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May 11, 2018 20:35
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Travis Erroring on R package install
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| travis_fold:start:worker_info | |
| [0K[33;1mWorker information[0m | |
| hostname: 12607e0a-d790-494c-abc0-33bec19d51ab@1.production-1-worker-org-a-4-gce | |
| version: v3.6.0 https://github.com/travis-ci/worker/tree/170b2a0bb43234479fd1911ba9e4dbcc36dadfad | |
| instance: travis-job-a2fd8785-6b65-4c56-b87e-cbd4d1016e0f travis-ci-garnet-trusty-1512502259-986baf0 (via amqp) | |
| startup: 26.186769693s | |
| travis_fold:end:worker_info | |
| [0Ktravis_fold:start:system_info | |
| [0K[33;1mBuild system information[0m | |
| Build language: ruby | |
| Build group: stable | |
| Build dist: trusty | |
| Build id: 377883907 | |
| Job id: 377883909 | |
| Runtime kernel version: 4.4.0-101-generic | |
| travis-build version: 51ebd738f | |
| [34m[1mBuild image provisioning date and time[0m | |
| Tue Dec 5 19:58:13 UTC 2017 | |
| [34m[1mOperating System Details[0m | |
| Distributor ID: Ubuntu | |
| Description: Ubuntu 14.04.5 LTS | |
| Release: 14.04 | |
| Codename: trusty | |
| [34m[1mCookbooks Version[0m | |
| 7c2c6a6 https://github.com/travis-ci/travis-cookbooks/tree/7c2c6a6 | |
| [34m[1mgit version[0m | |
| git version 2.15.1 | |
| [34m[1mbash version[0m | |
| GNU bash, version 4.3.11(1)-release (x86_64-pc-linux-gnu) | |
| [34m[1mgcc version[0m | |
| gcc (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 | |
| Copyright (C) 2013 Free Software Foundation, Inc. | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| [34m[1mdocker version[0m | |
| Client: | |
| Version: 17.09.0-ce | |
| API version: 1.32 | |
| Go version: go1.8.3 | |
| Git commit: afdb6d4 | |
| Built: Tue Sep 26 22:42:38 2017 | |
| OS/Arch: linux/amd64 | |
| Server: | |
| Version: 17.09.0-ce | |
| API version: 1.32 (minimum version 1.12) | |
| Go version: go1.8.3 | |
| Git commit: afdb6d4 | |
| Built: Tue Sep 26 22:41:20 2017 | |
| OS/Arch: linux/amd64 | |
| Experimental: false | |
| [34m[1mclang version[0m | |
| clang version 5.0.0 (tags/RELEASE_500/final) | |
| Target: x86_64-unknown-linux-gnu | |
| Thread model: posix | |
| InstalledDir: /usr/local/clang-5.0.0/bin | |
| [34m[1mjq version[0m | |
| jq-1.5 | |
| [34m[1mbats version[0m | |
| Bats 0.4.0 | |
| [34m[1mshellcheck version[0m | |
| 0.4.6 | |
| [34m[1mshfmt version[0m | |
| v2.0.0 | |
| [34m[1mccache version[0m | |
| ccache version 3.1.9 | |
| Copyright (C) 2002-2007 Andrew Tridgell | |
| Copyright (C) 2009-2011 Joel Rosdahl | |
| This program is free software; you can redistribute it and/or modify it under | |
| the terms of the GNU General Public License as published by the Free Software | |
| Foundation; either version 3 of the License, or (at your option) any later | |
| version. | |
| [34m[1mcmake version[0m | |
| cmake version 3.9.2 | |
| CMake suite maintained and supported by Kitware (kitware.com/cmake). | |
| [34m[1mheroku version[0m | |
| heroku-cli/6.14.39-addc925 (linux-x64) node-v9.2.0 | |
| [34m[1mimagemagick version[0m | |
| Version: ImageMagick 6.7.7-10 2017-07-31 Q16 http://www.imagemagick.org | |
| [34m[1mmd5deep version[0m | |
| 4.2 | |
| [34m[1mmercurial version[0m | |
| Mercurial Distributed SCM (version 4.2.2) | |
| (see https://mercurial-scm.org for more information) | |
| Copyright (C) 2005-2017 Matt Mackall and others | |
| This is free software; see the source for copying conditions. There is NO | |
| warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. | |
| [34m[1mmysql version[0m | |
| mysql Ver 14.14 Distrib 5.6.33, for debian-linux-gnu (x86_64) using EditLine wrapper | |
| [34m[1mopenssl version[0m | |
| OpenSSL 1.0.1f 6 Jan 2014 | |
| [34m[1mpacker version[0m | |
| Packer v1.0.2 | |
| Your version of Packer is out of date! The latest version | |
| is 1.1.2. You can update by downloading from www.packer.io | |
| [34m[1mpostgresql client version[0m | |
| psql (PostgreSQL) 9.6.6 | |
| [34m[1mragel version[0m | |
| Ragel State Machine Compiler version 6.8 Feb 2013 | |
| Copyright (c) 2001-2009 by Adrian Thurston | |
| [34m[1msubversion version[0m | |
| svn, version 1.8.8 (r1568071) | |
| compiled Aug 10 2017, 17:20:39 on x86_64-pc-linux-gnu | |
| Copyright (C) 2013 The Apache Software Foundation. | |
| This software consists of contributions made by many people; | |
| see the NOTICE file for more information. | |
| Subversion is open source software, see http://subversion.apache.org/ | |
| The following repository access (RA) modules are available: | |
| * ra_svn : Module for accessing a repository using the svn network protocol. | |
| - with Cyrus SASL authentication | |
| - handles 'svn' scheme | |
| * ra_local : Module for accessing a repository on local disk. | |
| - handles 'file' scheme | |
| * ra_serf : Module for accessing a repository via WebDAV protocol using serf. | |
| - using serf 1.3.3 | |
| - handles 'http' scheme | |
| - handles 'https' scheme | |
| [34m[1msudo version[0m | |
| Sudo version 1.8.9p5 | |
| Configure options: --prefix=/usr -v --with-all-insults --with-pam --with-fqdn --with-logging=syslog --with-logfac=authpriv --with-env-editor --with-editor=/usr/bin/editor --with-timeout=15 --with-password-timeout=0 --with-passprompt=[sudo] password for %p: --without-lecture --with-tty-tickets --disable-root-mailer --enable-admin-flag --with-sendmail=/usr/sbin/sendmail --with-timedir=/var/lib/sudo --mandir=/usr/share/man --libexecdir=/usr/lib/sudo --with-sssd --with-sssd-lib=/usr/lib/x86_64-linux-gnu --with-selinux | |
| Sudoers policy plugin version 1.8.9p5 | |
| Sudoers file grammar version 43 | |
| Sudoers path: /etc/sudoers | |
| Authentication methods: 'pam' | |
| Syslog facility if syslog is being used for logging: authpriv | |
| Syslog priority to use when user authenticates successfully: notice | |
| Syslog priority to use when user authenticates unsuccessfully: alert | |
| Send mail if the user is not in sudoers | |
| Use a separate timestamp for each user/tty combo | |
| Lecture user the first time they run sudo | |
| Root may run sudo | |
| Allow some information gathering to give useful error messages | |
| Require fully-qualified hostnames in the sudoers file | |
| Visudo will honor the EDITOR environment variable | |
| Set the LOGNAME and USER environment variables | |
| Length at which to wrap log file lines (0 for no wrap): 80 | |
| Authentication timestamp timeout: 15.0 minutes | |
| Password prompt timeout: 0.0 minutes | |
| Number of tries to enter a password: 3 | |
| Umask to use or 0777 to use user's: 022 | |
| Path to mail program: /usr/sbin/sendmail | |
| Flags for mail program: -t | |
| Address to send mail to: root | |
| Subject line for mail messages: *** SECURITY information for %h *** | |
| Incorrect password message: Sorry, try again. | |
| Path to authentication timestamp dir: /var/lib/sudo | |
| Default password prompt: [sudo] password for %p: | |
| Default user to run commands as: root | |
| Value to override user's $PATH with: /usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/snap/bin | |
| Path to the editor for use by visudo: /usr/bin/editor | |
| When to require a password for 'list' pseudocommand: any | |
| When to require a password for 'verify' pseudocommand: all | |
