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November 24, 2020 14:28
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2020-11-23 00:10:06,935 ERROR mympirun.RunAsyncMPI MainThread _post_exitcode: problem occured with cmd ['mpirun', '--file=/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/mpdboot', '--machinefile', '/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/nodes', '-rmk', 'slurm', '-bootstrap', 'slurm', '-genv', 'MKL_NUM_THREADS', '1', '-genv', 'MODULEPATH', '/apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', '-genv', 'LOADEDMODULES', 'cluster/swalot:GCCcore/9.3.0:zlib/1.2.11-GCCcore-9.3.0:binutils/2.34-GCCcore-9.3.0:iccifort/2020.1.217:numactl/2.0.13-GCCcore-9.3.0:UCX/1.8.0-GCCcore-9.3.0:impi/2019.7.217-iccifort-2020.1.217:iimpi/2020a:imkl/2020.1.217-iimpi-2020a:intel/2020a:FDS/6.7.5-intel-2020a:vsc-mympirun/5.2.5', '-genv', 'MODULESHOME', '/usr/share/lmod/lmod', '-genv', 'I_MPI_FALLBACK_DEVICE', '0', '-genv', 'I_MPI_DAT_LIBRARY', 'libdat2.so', '-genv', 'I_MPI_NETMASK', '10.143.0.0/255.255.0.0', '-genv', 'I_MPI_PIN', '1', '-genv', 'I_MPI_FALLBACK', 'disable', '-genv', 'I_MPI_FABRICS', 'shm:dapl', '-genv', 'I_MPI_DAPL_SCALABLE_PROGRESS', '0', '-np', '9', '-envlist', 'LD_LIBRARY_PATH,PATH,PYTHONPATH,I_MPI_HYDRA_TOPOLIB,I_MPI_ROOT,I_MPI_TMPDIR,FI_PROVIDER_PATH,MKL_EXAMPLES,OMP_NUM_THREADS', 'fds', 'PretrelC2.fds']: (shellcmd ['mpirun', '--file=/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/mpdboot', '--machinefile', '/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/nodes', '-rmk', 'slurm', '-bootstrap', 'slurm', '-genv', 'MKL_NUM_THREADS', '1', '-genv', 'MODULEPATH', '/apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', '-genv', 'LOADEDMODULES', 'cluster/swalot:GCCcore/9.3.0:zlib/1.2.11-GCCcore-9.3.0:binutils/2.34-GCCcore-9.3.0:iccifort/2020.1.217:numactl/2.0.13-GCCcore-9.3.0:UCX/1.8.0-GCCcore-9.3.0:impi/2019.7.217-iccifort-2020.1.217:iimpi/2020a:imkl/2020.1.217-iimpi-2020a:intel/2020a:FDS/6.7.5-intel-2020a:vsc-mympirun/5.2.5', '-genv', 'MODULESHOME', '/usr/share/lmod/lmod', '-genv', 'I_MPI_FALLBACK_DEVICE', '0', '-genv', 'I_MPI_DAT_LIBRARY', 'libdat2.so', '-genv', 'I_MPI_NETMASK', '10.143.0.0/255.255.0.0', '-genv', 'I_MPI_PIN', '1', '-genv', 'I_MPI_FALLBACK', 'disable', '-genv', 'I_MPI_FABRICS', 'shm:dapl', '-genv', 'I_MPI_DAPL_SCALABLE_PROGRESS', '0', '-np', '9', '-envlist', 'LD_LIBRARY_PATH,PATH,PYTHONPATH,I_MPI_HYDRA_TOPOLIB,I_MPI_ROOT,I_MPI_TMPDIR,FI_PROVIDER_PATH,MKL_EXAMPLES,OMP_NUM_THREADS', 'fds', 'PretrelC2.fds']) output Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
Assertion failed in file ../../src/util/intel/shm_heap/impi_shm_heap.c at line 926: group_id < group_num | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2af68d949f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2ba97063af7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2ba97006cfc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2ba96ffb37cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2ba970409826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2ba97020f70b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2ba9702f7b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2ba96fd70163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2ba96ffe9395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2ba96f91ff4c] | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2ba970f95555] | |
fds() [0x404ba9] | |
Abort(1) on node 2: Internal error | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2b2bbd3a0f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2af407a23f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2b1272e8cf7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2b12728befc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2b12728057cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2b1272c5b826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2b1272a6170b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2b1272b49b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2b12725c2163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2b127283b395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2b1272171f4c] | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2b12737e7555] | |
fds() [0x404ba9] | |
Abort(1) on node 4: Internal error | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2b3d5a64cf7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2b3d5a07efc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2b3d59fc57cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2b3d5a41b826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2b3d5a22170b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2b3d5a309b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2b3d59d82163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2b3d59ffb395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2b3d59931f4c] | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2b3d5afa7555] | |
