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December 15, 2021 22:42
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(partial) EasyBuild log for failed build of /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb (PR(s) #14572)
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== 2021-12-15 23:42:09,378 easyblock.py:303 INFO This is EasyBuild 4.5.2.dev0 (framework: 4.5.2.dev0, easyblocks: 4.5.2.dev0) on host node3408.kirlia.os. | |
== 2021-12-15 23:42:09,378 easyblock.py:309 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py) | |
== 2021-12-15 23:42:09,378 easyblock.py:947 INFO Build dir set to /dev/shm/build/leidenalg/0.8.8/foss-2021b | |
== 2021-12-15 23:42:09,378 config.py:638 DEBUG software install path as specified by 'installpath' and 'subdir_software': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software | |
== 2021-12-15 23:42:09,378 easyconfig.py:2637 DEBUG Determining software installation subdir for leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,378 easyconfig.py:2640 DEBUG Using fixed naming software installation subdir: leidenalg/0.8.8-foss-2021b | |
== 2021-12-15 23:42:09,378 easyblock.py:1004 INFO Software install dir set to /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b | |
== 2021-12-15 23:42:09,379 config.py:638 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules | |
== 2021-12-15 23:42:09,379 easyblock.py:1009 INFO Module install dir set to /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all | |
== 2021-12-15 23:42:09,379 easyblock.py:278 INFO Init completed for application name leidenalg version 0.8.8 | |
== 2021-12-15 23:42:09,379 pythonbundle.py:74 INFO Detection of downloaded extension dependencies is enabled | |
== 2021-12-15 23:42:09,379 pythonbundle.py:78 INFO exts_default_options: {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/l/leidenalg'], 'options': {}} | |
== 2021-12-15 23:42:09,379 easyblock.py:3975 INFO Obtained application instance of for leidenalg (easyblock: PythonBundle) | |
== 2021-12-15 23:42:09,379 easyblock.py:3988 DEBUG Skip set to False | |
== 2021-12-15 23:42:09,379 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,379 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,380 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,380 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,380 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,380 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,380 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,380 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', github_account='leidenalg', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,381 one.py:145 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
== 2021-12-15 23:42:09,381 one.py:524 DEBUG Extracted comments: | |
{'above': {}, | |
'header': [], | |
'inline': {}, | |
'iterabove': {'local_preinstallopts': {'local_preinstallopts += "sed -i \'s/python-igraph >=/igraph >=/g\' setup.py && "': ['# ' | |
"'python-igraph' " | |
'dependency ' | |
'was ' | |
'renamed ' | |
'to ' | |
"'igraph'"]}, | |
'sanity_check_commands': {' "cd %(builddir)s/leidenalg/leidenalg-%(version)s && python setup.py test --use-pkg-config",': ['# ' | |
'tests ' | |
'require ' | |
'that ' | |
"'leidenalg' " | |
'Python ' | |
'module ' | |
'is ' | |
'available,', | |
'# ' | |
'so ' | |
'needs ' | |
'to ' | |
'be ' | |
'run ' | |
'after ' | |
'installation']}}, | |
'iterinline': {}, | |
'tail': []} | |
== 2021-12-15 23:42:09,381 one.py:175 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2021-12-15 23:42:09,382 easyconfig.py:1252 DEBUG Dumped easyconfig: easyblock = 'PythonBundle' | |
name = 'leidenalg' | |
version = '0.8.8' | |
homepage = 'https://github.com/vtraag/leidenalg' | |
description = """Implementation of the Leiden algorithm for various quality | |
functions to be used with igraph in Python.""" | |
toolchain = {'name': 'foss', 'version': '2021b'} | |
builddependencies = [ | |
('pkgconf', '1.8.0', '', ('GCCcore', '11.2.0')), | |
('PyYAML', '5.4.1', '', ('GCCcore', '11.2.0')), | |
('Bison', '3.7.6', '', ('GCCcore', '11.2.0')), | |
('libtool', '2.4.6', '', ('GCCcore', '11.2.0')), | |
('flex', '2.6.4', '', ('GCCcore', '11.2.0')), | |
('CMake', '3.21.1', '', ('GCCcore', '11.2.0')), | |
] | |
dependencies = [ | |
('Python', '3.9.6', '', ('GCCcore', '11.2.0')), | |
('igraph', '0.9.5'), | |
('python-igraph', '0.9.8'), | |
] | |
exts_defaultclass = 'PythonPackage' | |
exts_filter = ( | |
'python -c "import %(ext_name)s"', | |
'', | |
) | |
sanity_pip_check = True | |
use_pip = True | |
exts_default_options = { | |
'buildcmd': None, | |
'check_ldshared': None, | |
'download_dep_fail': True, | |
'install_src': None, | |
'install_target': 'install', | |
'options': {}, | |
'pip_ignore_installed': True, | |
'pip_no_index': None, | |
'req_py_majver': None, | |
'req_py_minver': None, | |
'runtest': True, | |
'sanity_pip_check': True, | |
'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], | |
'unpack_sources': None, | |
'unversioned_packages': [], | |
'use_pip': True, | |
'use_pip_editable': False, | |
'use_pip_extras': None, | |
'use_pip_for_deps': False, | |
'use_pip_requirement': False, | |
'zipped_egg': False, | |
} | |
exts_list = [ | |