| File descriptors >= 3 will be closed before executing a command | |
| Environment variables to check for sanity: | |
| TZ | |
| TERM | |
| LINGUAS | |
| LC_* | |
| LANGUAGE | |
| LANG | |
| COLORTERM | |
| Environment variables to remove: | |
| RUBYOPT | |
| RUBYLIB | |
| PYTHONUSERBASE | |
| PYTHONINSPECT | |
| PYTHONPATH | |
| PYTHONHOME | |
| TMPPREFIX | |
| ZDOTDIR | |
| READNULLCMD | |
| NULLCMD | |
| FPATH | |
| PERL5DB | |
| PERL5OPT | |
| PERL5LIB | |
| PERLLIB | |
| PERLIO_DEBUG | |
| JAVA_TOOL_OPTIONS | |
| SHELLOPTS | |
| GLOBIGNORE | |
| PS4 | |
| BASH_ENV | |
| ENV | |
| TERMCAP | |
| TERMPATH | |
| TERMINFO_DIRS | |
| TERMINFO | |
| _RLD* | |
| LD_* | |
| PATH_LOCALE | |
| NLSPATH | |
| HOSTALIASES | |
| RES_OPTIONS | |
| LOCALDOMAIN | |
| CDPATH | |
| IFS | |
| Environment variables to preserve: | |
| JAVA_HOME | |
| TRAVIS | |
| CI | |
| DEBIAN_FRONTEND | |
| XAUTHORIZATION | |
| XAUTHORITY | |
| PS2 | |
| PS1 | |
| PATH | |
| LS_COLORS | |
| KRB5CCNAME | |
| HOSTNAME | |
| HOME | |
| DISPLAY | |
| COLORS | |
| Locale to use while parsing sudoers: C | |
| Directory in which to store input/output logs: /var/log/sudo-io | |
| File in which to store the input/output log: %{seq} | |
| Add an entry to the utmp/utmpx file when allocating a pty | |
| PAM service name to use | |
| PAM service name to use for login shells | |
| Create a new PAM session for the command to run in | |
| Maximum I/O log sequence number: 0 | |
| Local IP address and netmask pairs: | |
| 10.240.0.28/255.255.255.255 | |
| 172.17.0.1/255.255.0.0 | |
| Sudoers I/O plugin version 1.8.9p5 | |
| [34m[1mgzip version[0m | |
| gzip 1.6 | |
| Copyright (C) 2007, 2010, 2011 Free Software Foundation, Inc. | |
| Copyright (C) 1993 Jean-loup Gailly. | |
| This is free software. You may redistribute copies of it under the terms of | |
| the GNU General Public License <http://www.gnu.org/licenses/gpl.html>. | |
| There is NO WARRANTY, to the extent permitted by law. | |
| Written by Jean-loup Gailly. | |
| [34m[1mzip version[0m | |
| Copyright (c) 1990-2008 Info-ZIP - Type 'zip "-L"' for software license. | |
| This is Zip 3.0 (July 5th 2008), by Info-ZIP. | |
| Currently maintained by E. Gordon. Please send bug reports to | |
| the authors using the web page at www.info-zip.org; see README for details. | |
| Latest sources and executables are at ftp://ftp.info-zip.org/pub/infozip, | |
| as of above date; see http://www.info-zip.org/ for other sites. | |
| Compiled with gcc 4.8.2 for Unix (Linux ELF) on Oct 21 2013. | |
| Zip special compilation options: | |
| USE_EF_UT_TIME (store Universal Time) | |
| BZIP2_SUPPORT (bzip2 library version 1.0.6, 6-Sept-2010) | |
| bzip2 code and library copyright (c) Julian R Seward | |
| (See the bzip2 license for terms of use) | |
| SYMLINK_SUPPORT (symbolic links supported) | |
| LARGE_FILE_SUPPORT (can read and write large files on file system) | |
| ZIP64_SUPPORT (use Zip64 to store large files in archives) | |
| UNICODE_SUPPORT (store and read UTF-8 Unicode paths) | |
| STORE_UNIX_UIDs_GIDs (store UID/GID sizes/values using new extra field) | |
| UIDGID_NOT_16BIT (old Unix 16-bit UID/GID extra field not used) | |
| [encryption, version 2.91 of 05 Jan 2007] (modified for Zip 3) | |
| Encryption notice: | |
| The encryption code of this program is not copyrighted and is | |
| put in the public domain. It was originally written in Europe | |
| and, to the best of our knowledge, can be freely distributed | |
| in both source and object forms from any country, including | |
| the USA under License Exception TSU of the U.S. Export | |
| Administration Regulations (section 740.13(e)) of 6 June 2002. | |
| Zip environment options: | |
| ZIP: [none] | |
| ZIPOPT: [none] | |
| [34m[1mvim version[0m | |
| VIM - Vi IMproved 7.4 (2013 Aug 10, compiled Nov 24 2016 16:43:18) | |
| Included patches: 1-52 | |
| Extra patches: 8.0.0056 | |
| Modified by pkg-vim-maintainers@lists.alioth.debian.org | |
| Compiled by buildd@ | |
| Huge version without GUI. Features included (+) or not (-): | |
| +acl +farsi +mouse_netterm +syntax | |
| +arabic +file_in_path +mouse_sgr +tag_binary | |
| +autocmd +find_in_path -mouse_sysmouse +tag_old_static | |
| -balloon_eval +float +mouse_urxvt -tag_any_white | |
| -browse +folding +mouse_xterm -tcl | |
| ++builtin_terms -footer +multi_byte +terminfo | |
| +byte_offset +fork() +multi_lang +termresponse | |
| +cindent +gettext -mzscheme +textobjects | |
| -clientserver -hangul_input +netbeans_intg +title | |
| -clipboard +iconv +path_extra -toolbar | |
| +cmdline_compl +insert_expand -perl +user_commands | |
| +cmdline_hist +jumplist +persistent_undo +vertsplit | |
| +cmdline_info +keymap +postscript +virtualedit | |
| +comments +langmap +printer +visual | |
| +conceal +libcall +profile +visualextra | |
| +cryptv +linebreak +python +viminfo | |
| +cscope +lispindent -python3 +vreplace | |
| +cursorbind +listcmds +quickfix +wildignore | |
| +cursorshape +localmap +reltime +wildmenu | |
| +dialog_con -lua +rightleft +windows | |
| +diff +menu -ruby +writebackup | |
| +digraphs +mksession +scrollbind -X11 | |
| -dnd +modify_fname +signs -xfontset | |
| -ebcdic +mouse +smartindent -xim | |
| +emacs_tags -mouseshape -sniff -xsmp | |
| +eval +mouse_dec +startuptime -xterm_clipboard | |
| +ex_extra +mouse_gpm +statusline -xterm_save | |
| +extra_search -mouse_jsbterm -sun_workshop -xpm | |
| system vimrc file: "$VIM/vimrc" | |
| user vimrc file: "$HOME/.vimrc" | |
| 2nd user vimrc file: "~/.vim/vimrc" | |
| user exrc file: "$HOME/.exrc" | |
| fall-back for $VIM: "/usr/share/vim" | |
| Compilation: gcc -c -I. -Iproto -DHAVE_CONFIG_H -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -U_FORTIFY_SOURCE -D_FORTIFY_SOURCE=1 | |
| Linking: gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed -o vim -lm -ltinfo -lnsl -lselinux -lacl -lattr -lgpm -ldl -L/usr/lib/python2.7/config-x86_64-linux-gnu -lpython2.7 -lpthread -ldl -lutil -lm -Xlinker -export-dynamic -Wl,-O1 -Wl,-Bsymbolic-functions | |
| [34m[1miptables version[0m | |
| iptables v1.4.21 | |
| [34m[1mcurl version[0m | |
| curl 7.35.0 (x86_64-pc-linux-gnu) libcurl/7.35.0 OpenSSL/1.0.1f zlib/1.2.8 libidn/1.28 librtmp/2.3 | |
| [34m[1mwget version[0m | |
| GNU Wget 1.15 built on linux-gnu. | |
| [34m[1mrsync version[0m | |
| rsync version 3.1.0 protocol version 31 | |
| [34m[1mgimme version[0m | |
| v1.2.0 | |
| [34m[1mnvm version[0m | |
| 0.33.6 | |
| [34m[1mperlbrew version[0m | |
| /home/travis/perl5/perlbrew/bin/perlbrew - App::perlbrew/0.80 | |
| [34m[1mphpenv version[0m | |
| rbenv 1.1.1-25-g6aa70b6 | |
| [34m[1mrvm version[0m | |
| rvm 1.29.3 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io] | |
| [34m[1mdefault ruby version[0m | |
| ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] | |
| [34m[1mCouchDB version[0m | |
| couchdb 1.6.1 | |
| [34m[1mElasticSearch version[0m | |
| 5.5.0 | |
| [34m[1mInstalled Firefox version[0m | |
| firefox 56.0.2 | |
| [34m[1mMongoDB version[0m | |
| MongoDB 3.4.10 | |
| [34m[1mPhantomJS version[0m | |
| 2.1.1 | |
| [34m[1mPre-installed PostgreSQL versions[0m | |
| 9.2.24 | |
| 9.3.20 | |
| 9.4.15 | |
| 9.5.10 | |
| 9.6.6 | |
| [34m[1mRabbitMQ Version[0m | |
| 3.6.14 | |
| [34m[1mRedis version[0m | |
