       "datasets_rules"."created",
       "datasets_rules"."modified",
       "datasets_rules"."label",
       "datasets_rules"."biopsy_batch_id"
FROM   "datasets_rules"
       INNER JOIN "datasets_rules_gene_traits"
               ON ( "datasets_rules"."id" =
                    "datasets_rules_gene_traits"."rule_id" )

guyjacks

    def parse_intersection(self, filters):
        first_filter = filters[0]['gene']
        second_filter = filters[1]['gene']
        print('filters', first_filter, second_filter)
        # Doesn't work - seems to ignore one of the Qs
        #qs = Rule.objects.filter(Q(gene_traits__pk=first_filter) and Q(gene_traits__pk=second_filter))

        # Doesn't work - seems to ignore one of the filters.  This should be the same as the query below.
        #qs = Rule.objects.filter(gene_traits__pk=first_filter)

guyjacks

{
	"rule-restraints": {
		"stength": {
			"min": null,
			"max": null
		}
	},
	"match-restraints": {
		"min-rules-matched": null,
		"max-rules-matched": null

guyjacks

"""
# /filters/?q=thrap3
- GET 
    - Return the trait filters matching the search
    - also return a count of rules matching each possible filter

# /queries/
- POST
    - Apply a filter and return the new query
- PUT /queries/<id>/

guyjacks

{
	"rule-restraints": {
		"stength": {
			"min": null,
			"max": null
		}
	},
	"match-restraints": {
		"min-rules-matched": null,
		"max-rules-matched": null

guyjacks

# Gene Trait Rule Filter

{
	"rule-restraints": {
		"stength": {
			"min": null,
			"max": null
		}
	},