My makefile, based on http://git.io/GIs6og, now at https://github.com/kjhealy/pandoc-templates/blob/master/examples/starting_from_markdown/Makefile

makefile

## Makefile based on http://git.io/GIs6og
## Now at https://github.com/kjhealy/pandoc-templates/blob/master/examples/starting_from_markdown/Makefile

## Define standard Markdown extension
MEXT = md

## All markdown files in the working directory
SRC = $(wildcard *.$(MEXT))

## Bibliography
BIB = /home/habi/P/Documents/library.bib

## Pandoc options to use
OPTIONS = markdown+simple_tables+table_captions+yaml_metadata_block+smart

## Get last commit hash
ID := $(shell git rev-parse --short HEAD)

## File names, renamed with git ID at the end
PDFS=$(SRC:.md=.$(ID).pdf)
TYP=$(SRC:.md=.$(ID).pdf)
HTML=$(SRC:.md=.$(ID).html)
TEX=$(SRC:.md=.$(ID).tex)
DOCX=$(SRC:.md=.$(ID).docx)

## Targets
all:	$(PDFS) $(HTML) $(TEX) $(DOC)

pdf:	$(PDFS)
html:	$(HTML)
tex:	$(TEX)
doc:	$(DOCX)

%.$(ID).html:	%.md
	pandoc -r $(OPTIONS) -w html5 -s --bibliography=$(BIB) -o $@ $<

%.$(ID).tex:	%.md
	pandoc -r $(OPTIONS) -w latex -s --bibliography=$(BIB) -o $@ $<

%.$(ID).pdf: %.md
	pandoc -r $(OPTIONS) --bibliography=$(BIB) -o $@ $<
	
%.$(ID).docx:	%.md
	pandoc -r $(OPTIONS) --bibliography=$(BIB) -o $@ $<

clean:
	rm -f *.html *.pdf *.tex *.docx