| redis-server 4.0.6 | |
| [34m[1mriak version[0m | |
| 2.2.3 | |
| [34m[1mPre-installed Go versions[0m | |
| 1.7.4 | |
| [34m[1mant version[0m | |
| Apache Ant(TM) version 1.9.3 compiled on April 8 2014 | |
| [34m[1mmvn version[0m | |
| Apache Maven 3.5.2 (138edd61fd100ec658bfa2d307c43b76940a5d7d; 2017-10-18T07:58:13Z) | |
| Maven home: /usr/local/maven-3.5.2 | |
| Java version: 1.8.0_151, vendor: Oracle Corporation | |
| Java home: /usr/lib/jvm/java-8-oracle/jre | |
| Default locale: en_US, platform encoding: UTF-8 | |
| OS name: "linux", version: "4.4.0-98-generic", arch: "amd64", family: "unix" | |
| [34m[1mgradle version[0m | |
| ------------------------------------------------------------ | |
| Gradle 4.0.1 | |
| ------------------------------------------------------------ | |
| Build time: 2017-07-07 14:02:41 UTC | |
| Revision: 38e5dc0f772daecca1d2681885d3d85414eb6826 | |
| Groovy: 2.4.11 | |
| Ant: Apache Ant(TM) version 1.9.6 compiled on June 29 2015 | |
| JVM: 1.8.0_151 (Oracle Corporation 25.151-b12) | |
| OS: Linux 4.4.0-98-generic amd64 | |
| [34m[1mlein version[0m | |
| Leiningen 2.8.1 on Java 1.8.0_151 Java HotSpot(TM) 64-Bit Server VM | |
| [34m[1mPre-installed Node.js versions[0m | |
| v4.8.6 | |
| v6.12.0 | |
| v6.12.1 | |
| v8.9 | |
| v8.9.1 | |
| [34m[1mphpenv versions[0m | |
| system | |
| 5.6 | |
| * 5.6.32 (set by /home/travis/.phpenv/version) | |
| 7.0 | |
| 7.0.25 | |
| 7.1 | |
| 7.1.11 | |
| hhvm | |
| hhvm-stable | |
| [34m[1mcomposer --version[0m | |
| Composer version 1.5.2 2017-09-11 16:59:25 | |
| [34m[1mPre-installed Ruby versions[0m | |
| ruby-2.2.7 | |
| ruby-2.3.4 | |
| ruby-2.4.1 | |
| travis_fold:end:system_info | |
| [0K | |
| [32;1mNetwork availability confirmed.[0m | |
| [33;1mRunning apt-get update by default has been disabled.[0m | |
| You can opt into running apt-get update by setting this in your .travis.yml file: | |
| addons: | |
| apt: | |
| update: true | |
| travis_fold:start:git.checkout | |
| [0Ktravis_time:start:12b7a56c | |
| [0K$ git clone --depth=50 --branch=master https://github.com/ha0ye/code-is-science.git ha0ye/code-is-science | |
| Cloning into 'ha0ye/code-is-science'... | |
| travis_time:end:12b7a56c:start=1526067563023243832,finish=1526067563708208256,duration=684964424 | |
| [0K$ cd ha0ye/code-is-science | |
| $ git checkout -qf f050073fdc819fad2e69465fb6631eb49a6c2176 | |
| travis_fold:end:git.checkout | |
| [0Ktravis_fold:start:apt | |
| [0K[33;1mInstalling APT Packages (BETA)[0m | |
| $ export DEBIAN_FRONTEND=noninteractive | |
| travis_time:start:3acca5c8 | |
| [0K$ sudo -E apt-get -yq update &>> ~/apt-get-update.log | |
| travis_time:end:3acca5c8:start=1526067563732359776,finish=1526067569860644049,duration=6128284273 | |
| [0Ktravis_time:start:08b5d5c0 | |
| [0K$ sudo -E apt-get -yq --no-install-suggests --no-install-recommends --force-yes install r-base-dev | |
| Reading package lists... | |
| Building dependency tree... | |
| Reading state information... | |
| The following additional packages will be installed: | |
| cdbs cpp-4.8 debhelper dh-apparmor dh-translations g++-4.8 gcc-4.8 | |
| gcc-4.8-base gfortran gfortran-4.8 intltool intltool-debian libasan0 | |
| libatomic1 libblas-dev libblas3 libencode-locale-perl libfile-listing-perl | |
| libgcc-4.8-dev libgfortran-4.8-dev libgfortran3 libgomp1 libhtml-parser-perl | |
| libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl | |
| libhttp-message-perl libhttp-negotiate-perl libio-html-perl | |
| libio-socket-ssl-perl libitm1 liblapack-dev liblapack3 | |
| liblwp-mediatypes-perl liblwp-protocol-https-perl libnet-http-perl | |
| libnet-ssleay-perl libpaper-utils libpaper1 libquadmath0 libstdc++-4.8-dev | |
| libstdc++6 libtcl8.5 libtk8.5 libtsan0 liburi-perl libwww-perl | |
| libwww-robotrules-perl libxml-parser-perl po-debconf python-scour | |
| r-base-core tcl8.5 tk8.5 | |
| Suggested packages: | |
| devscripts gcc-4.8-locales dh-make apparmor-easyprof g++-4.8-multilib | |
| gcc-4.8-doc libstdc++6-4.8-dbg gcc-4.8-multilib libgcc1-dbg libgomp1-dbg | |
| libitm1-dbg libatomic1-dbg libasan0-dbg libtsan0-dbg libquadmath0-dbg | |
| gfortran-multilib gfortran-doc gfortran-4.8-multilib gfortran-4.8-doc | |
| libgfortran3-dbg libdata-dump-perl libcrypt-ssleay-perl libstdc++-4.8-doc | |
| libauthen-ntlm-perl libmail-box-perl python-rsvg python-cairo ess r-doc-info | |
| | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base | |
| texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra | |
| texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo | |
| texi2html tcl-tclreadline | |
| Recommended packages: | |
| libhtml-format-perl libio-socket-inet6-perl | libio-socket-ip-perl | |
| libhtml-form-perl libhttp-daemon-perl libmailtools-perl | |
| libmail-sendmail-perl r-recommended r-doc-html | |
| The following NEW packages will be installed: | |
| cdbs debhelper dh-apparmor dh-translations gfortran gfortran-4.8 intltool | |
| intltool-debian libblas-dev libblas3 libencode-locale-perl | |
| libfile-listing-perl libgfortran-4.8-dev libgfortran3 libhtml-parser-perl | |
| libhtml-tagset-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl | |
| libhttp-message-perl libhttp-negotiate-perl libio-html-perl | |
| libio-socket-ssl-perl liblapack-dev liblapack3 liblwp-mediatypes-perl | |
| liblwp-protocol-https-perl libnet-http-perl libnet-ssleay-perl | |
| libpaper-utils libpaper1 libtcl8.5 libtk8.5 liburi-perl libwww-perl | |
| libwww-robotrules-perl libxml-parser-perl po-debconf python-scour | |
| r-base-core r-base-dev tcl8.5 tk8.5 | |
| The following packages will be upgraded: | |
| cpp-4.8 g++-4.8 gcc-4.8 gcc-4.8-base libasan0 libatomic1 libgcc-4.8-dev | |
| libgomp1 libitm1 libquadmath0 libstdc++-4.8-dev libstdc++6 libtsan0 | |
| 13 upgraded, 43 newly installed, 0 to remove and 172 not upgraded. | |
| Need to get 65.3 MB of archives. | |
| After this operation, 82.5 MB of additional disk space will be used. | |
| Get:1 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libatomic1 amd64 4.8.4-2ubuntu1~14.04.4 [8,630 B] | |
| Get:2 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libitm1 amd64 4.8.4-2ubuntu1~14.04.4 [28.6 kB] | |
| Get:3 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libgomp1 amd64 4.8.4-2ubuntu1~14.04.4 [23.1 kB] | |
| Get:4 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libasan0 amd64 4.8.4-2ubuntu1~14.04.4 [63.1 kB] | |
| Get:5 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libtsan0 amd64 4.8.4-2ubuntu1~14.04.4 [94.8 kB] | |
| Get:6 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libquadmath0 amd64 4.8.4-2ubuntu1~14.04.4 [126 kB] | |
| Get:7 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 g++-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [18.0 MB] | |
| Get:8 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 gcc-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [5,040 kB] | |
| Get:9 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 cpp-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [4,452 kB] | |
| Get:10 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libstdc++-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [1,051 kB] | |
| Get:11 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libgcc-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [1,688 kB] | |