fds() [0x404ba9] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2ae8ffac5f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2ae8ff4f7fc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2ae8ff43e7cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2ae8ff894826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2ae8ff69a70b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2ae8ff782b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2ae8ff1fb163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2ae8ff474395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2ae8fedaaf4c] | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2ae900420555] | |
fds() [0x404ba9] | |
Abort(1) on node 5: Internal error | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2b2bbcdd2fc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2b155ef89f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2b155e9bbfc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2b155e9027cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2b155ed58826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2b155eb5e70b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2b155ec46b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2b155e6bf163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2b155e938395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2b155e26ef4c] | |
Abort(1) on node 8: Internal error | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2b155f8e4555] | |
fds() [0x404ba9] | |
Abort(1) on node 7: Internal error | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2af407455fc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2b2bbcd197cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2af40739c7cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2b2bbd16f826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2b2bbcf7570b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2af4077f2826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2af4075f870b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2b2bbd05db46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2af4076e0b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2b2bbcad6163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2af407159163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2b2bbcd4f395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2af4073d2395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPL_backtrace_show+0x1c) [0x2ad23c538f7c] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(MPIR_Assert_fail+0x21) [0x2ad23bf6afc1] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x3cb7cf) [0x2ad23beb17cf] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x821826) [0x2ad23c307826] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x62770b) [0x2ad23c10d70b] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x70fb46) [0x2ad23c1f5b46] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(+0x188163) [0x2ad23bc6e163] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/release/libmpi.so.12(PMPI_Init_thread+0xe5) [0x2ad23bee7395] | |
/apps/gent/CO7/haswell-ib/software/impi/2019.7.217-iccifort-2020.1.217/intel64/lib/libmpifort.so.12(MPI_INIT_THREAD+0x2c) [0x2ad23b81df4c] | |
fds() [0xc898e0] | |
fds() [0x404c92] | |
/lib64/libc.so.6(__libc_start_main+0xf5) [0x2ad23ce93555] | |
fds() [0x404ba9] | |
Abort(1) on node 1: Internal error | |
=================================================================================== | |
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES | |
= RANK 6 PID 5089 RUNNING AT node2707.swalot.os | |
= KILLED BY SIGNAL: 9 (Killed) | |
=================================================================================== | |
=================================================================================== | |
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES | |
= RANK 0 PID 15921 RUNNING AT node2649.swalot.os | |
= KILLED BY SIGNAL: 9 (Killed) | |
=================================================================================== | |
=================================================================================== | |
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES | |
= RANK 3 PID 8619 RUNNING AT node2694.swalot.os | |
= KILLED BY SIGNAL: 9 (Killed) | |
=================================================================================== | |
