UmlsConstants.java

package com.github.h4ste.umls;

import com.google.common.collect.ImmutableSet;
import java.util.Set;

/**
 * These stopwords and semantic categories are from Dina Demner-Fushman
 */
@SuppressWarnings({"unused", "SpellCheckingInspection"})
public final class UmlsConstants {

  private UmlsConstants() {
    throw new UnsupportedOperationException("Unable to instantiate utility class");
  }

  public static final class SemanticTypes {
    private SemanticTypes() {
      throw new UnsupportedOperationException("Unable to instantiate utility class");
    }

    public static final Set<String> PROBLEMS = ImmutableSet.of("cgab", "acab",
        "inpo", "patf", "dsyn", "anab", "neop", "mobd", "sosy", "bact", "fndg",
        "hops");

    public static final Set<String> INTERVENTIONS = ImmutableSet.of("topp", "lbpr",
        "diap", "ftcn", "hlca", "edac", "medd"); // "ftcn", "hlca", "edac", "medd"

    public static final Set<String> DRUGS = ImmutableSet.of("drdd", "clnd", "antb",
        "phsu", "nsba", "strd", "vita", "aapp", "bodm", "orch"); //  "bodm", "orch"

    public static final Set<String> ANATOMY = ImmutableSet.of("bdsy", "bpoc", "tisu",
        "blor", "bsoj", "bdsu", "orga");
  }

  public static final Set<String> GENERAL_PROBLEMS = ImmutableSet.of("diseases",
      "disease", "syndrome", "syndromes", "sign", "signs", "symptom",
      "symptoms", "inflammmation", "disorders", "disorder", "pain",
      "dysfunction", "dysfunctions", "degenerative", "vascular",
      "injury", "psychological", "evaluable disease", "evaluabledisease",
      "adverse effects", "adverseeffects", "critical illness",
      "criticalillness", "complications", "complication");

  public static final Set<String> FALSE_PROBLEMS = ImmutableSet
      .of("problem", "problems", "ischemic", "intermittent",
          "strains", "habituation", "infarction", "advantage", "advantages",
          "blind vision", "purpose", "history", "consumption", "weak",
          "complaints", "block", "findings", "fall", "inf", "secondary",
          "secondaries", "met", "little", "lead", "tear", "feline urological syndrome");

  public static final Set<String> COMPLICATIONS = ImmutableSet.of(
      "complications", "complication", "sideeffects", "side effects",
      "adverse effects");


  public static final Set<String> FALSE_INTERVENTIONS = ImmutableSet.of(
      "a10", "a12", "act", "add", "adrenal", "adult", "administration", "after", "agents", "aim",
      "aims", "alcohol", "algorithms", "aman",
      "analysis", "analysisofsubstances", "any", "assesment", "assessment", "attack",
      "base", "baseline", "bestestimate", "biologicals", "boards", "bodyweight", "bolus",
      "calculated", "casequalifiervalue", "caused", "century", "cholesterol", "class", "colon",
      "comfort", "combination",
      "compression", "computed", "concentrations", "concept", "conclude", "conceptdrug",
      "construction", "control",
      "controlledqualifiervalue", "copper", "correct", "cutting",
      "dates", "deliver", "delivery", "demand", "demands", "derivationprocedure", "destruction",
      "detected", "detection",
      "determinationaspects", "discussion", "documented", "dos", "drivers",
      "electrophoresispolyacrylamidegel", "elevation", "erythro", "evaluate", "evaluation",
      "exploration", "expression", "expressionprocedure",
      "favor", "febrileconvulsion", "functionalability",
      "given", "gold", "guide",
      "icd", "immunology", "incidenceofcases", "includingqualifiervalue", "inform", "inhibitor",
      "inhibitors", "insect",
      "inventory", "inventories", "involvedqualifiervalue", "iron",
      "lead", "life", "light", "line", "link", "liver", "liverextract",
      "maintain", "mechanical", "medication", "medicationsideeffects", "met",
      "nativeamerican", "neo", "nicotine", "notfreeofattribute",
      "overlapping", "oxygen",
      "pace", "package", "parenteral", "pediatric", "phenotype", "polymerasechainreaction",
      "potentiation", "presence", "prevent", "primary", "primarycare",
      "primaryoperation", "prime", "procedure", "procedures", "prompt", "protein", "proven",
      "provide", "pulse", "purpose",
      "qsort",
      "recommending", "redbloodcell", "reduction", "reductionaction", "release", "relief", "remove",
      "removed", "reported",
      "reporting", "revisions", "res", "rises", "rolls",
      "sampling", "saw", "scientificstudy", "sec", "septum", "sleep", "speed", "specific", "stop",
      "stress", "study",
      "supplementation", "support", "supports", "sugar", "sugars", "surgicalconstructionnos",
      "t3", "tape", "task", "tasks", "taskproduct", "teaching", "ten", "tensa", "test", "testing",
      "therapeutic", "thu", "thus",
      "thyroidfunction", "tobacco", "today", "tomorrow", "totalcholesterol", "treatment",
      "titration", "tops", "training", "tumorburden",
      "unit", "unite", "unknown",
      "water", "weight",
      "zinc");


  public static final Set<String> GENERAL_INTERVENTIONS = ImmutableSet
      .of("individualtherapy", "injection", "prevent",
          "medicament", "medications", "medication", "medicines", "drug", "fiber",
          "drugs", "drugdelivery", "extraction", "regimens", "regimen", "medicine",
          "clinicaltreatment", "treatment", "treatments", "therapeutics",
          "therapy", "drugtherapy", "therapies", "therapeuticprocedure",
          "medicaltherapy", "management", "interventions", "intervention",
          "trials", "trial", "homeopathy", "pharmaceutical",
          "pharmaceutical products", "pharmaceuticalproducts",
          "pharmacotherapy", "psychiatry", "pharmacotherapeutic",
          "blindtechnique", "treatedwith", "combinedtreatment", "prevention",
          "relapse prevention", "extendedreleasetablets", "tablets",
          "education", "dosageform", "extendedreleasecapsules", "capsules",
          "beads", "polymer", "placebos", "diagnoses", "differential",
          "drug", "prescriptiondrugs", "procedures", "familystudy",
          "noninvasive diagnosis", "noninvasive diagnosis",
          "noninvasivediagnosis", "differential diagnosis",
          "differentialdiagnosis", "diagnosesdifferential", "education",
          "diagnosticassessment", "nursing", "nebulizer", "pain medications", "scan",
          "isolation precautions", "respiratory isolation");

  public static final Set<String> FALSE_ANATOMY = ImmutableSet
      .of("patch", "cardiac", "cardio", "aortic",
          "pleural", "axillary", "lower", "lobe", "heart", "lung", "mediastinum");

}