| Get:12 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 gcc-4.8-base amd64 4.8.4-2ubuntu1~14.04.4 [16.7 kB] | |
| Get:13 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libstdc++6 amd64 4.8.4-2ubuntu1~14.04.4 [260 kB] | |
| Get:14 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libgfortran3 amd64 4.8.4-2ubuntu1~14.04.4 [248 kB] | |
| Get:15 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libpaper1 amd64 1.1.24+nmu2ubuntu3 [13.4 kB] | |
| Get:16 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libtcl8.5 amd64 8.5.15-2ubuntu1 [684 kB] | |
| Get:17 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libtk8.5 amd64 8.5.15-2ubuntu3 [641 kB] | |
| Get:18 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 intltool-debian all 0.35.0+20060710.1 [31.6 kB] | |
| Get:19 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] | |
| Get:20 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 dh-apparmor all 2.10.95-0ubuntu2.6~14.04.3 [11.6 kB] | |
| Get:21 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 debhelper all 9.20131227ubuntu1 [604 kB] | |
| Get:22 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 liburi-perl all 1.60-1 [89.6 kB] | |
| Get:23 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libencode-locale-perl all 1.03-1 [12.4 kB] | |
| Get:24 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhttp-date-perl all 6.02-1 [10.4 kB] | |
| Get:25 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libfile-listing-perl all 6.04-1 [9,774 B] | |
| Get:26 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhtml-tagset-perl all 3.20-2 [13.5 kB] | |
| Get:27 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhtml-parser-perl amd64 3.71-1build1 [98.2 kB] | |
| Get:28 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhtml-tree-perl all 5.03-1 [215 kB] | |
| Get:29 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libio-html-perl all 1.00-1 [15.7 kB] | |
| Get:30 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 liblwp-mediatypes-perl all 6.02-1 [21.7 kB] | |
| Get:31 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhttp-message-perl all 6.06-1 [78.7 kB] | |
| Get:32 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhttp-cookies-perl all 6.00-2 [23.3 kB] | |
| Get:33 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libhttp-negotiate-perl all 6.00-2 [13.4 kB] | |
| Get:34 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libnet-ssleay-perl amd64 1.58-1 [243 kB] | |
| Get:35 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libio-socket-ssl-perl all 1.965-1ubuntu1 [73.7 kB] | |
| Get:36 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libnet-http-perl all 6.06-1 [24.2 kB] | |
| Get:37 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 liblwp-protocol-https-perl all 6.04-2ubuntu0.1 [7,644 B] | |
| Get:38 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libwww-robotrules-perl all 6.01-1 [14.1 kB] | |
| Get:39 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libwww-perl all 6.05-2 [146 kB] | |
| Get:40 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libxml-parser-perl amd64 2.41-1build3 [294 kB] | |
| Get:41 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 intltool all 0.50.2-2 [52.0 kB] | |
| Get:42 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 dh-translations all 121 [21.6 kB] | |
| Get:43 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 python-scour all 0.26-3build1 [40.5 kB] | |
| Get:44 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 cdbs all 0.4.122ubuntu2 [42.1 kB] | |
| Get:45 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 libgfortran-4.8-dev amd64 4.8.4-2ubuntu1~14.04.4 [268 kB] | |
| Get:46 http://mirror.jmu.edu/pub/ubuntu trusty-updates/main amd64 gfortran-4.8 amd64 4.8.4-2ubuntu1~14.04.4 [4,733 kB] | |
| Get:47 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 gfortran amd64 4:4.8.2-1ubuntu6 [1,252 B] | |
| Get:48 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libblas3 amd64 1.2.20110419-7 [215 kB] | |
| Get:49 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libblas-dev amd64 1.2.20110419-7 [240 kB] | |
| Get:50 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 liblapack3 amd64 3.5.0-2ubuntu1 [1,730 kB] | |
| Get:51 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 liblapack-dev amd64 3.5.0-2ubuntu1 [1,740 kB] | |
| Get:52 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 libpaper-utils amd64 1.1.24+nmu2ubuntu3 [8,244 B] | |
| Get:53 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 tcl8.5 amd64 8.5.15-2ubuntu1 [13.9 kB] | |
| Get:54 http://mirror.jmu.edu/pub/ubuntu trusty/main amd64 tk8.5 amd64 8.5.15-2ubuntu3 [12.0 kB] | |
| Get:55 http://mirror.jmu.edu/pub/ubuntu trusty/universe amd64 r-base-core amd64 3.0.2-1ubuntu1 [21.5 MB] | |
| Get:56 http://mirror.jmu.edu/pub/ubuntu trusty/universe amd64 r-base-dev all 3.0.2-1ubuntu1 [3,952 B] | |
| Extracting templates from packages: 53% | |
| Extracting templates from packages: 100% | |
| Preconfiguring packages ... | |
| Fetched 65.3 MB in 3s (18.5 MB/s) | |
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| (Reading database ... 93696 files and directories currently installed.) | |
| Preparing to unpack .../libatomic1_4.8.4-2ubuntu1~14.04.4_amd64.deb ... | |
| Unpacking libatomic1:amd64 (4.8.4-2ubuntu1~14.04.4) over (4.8.4-2ubuntu1~14.04.3) ... | |
| Preparing to unpack .../libitm1_4.8.4-2ubuntu1~14.04.4_amd64.deb ... | |
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| Processing triggers for ccache (3.1.9-1) ... | |
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| Processing triggers for man-db (2.6.7.1-1ubuntu1) ... | |
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| Setting up libstdc++6:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
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| Preparing to unpack .../libblas-dev_1.2.20110419-7_amd64.deb ... | |
| Unpacking libblas-dev (1.2.20110419-7) ... | |
| Selecting previously unselected package liblapack3. | |
| Preparing to unpack .../liblapack3_3.5.0-2ubuntu1_amd64.deb ... | |
| Unpacking liblapack3 (3.5.0-2ubuntu1) ... | |
| Selecting previously unselected package liblapack-dev. | |
| Preparing to unpack .../liblapack-dev_3.5.0-2ubuntu1_amd64.deb ... | |
| Unpacking liblapack-dev (3.5.0-2ubuntu1) ... | |
| Selecting previously unselected package libpaper-utils. | |
| Preparing to unpack .../libpaper-utils_1.1.24+nmu2ubuntu3_amd64.deb ... | |
| Unpacking libpaper-utils (1.1.24+nmu2ubuntu3) ... | |
| Selecting previously unselected package tcl8.5. | |
| Preparing to unpack .../tcl8.5_8.5.15-2ubuntu1_amd64.deb ... | |
| Unpacking tcl8.5 (8.5.15-2ubuntu1) ... | |
| Selecting previously unselected package tk8.5. | |
| Preparing to unpack .../tk8.5_8.5.15-2ubuntu3_amd64.deb ... | |
| Unpacking tk8.5 (8.5.15-2ubuntu3) ... | |
| Selecting previously unselected package r-base-core. | |
| Preparing to unpack .../r-base-core_3.0.2-1ubuntu1_amd64.deb ... | |
| Unpacking r-base-core (3.0.2-1ubuntu1) ... | |
| Selecting previously unselected package r-base-dev. | |
| Preparing to unpack .../r-base-dev_3.0.2-1ubuntu1_all.deb ... | |
| Unpacking r-base-dev (3.0.2-1ubuntu1) ... | |
| Processing triggers for man-db (2.6.7.1-1ubuntu1) ... | |
| Processing triggers for ccache (3.1.9-1) ... | |