2020-11-23 00:10:06,936 WARNING mympirun.Coupler_IntelMPI2019_SLURM MainThread main: exitcode 255 > 0; cmd ['mpirun', '--file=/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/mpdboot', '--machinefile', '/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/nodes', '-rmk', 'slurm', '-bootstrap', 'slurm', '-genv', 'MKL_NUM_THREADS', '1', '-genv', 'MODULEPATH', '/apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', '-genv', 'LOADEDMODULES', 'cluster/swalot:GCCcore/9.3.0:zlib/1.2.11-GCCcore-9.3.0:binutils/2.34-GCCcore-9.3.0:iccifort/2020.1.217:numactl/2.0.13-GCCcore-9.3.0:UCX/1.8.0-GCCcore-9.3.0:impi/2019.7.217-iccifort-2020.1.217:iimpi/2020a:imkl/2020.1.217-iimpi-2020a:intel/2020a:FDS/6.7.5-intel-2020a:vsc-mympirun/5.2.5', '-genv', 'MODULESHOME', '/usr/share/lmod/lmod', '-genv', 'I_MPI_FALLBACK_DEVICE', '0', '-genv', 'I_MPI_DAT_LIBRARY', 'libdat2.so', '-genv', 'I_MPI_NETMASK', '10.143.0.0/255.255.0.0', '-genv', 'I_MPI_PIN', '1', '-genv', 'I_MPI_FALLBACK', 'disable', '-genv', 'I_MPI_FABRICS', 'shm:dapl', '-genv', 'I_MPI_DAPL_SCALABLE_PROGRESS', '0', '-np', '9', '-envlist', 'LD_LIBRARY_PATH,PATH,PYTHONPATH,I_MPI_HYDRA_TOPOLIB,I_MPI_ROOT,I_MPI_TMPDIR,FI_PROVIDER_PATH,MKL_EXAMPLES,OMP_NUM_THREADS', 'fds', 'PretrelC2.fds'] | |
2020-11-23 00:10:06,938 ERROR mympirun MainThread Main failed: main: exitcode 255 > 0; cmd ['mpirun', '--file=/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/mpdboot', '--machinefile', '/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/nodes', '-rmk', 'slurm', '-bootstrap', 'slurm', '-genv', 'MKL_NUM_THREADS', '1', '-genv', 'MODULEPATH', '/apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', '-genv', 'LOADEDMODULES', 'cluster/swalot:GCCcore/9.3.0:zlib/1.2.11-GCCcore-9.3.0:binutils/2.34-GCCcore-9.3.0:iccifort/2020.1.217:numactl/2.0.13-GCCcore-9.3.0:UCX/1.8.0-GCCcore-9.3.0:impi/2019.7.217-iccifort-2020.1.217:iimpi/2020a:imkl/2020.1.217-iimpi-2020a:intel/2020a:FDS/6.7.5-intel-2020a:vsc-mympirun/5.2.5', '-genv', 'MODULESHOME', '/usr/share/lmod/lmod', '-genv', 'I_MPI_FALLBACK_DEVICE', '0', '-genv', 'I_MPI_DAT_LIBRARY', 'libdat2.so', '-genv', 'I_MPI_NETMASK', '10.143.0.0/255.255.0.0', '-genv', 'I_MPI_PIN', '1', '-genv', 'I_MPI_FALLBACK', 'disable', '-genv', 'I_MPI_FABRICS', 'shm:dapl', '-genv', 'I_MPI_DAPL_SCALABLE_PROGRESS', '0', '-np', '9', '-envlist', 'LD_LIBRARY_PATH,PATH,PYTHONPATH,I_MPI_HYDRA_TOPOLIB,I_MPI_ROOT,I_MPI_TMPDIR,FI_PROVIDER_PATH,MKL_EXAMPLES,OMP_NUM_THREADS', 'fds', 'PretrelC2.fds'] | |
Traceback (most recent call last): | |
File "/kyukon/home/apps/CO7/haswell-ib/software/vsc-mympirun/5.2.5/lib/python3.6/site-packages/vsc_mympirun-5.2.5-py3.6.egg/vsc/mympirun/main.py", line 120, in main | |
instance.main() | |
File "/kyukon/home/apps/CO7/haswell-ib/software/vsc-mympirun/5.2.5/lib/python3.6/site-packages/vsc_mympirun-5.2.5-py3.6.egg/vsc/mympirun/mpi/mpi.py", line 291, in main | |
self.log.raiseException("main: exitcode %s > 0; cmd %s" % (exitcode, self.mpirun_cmd)) | |
File "/kyukon/home/apps/CO7/haswell-ib/software/vsc-mympirun/5.2.5/lib/python3.6/site-packages/vsc_base-3.1.4-py3.6.egg/vsc/utils/fancylogger.py", line 346, in raiseException | |
raise_with_traceback(exception(message)) | |
File "/apps/gent/CO7/haswell-ib/software/vsc-mympirun/5.2.5/lib/python3.6/site-packages/future-0.18.2-py3.6.egg/future/utils/__init__.py", line 446, in raise_with_traceback | |
raise exc.with_traceback(traceback) | |
Exception: main: exitcode 255 > 0; cmd ['mpirun', '--file=/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/mpdboot', '--machinefile', '/user/gent/438/vsc43806/.mympirun_m4jtq7/33429921_20201123_001005/nodes', '-rmk', 'slurm', '-bootstrap', 'slurm', '-genv', 'MKL_NUM_THREADS', '1', '-genv', 'MODULEPATH', '/apps/gent/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', '-genv', 'LOADEDMODULES', 'cluster/swalot:GCCcore/9.3.0:zlib/1.2.11-GCCcore-9.3.0:binutils/2.34-GCCcore-9.3.0:iccifort/2020.1.217:numactl/2.0.13-GCCcore-9.3.0:UCX/1.8.0-GCCcore-9.3.0:impi/2019.7.217-iccifort-2020.1.217:iimpi/2020a:imkl/2020.1.217-iimpi-2020a:intel/2020a:FDS/6.7.5-intel-2020a:vsc-mympirun/5.2.5', '-genv', 'MODULESHOME', '/usr/share/lmod/lmod', '-genv', 'I_MPI_FALLBACK_DEVICE', '0', '-genv', 'I_MPI_DAT_LIBRARY', 'libdat2.so', '-genv', 'I_MPI_NETMASK', '10.143.0.0/255.255.0.0', '-genv', 'I_MPI_PIN', '1', '-genv', 'I_MPI_FALLBACK', 'disable', '-genv', 'I_MPI_FABRICS', 'shm:dapl', '-genv', 'I_MPI_DAPL_SCALABLE_PROGRESS', '0', '-np', '9', '-envlist', 'LD_LIBRARY_PATH,PATH,PYTHONPATH,I_MPI_HYDRA_TOPOLIB,I_MPI_ROOT,I_MPI_TMPDIR,FI_PROVIDER_PATH,MKL_EXAMPLES,OMP_NUM_THREADS', 'fds', 'PretrelC2.fds'] |
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