| Updating symlinks in /usr/lib/ccache ... | |
| Processing triggers for install-info (5.2.0.dfsg.1-2) ... | |
| Processing triggers for hicolor-icon-theme (0.13-1) ... | |
| Processing triggers for mime-support (3.54ubuntu1.1) ... | |
| Setting up libatomic1:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libitm1:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libgomp1:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libasan0:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libtsan0:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libquadmath0:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up cpp-4.8 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libgcc-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up gcc-4.8 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libstdc++-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up g++-4.8 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libgfortran3:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up libpaper1:amd64 (1.1.24+nmu2ubuntu3) ... | |
| Creating config file /etc/papersize with new version | |
| Setting up libtcl8.5:amd64 (8.5.15-2ubuntu1) ... | |
| Setting up libtk8.5:amd64 (8.5.15-2ubuntu3) ... | |
| Setting up intltool-debian (0.35.0+20060710.1) ... | |
| Setting up po-debconf (1.0.16+nmu2ubuntu1) ... | |
| Setting up dh-apparmor (2.10.95-0ubuntu2.6~14.04.3) ... | |
| Setting up debhelper (9.20131227ubuntu1) ... | |
| Setting up liburi-perl (1.60-1) ... | |
| Setting up libencode-locale-perl (1.03-1) ... | |
| Setting up libhttp-date-perl (6.02-1) ... | |
| Setting up libfile-listing-perl (6.04-1) ... | |
| Setting up libhtml-tagset-perl (3.20-2) ... | |
| Setting up libhtml-parser-perl (3.71-1build1) ... | |
| Setting up libhtml-tree-perl (5.03-1) ... | |
| Setting up libio-html-perl (1.00-1) ... | |
| Setting up liblwp-mediatypes-perl (6.02-1) ... | |
| Setting up libhttp-message-perl (6.06-1) ... | |
| Setting up libhttp-cookies-perl (6.00-2) ... | |
| Setting up libhttp-negotiate-perl (6.00-2) ... | |
| Setting up libnet-ssleay-perl (1.58-1) ... | |
| Setting up libio-socket-ssl-perl (1.965-1ubuntu1) ... | |
| Setting up libnet-http-perl (6.06-1) ... | |
| Setting up libwww-robotrules-perl (6.01-1) ... | |
| Setting up python-scour (0.26-3build1) ... | |
| Setting up libgfortran-4.8-dev:amd64 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up gfortran-4.8 (4.8.4-2ubuntu1~14.04.4) ... | |
| Setting up gfortran (4:4.8.2-1ubuntu6) ... | |
| update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode | |
| Setting up libblas3 (1.2.20110419-7) ... | |
| update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode | |
| Setting up libblas-dev (1.2.20110419-7) ... | |
| update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode | |
| Setting up liblapack3 (3.5.0-2ubuntu1) ... | |
| update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode | |
| Setting up liblapack-dev (3.5.0-2ubuntu1) ... | |
| update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode | |
| Setting up libpaper-utils (1.1.24+nmu2ubuntu3) ... | |
| Setting up tcl8.5 (8.5.15-2ubuntu1) ... | |
| Setting up tk8.5 (8.5.15-2ubuntu3) ... | |
| Setting up r-base-core (3.0.2-1ubuntu1) ... | |
| Creating config file /etc/R/Renviron with new version | |
| Setting up liblwp-protocol-https-perl (6.04-2ubuntu0.1) ... | |
| Setting up libwww-perl (6.05-2) ... | |
| Setting up libxml-parser-perl (2.41-1build3) ... | |
| Setting up intltool (0.50.2-2) ... | |
| Setting up dh-translations (121) ... | |
| Setting up cdbs (0.4.122ubuntu2) ... | |
| Setting up r-base-dev (3.0.2-1ubuntu1) ... | |
| Processing triggers for libc-bin (2.19-0ubuntu6.13) ... | |
| W: --force-yes is deprecated, use one of the options starting with --allow instead. | |
| travis_time:end:08b5d5c0:start=1526067569865710617,finish=1526067586863585984,duration=16997875367 | |
| [0Ktravis_fold:end:apt | |
| [0K | |
| [33;1mSetting environment variables from repository settings[0m | |
| $ export GIT_EMAIL=[secure] | |
| $ export GITHUB_TOKEN=[secure] | |
| [33;1mSetting environment variables from .travis.yml[0m | |
| $ export GIT_NAME=Hao | |
| $ export GITHUB_USER=ha0ye | |
| $ export GITHUB_REPO=code-is-science | |
| $ export TARGET_BRANCH=master | |
| travis_fold:start:rvm | |
| [0Ktravis_time:start:2b97a5ec | |
| [0K$ rvm use default | |
| Using /home/travis/.rvm/gems/ruby-2.4.1 | |
| [32;1m** Updating RubyGems to the latest version for security reasons. **[0m | |
| [32;1m** If you need an older version, you can downgrade with 'gem update --system OLD_VERSION'. **[0m | |
| travis_time:end:2b97a5ec:start=1526067586882883282,finish=1526067590780280644,duration=3897397362 | |
| [0Ktravis_fold:end:rvm | |
| [0Ktravis_fold:start:ruby.versions | |
| [0K$ ruby --version | |
| ruby 2.4.1p111 (2017-03-22 revision 58053) [x86_64-linux] | |
| $ rvm --version | |
| rvm 1.29.3 (latest) by Michal Papis, Piotr Kuczynski, Wayne E. Seguin [https://rvm.io] | |
| $ bundle --version | |
| Bundler version 1.16.1 | |
| $ gem --version | |
| 2.7.6 | |
| travis_fold:end:ruby.versions | |
| [0Ktravis_fold:start:before_install.1 | |
| [0Ktravis_time:start:0811a487 | |
| [0K$ git config user.name "${GIT_NAME}" | |
| travis_time:end:0811a487:start=1526067591219647225,finish=1526067591225772267,duration=6125042 | |
| [0Ktravis_fold:end:before_install.1 | |
| [0Ktravis_fold:start:before_install.2 | |
| [0Ktravis_time:start:004938b0 | |
| [0K$ git config user.email "${GIT_EMAIL}" | |
| travis_time:end:004938b0:start=1526067591232911283,finish=1526067591241493797,duration=8582514 | |
| [0Ktravis_fold:end:before_install.2 | |
| [0Ktravis_fold:start:install.1 | |
| [0Ktravis_time:start:31d4b9b0 | |
| [0K$ wget -O /tmp/hugo.deb https://github.com/gohugoio/hugo/releases/download/v0.40.3/hugo_0.40.3_Linux-64bit.deb | |
| --2018-05-11 19:39:51-- https://github.com/gohugoio/hugo/releases/download/v0.40.3/hugo_0.40.3_Linux-64bit.deb | |
| Resolving github.com (github.com)... 192.30.253.113, 192.30.253.112 | |
| Connecting to github.com (github.com)|192.30.253.113|:443... connected. | |
| HTTP request sent, awaiting response... 302 Found | |
| Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/11180687/316299fe-536e-11e8-87c6-afb1b9d6d3a2?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180511%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20180511T193951Z&X-Amz-Expires=300&X-Amz-Signature=3f205c9e6dc0fe9f1206acd1d154b8eee18d69aef81fe5aab93e3cc47a89173b&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dhugo_0.40.3_Linux-64bit.deb&response-content-type=application%2Foctet-stream [following] | |
| --2018-05-11 19:39:51-- https://github-production-release-asset-2e65be.s3.amazonaws.com/11180687/316299fe-536e-11e8-87c6-afb1b9d6d3a2?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180511%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20180511T193951Z&X-Amz-Expires=300&X-Amz-Signature=3f205c9e6dc0fe9f1206acd1d154b8eee18d69aef81fe5aab93e3cc47a89173b&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3Dhugo_0.40.3_Linux-64bit.deb&response-content-type=application%2Foctet-stream | |
| Resolving github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)... 52.216.16.104 | |
| Connecting to github-production-release-asset-2e65be.s3.amazonaws.com (github-production-release-asset-2e65be.s3.amazonaws.com)|52.216.16.104|:443... connected. | |
| HTTP request sent, awaiting response... 200 OK | |
| Length: 6071026 (5.8M) [application/octet-stream] | |
| Saving to: ‘/tmp/hugo.deb’ | |
| 0K .......... .......... .......... .......... .......... 0% 566K 10s | |
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| 5100K .......... .......... .......... .......... .......... 86% 109M 0s | |
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| 5250K .......... .......... .......... .......... .......... 89% 38.0M 0s | |
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| 5450K .......... .......... .......... .......... .......... 92% 111M 0s | |
| 5500K .......... .......... .......... .......... .......... 93% 5.85M 0s | |
| 5550K .......... .......... .......... .......... .......... 94% 13.4M 0s | |
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| 5850K .......... .......... .......... .......... .......... 99% 16.2M 0s | |
| 5900K .......... .......... ........ 100% 114M=1.0s | |
| 2018-05-11 19:39:52 (5.86 MB/s) - ‘/tmp/hugo.deb’ saved [6071026/6071026] | |
| travis_time:end:31d4b9b0:start=1526067591248086281,finish=1526067592652491734,duration=1404405453 | |
| [0Ktravis_fold:end:install.1 | |
| [0Ktravis_fold:start:install.2 | |
| [0Ktravis_time:start:003ce2ea | |
| [0K$ sudo dpkg -i /tmp/hugo.deb | |
| Selecting previously unselected package hugo. | |
| (Reading database ... 96195 files and directories currently installed.) | |
| Preparing to unpack /tmp/hugo.deb ... | |
| Unpacking hugo (0.40.3) ... | |
| Setting up hugo (0.40.3) ... | |
| travis_time:end:003ce2ea:start=1526067592660441210,finish=1526067593132361774,duration=471920564 | |
| [0Ktravis_fold:end:install.2 | |
| [0Ktravis_time:start:0c6e9e7e | |
| [0K$ hugo -v | |
| INFO 2018/05/11 19:39:53 Using config file: /home/travis/build/ha0ye/code-is-science/config.toml | |
| [?25lBuilding sites … INFO 2018/05/11 19:39:53 syncing static files to /home/travis/build/ha0ye/code-is-science/docs/ | |
| WARN 2018/05/11 19:39:53 No translation bundle found for default language "en" | |
| WARN 2018/05/11 19:39:53 Translation func for language en not found, use default. | |
| WARN 2018/05/11 19:39:53 i18n not initialized, check that you have language file (in i18n) that matches the site language or the default language. | |
| INFO 2018/05/11 19:39:53 found taxonomies: map[string]string{} | |
| INFO 2018/05/11 19:39:53 Downloading: https://api.twitter.com/1/statuses/oembed.json?id=923921750966009857 ... | |
| INFO 2018/05/11 19:39:53 Alias "/posts/page/1/index.html" translated to "posts/page/1/index.html" | |
| INFO 2018/05/11 19:39:53 ... and cached to: /tmp/hugo_cache/1fe3e234ddec4a56ad18c943cec9e5fb | |
| WARN 2018/05/11 19:39:53 [en] Unable to locate layout for "404": [404.html theme/404.html] | |
| [?25h | |
| [K | |
| | EN | |
| +------------------+----+ | |
| Pages | 8 | |
| Paginator pages | 0 | |
| Non-page files | 0 | |
| Static files | 45 | |
| Processed images | 0 | |
| Aliases | 1 | |
| Sitemaps | 1 | |
| Cleaned | 0 | |
| Total in 456 ms | |
| travis_time:end:0c6e9e7e:start=1526067593138261948,finish=1526067593622031136,duration=483769188 | |
| [0K | |
| [32;1mThe command "hugo -v" exited with 0.[0m | |
| travis_time:start:0489f978 | |
| [0K$ sudo Rscript R/install_package_dependencies.R | |
| Installing packages into ‘/usr/local/lib/R/site-library’ | |
| (as ‘lib’ is unspecified) | |
| Warning: dependencies ‘stringr’, ‘knitr’, ‘lazyeval’, ‘ggplot2’, ‘rlang’ are not available | |
| also installing the dependencies ‘promises’, ‘later’, ‘BH’, ‘httpuv’, ‘xtable’, ‘sourcetools’, ‘digest’, ‘R6’, ‘shiny’, ‘backports’, ‘Rcpp’, ‘htmltools’, ‘htmlwidgets’, ‘magrittr’, ‘crosstalk’, ‘yaml’, ‘evaluate’, ‘base64enc’, ‘jsonlite’, ‘rprojroot’, ‘mime’ | |
| trying URL 'http://cran.rstudio.com/src/contrib/promises_1.0.1.tar.gz' | |
| Content type 'application/x-gzip' length 106866 bytes (104 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 104 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/later_0.7.2.tar.gz' | |
| Content type 'application/x-gzip' length 37257 bytes (36 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 36 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/BH_1.66.0-1.tar.gz' | |
| Content type 'application/x-gzip' length 11583445 bytes (11.0 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 11.0 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/httpuv_1.4.3.tar.gz' | |
| Content type 'application/x-gzip' length 1673359 bytes (1.6 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 1.6 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/xtable_1.8-2.tar.gz' | |
| Content type 'application/x-gzip' length 619611 bytes (605 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 605 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/sourcetools_0.1.7.tar.gz' | |
| Content type 'application/x-gzip' length 24155 bytes (23 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 23 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/digest_0.6.15.tar.gz' | |
| Content type 'application/x-gzip' length 122095 bytes (119 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 119 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/R6_2.2.2.tar.gz' | |
| Content type 'application/x-gzip' length 322959 bytes (315 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 315 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/shiny_1.0.5.tar.gz' | |
| Content type 'application/x-gzip' length 2330710 bytes (2.2 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 2.2 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/backports_1.1.2.tar.gz' | |
| Content type 'application/x-gzip' length 10900 bytes (10 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 10 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/Rcpp_0.12.16.tar.gz' | |
| Content type 'application/x-gzip' length 3763400 bytes (3.6 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 3.6 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/htmltools_0.3.6.tar.gz' | |
| Content type 'application/x-gzip' length 45408 bytes (44 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 44 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/htmlwidgets_1.2.tar.gz' | |
| Content type 'application/x-gzip' length 865560 bytes (845 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 845 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/magrittr_1.5.tar.gz' | |
| Content type 'application/x-gzip' length 200504 bytes (195 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 195 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/crosstalk_1.0.0.tar.gz' | |
| Content type 'application/x-gzip' length 563474 bytes (550 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 550 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/yaml_2.1.19.tar.gz' | |
| Content type 'application/x-gzip' length 86157 bytes (84 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 84 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/evaluate_0.10.1.tar.gz' | |
| Content type 'application/x-gzip' length 22177 bytes (21 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 21 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/base64enc_0.1-3.tar.gz' | |
| Content type 'application/x-gzip' length 7833 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 7833 bytes | |
| trying URL 'http://cran.rstudio.com/src/contrib/jsonlite_1.5.tar.gz' | |
| Content type 'application/x-gzip' length 1096810 bytes (1.0 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 1.0 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/rprojroot_1.3-2.tar.gz' | |
| Content type 'application/x-gzip' length 50414 bytes (49 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 49 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/mime_0.5.tar.gz' | |
| Content type 'application/x-gzip' length 12634 bytes (12 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 12 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/lubridate_1.7.4.tar.gz' | |
| Content type 'application/x-gzip' length 449850 bytes (439 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 439 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/DT_0.4.tar.gz' | |
| Content type 'application/x-gzip' length 857807 bytes (837 Kb) | |
| opened URL | |
| ================================================== | |
| downloaded 837 Kb | |
| trying URL 'http://cran.rstudio.com/src/contrib/rmarkdown_1.9.tar.gz' | |
| Content type 'application/x-gzip' length 2096932 bytes (2.0 Mb) | |
| opened URL | |
| ================================================== | |
| downloaded 2.0 Mb | |
| trying URL 'http://cran.rstudio.com/src/contrib/here_0.1.tar.gz' | |
| Content type 'application/x-gzip' length 3607 bytes | |
| opened URL | |
| ================================================== | |
| downloaded 3607 bytes | |
| * installing *source* package ‘BH’ ... | |
| ** package ‘BH’ successfully unpacked and MD5 sums checked | |
| ** inst | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (BH) | |
| * installing *source* package ‘xtable’ ... | |
| ** package ‘xtable’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** data | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (xtable) | |
| * installing *source* package ‘sourcetools’ ... | |
| ** package ‘sourcetools’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -O3 -pipe -g -c Reader.cpp -o Reader.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -O3 -pipe -g -c Tokenizer.cpp -o Tokenizer.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I../inst/include -fpic -O3 -pipe -g -c sourcetools-init.c -o sourcetools-init.o | |
| g++ -shared -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/sourcetools/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (sourcetools) | |
| * installing *source* package ‘digest’ ... | |
| ** package ‘digest’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c aes.c -o aes.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c crc32.c -o crc32.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c digest.c -o digest.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c md5.c -o md5.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c pmurhash.c -o pmurhash.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c raes.c -o raes.o | |
| raes.c: In function ‘AESencryptECB’: | |
| raes.c:67:3: warning: implicit declaration of function ‘MAYBE_REFERENCED’ [-Wimplicit-function-declaration] | |
| if (MAYBE_REFERENCED(text)) text = duplicate(text); | |
| ^ | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sha1.c -o sha1.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sha2.c -o sha2.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c sha256.c -o sha256.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c xxhash.c -o xxhash.o | |
| gcc -std=gnu99 -shared -o digest.so aes.o crc32.o digest.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o xxhash.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/digest/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| Error in dyn.load(file, DLLpath = DLLpath, ...) : | |
| unable to load shared object '/usr/local/lib/R/site-library/digest/libs/digest.so': | |
| /usr/local/lib/R/site-library/digest/libs/digest.so: undefined symbol: MAYBE_REFERENCED | |
| Error: loading failed | |
| Execution halted | |
| ERROR: loading failed | |
| * removing ‘/usr/local/lib/R/site-library/digest’ | |
| * installing *source* package ‘R6’ ... | |
| ** package ‘R6’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (R6) | |
| * installing *source* package ‘backports’ ... | |
| ** package ‘backports’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c dotsElt.c -o dotsElt.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c dotsLength.c -o dotsLength.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c init.c -o init.o | |
| gcc -std=gnu99 -shared -o backports.so dotsElt.o dotsLength.o init.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/backports/libs | |
| ** R | |
| ** byte-compile and prepare package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (backports) | |
| * installing *source* package ‘Rcpp’ ... | |
| ** package ‘Rcpp’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c Date.cpp -o Date.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c Module.cpp -o Module.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c Rcpp_init.cpp -o Rcpp_init.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c api.cpp -o api.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c attributes.cpp -o attributes.o | |
| g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -O3 -pipe -g -c barrier.cpp -o barrier.o | |
| g++ -shared -o Rcpp.so Date.o Module.o Rcpp_init.o api.o attributes.o barrier.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/Rcpp/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| code for methods in class “C++OverloadedMethods” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) | |
| code for methods in class “RcppClass” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) | |
| code for methods in class “RcppClass” was not checked for suspicious field assignments (recommended package ‘codetools’ not available?) | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (Rcpp) | |
| * installing *source* package ‘magrittr’ ... | |
| ** package ‘magrittr’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** byte-compile and prepare package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (magrittr) | |
| * installing *source* package ‘yaml’ ... | |
| ** package ‘yaml’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c api.c -o api.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c dumper.c -o dumper.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c emitter.c -o emitter.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c implicit.c -o implicit.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c loader.c -o loader.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c parser.c -o parser.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c r_emit.c -o r_emit.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c r_ext.c -o r_ext.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c r_parse.c -o r_parse.o | |
| r_parse.c: In function ‘handle_alias’: | |
| r_parse.c:187:7: warning: implicit declaration of function ‘MARK_NOT_MUTABLE’ [-Wimplicit-function-declaration] | |
| MARK_NOT_MUTABLE(s_obj); | |
| ^ | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c reader.c -o reader.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c scanner.c -o scanner.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I. -DNDEBUG -fpic -O3 -pipe -g -c writer.c -o writer.o | |
| gcc -std=gnu99 -shared -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/yaml/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| Error in dyn.load(file, DLLpath = DLLpath, ...) : | |
| unable to load shared object '/usr/local/lib/R/site-library/yaml/libs/yaml.so': | |
| /usr/local/lib/R/site-library/yaml/libs/yaml.so: undefined symbol: MARK_NOT_MUTABLE | |
| Error: loading failed | |
| Execution halted | |
| ERROR: loading failed | |
| * removing ‘/usr/local/lib/R/site-library/yaml’ | |
| ERROR: dependency ‘stringr’ is not available for package ‘evaluate’ | |
| * removing ‘/usr/local/lib/R/site-library/evaluate’ | |
| * installing *source* package ‘base64enc’ ... | |
| ** package ‘base64enc’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c base64.c -o base64.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c uriencode.c -o uriencode.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c utf8.c -o utf8.o | |
| gcc -std=gnu99 -shared -o base64enc.so base64.o uriencode.o utf8.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/base64enc/libs | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (base64enc) | |
| * installing *source* package ‘jsonlite’ ... | |
| ** package ‘jsonlite’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c base64.c -o base64.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_array.c -o collapse_array.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_object.c -o collapse_object.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c collapse_pretty.c -o collapse_pretty.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c escape_chars.c -o escape_chars.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c integer64_to_na.c -o integer64_to_na.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_datelist.c -o is_datelist.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_recordlist.c -o is_recordlist.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c is_scalarlist.c -o is_scalarlist.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c modp_numtoa.c -o modp_numtoa.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c null_to_na.c -o null_to_na.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c num_to_char.c -o num_to_char.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c parse.c -o parse.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c prettify.c -o prettify.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c push_parser.c -o push_parser.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c r-base64.c -o r-base64.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c register.c -o register.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c row_collapse.c -o row_collapse.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c transpose_list.c -o transpose_list.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c validate.c -o validate.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl.c -o yajl/yajl.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_buf.c -o yajl/yajl_buf.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_encode.c -o yajl/yajl_encode.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_gen.c -o yajl/yajl_gen.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_lex.c -o yajl/yajl_lex.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_parser.c -o yajl/yajl_parser.o | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -Iyajl/api -fpic -O3 -pipe -g -c yajl/yajl_tree.c -o yajl/yajl_tree.o | |
| ar rcs libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o | |
| gcc -std=gnu99 -shared -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -L. -lstatyajl -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/jsonlite/libs | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (jsonlite) | |
| * installing *source* package ‘mime’ ... | |
| ** package ‘mime’ successfully unpacked and MD5 sums checked | |
| ** libs | |
| gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic -O3 -pipe -g -c rawmatch.c -o rawmatch.o | |
| gcc -std=gnu99 -shared -o mime.so rawmatch.o -L/usr/lib/R/lib -lR | |
| installing to /usr/local/lib/R/site-library/mime/libs | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (mime) | |
| ERROR: dependency ‘rlang’ is not available for package ‘later’ | |
| * removing ‘/usr/local/lib/R/site-library/later’ | |
| ERROR: dependency ‘digest’ is not available for package ‘htmltools’ | |
| * removing ‘/usr/local/lib/R/site-library/htmltools’ | |
| * installing *source* package ‘rprojroot’ ... | |
| ** package ‘rprojroot’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** inst | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** installing vignettes | |
| ** testing if installed package can be loaded | |
| * DONE (rprojroot) | |
| ERROR: dependency ‘stringr’ is not available for package ‘lubridate’ | |
| * removing ‘/usr/local/lib/R/site-library/lubridate’ | |
| ERROR: dependencies ‘later’, ‘rlang’ are not available for package ‘promises’ | |
| * removing ‘/usr/local/lib/R/site-library/promises’ | |
| ERROR: dependencies ‘htmltools’, ‘yaml’ are not available for package ‘htmlwidgets’ | |
| * removing ‘/usr/local/lib/R/site-library/htmlwidgets’ | |
| ERROR: dependencies ‘knitr’, ‘yaml’, ‘htmltools’, ‘evaluate’, ‘stringr’ are not available for package ‘rmarkdown’ | |
| * removing ‘/usr/local/lib/R/site-library/rmarkdown’ | |
| * installing *source* package ‘here’ ... | |
| ** package ‘here’ successfully unpacked and MD5 sums checked | |
| ** R | |
| ** preparing package for lazy loading | |
| ** help | |
| *** installing help indices | |
| ** building package indices | |
| ** testing if installed package can be loaded | |
| * DONE (here) | |
| ERROR: dependencies ‘promises’, ‘later’ are not available for package ‘httpuv’ | |
| * removing ‘/usr/local/lib/R/site-library/httpuv’ | |
| ERROR: dependencies ‘httpuv’, ‘digest’, ‘htmltools’ are not available for package ‘shiny’ | |
| * removing ‘/usr/local/lib/R/site-library/shiny’ | |
| ERROR: dependencies ‘htmltools’, ‘lazyeval’, ‘shiny’, ‘ggplot2’ are not available for package ‘crosstalk’ | |
| * removing ‘/usr/local/lib/R/site-library/crosstalk’ | |
| ERROR: dependencies ‘htmltools’, ‘htmlwidgets’, ‘crosstalk’ are not available for package ‘DT’ | |
| * removing ‘/usr/local/lib/R/site-library/DT’ | |
| The downloaded source packages are in | |
| ‘/tmp/RtmpcaneuN/downloaded_packages’ | |
| There were 14 warnings (use warnings() to see them) | |
| travis_time:end:0489f978:start=1526067593630109358,finish=1526067673527180968,duration=79897071610 | |
| [0K | |
| [32;1mThe command "sudo Rscript R/install_package_dependencies.R" exited with 0.[0m | |
| travis_time:start:212452c6 | |
| [0K$ Rscript R/render_html.R | |
| Error in loadNamespace(name) : there is no package called ‘rmarkdown’ | |
| Calls: :: ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> | |
| Execution halted | |
| travis_time:end:212452c6:start=1526067673534076020,finish=1526067673667931922,duration=133855902 | |
| [0K | |
| [31;1mThe command "Rscript R/render_html.R" exited with 1.[0m | |
| Done. Your build exited with 1. |
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