('ddt', '1.4.4', {'checksums': ['8de39a69730442dc835e4d33f9d2e33043ff91151c8d18086959ee556febb9f8']}), | |
('leidenalg', '0.8.8', {'preinstallopts': "python setup.py build --use-pkg-config && sed -i 's/python-igraph >=/igraph >=/g' setup.py && ", 'checksums': ['12750f66d1f0c84ed4484fa895a9d5a163e2f4b611edb12ad09cc66120654df3']}), | |
] | |
sanity_check_commands = [ | |
# tests require that '%(name)s' Python module is available, | |
# so needs to be run after installation | |
"cd %(builddir)s/%(name)s/%(name)s-%(version)s && python setup.py test --use-pkg-config", | |
"python -c 'import %(name)s; import igraph as ig; %(name)s.find_partition(ig.Graph.Erdos_Renyi(100, 0.1), %(name)s.ModularityVertexPartition)'", | |
] | |
moduleclass = 'chem' | |
== 2021-12-15 23:42:09,382 filetools.py:1875 INFO Creating directory /tmp/eb-8bqc1uyv/reprod_20211215234209_41321 (parents: True, set_gid: False, sticky: False) | |
== 2021-12-15 23:42:09,383 easyblock.py:4229 INFO Dumped easyconfig instance to /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,383 filetools.py:1875 INFO Creating directory /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2021-12-15 23:42:09,383 filetools.py:2388 INFO /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyblocks/easybuild/easyblocks/generic/bundle.py copied to /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks/bundle.py | |
== 2021-12-15 23:42:09,383 easyblock.py:4209 INFO Dumped easyblock bundle.py required for reproduction to /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks | |
== 2021-12-15 23:42:09,383 filetools.py:1894 DEBUG Not creating existing path /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks | |
== 2021-12-15 23:42:09,384 filetools.py:2388 INFO /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyblocks/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks/pythonbundle.py | |
== 2021-12-15 23:42:09,384 easyblock.py:4209 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/eb-8bqc1uyv/reprod_20211215234209_41321/easyblocks | |
== 2021-12-15 23:42:09,385 easyblock.py:2077 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2021-12-15 23:42:09,385 build_log.py:265 INFO building and installing leidenalg/0.8.8-foss-2021b... | |
== 2021-12-15 23:42:09,385 config.py:638 DEBUG software install path as specified by 'installpath' and 'subdir_software': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software | |
== 2021-12-15 23:42:09,385 filetools.py:1968 INFO Lock /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock does not exist | |
== 2021-12-15 23:42:09,385 config.py:638 DEBUG software install path as specified by 'installpath' and 'subdir_software': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software | |
== 2021-12-15 23:42:09,385 filetools.py:1909 INFO Creating lock at /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock... | |
== 2021-12-15 23:42:09,385 filetools.py:1875 INFO Creating directory /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock (parents: True, set_gid: False, sticky: False) | |
== 2021-12-15 23:42:09,386 filetools.py:1918 INFO Lock created: /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock | |
== 2021-12-15 23:42:09,386 easyblock.py:3693 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-12-15 23:42:09,386 build_log.py:265 INFO fetching files... | |
== 2021-12-15 23:42:09,386 easyblock.py:3701 INFO Starting fetch step | |
== 2021-12-15 23:42:09,386 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,386 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,386 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,386 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,386 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,387 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,387 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,387 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,387 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,387 easyblock.py:3709 INFO Running method fetch_step part of step fetch | |
== 2021-12-15 23:42:09,387 easyblock.py:2199 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2021-12-15 23:42:09,387 easyblock.py:2227 INFO no sources provided | |
== 2021-12-15 23:42:09,387 easyblock.py:2242 INFO no patches provided | |
== 2021-12-15 23:42:09,387 templates.py:189 DEBUG config: {'name': 'ddt', 'version': '1.4.4', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['8de39a69730442dc835e4d33f9d2e33043ff91151c8d18086959ee556febb9f8']}, 'easyblock': None} | |
== 2021-12-15 23:42:09,387 templates.py:216 DEBUG version found in easyconfig is 1.4.4 | |
== 2021-12-15 23:42:09,387 templates.py:318 DEBUG name: name, config: ddt | |
== 2021-12-15 23:42:09,387 templates.py:318 DEBUG name: version, config: 1.4.4 | |
== 2021-12-15 23:42:09,388 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-framework/eb | |
== 2021-12-15 23:42:09,388 tools.py:287 INFO Not considering /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop (no easybuild/easyconfigs subdir found) | |
== 2021-12-15 23:42:09,388 tools.py:295 INFO Also considering installation prefix /kyukon/scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop (via resolved path to 'eb')... | |
== 2021-12-15 23:42:09,388 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8bqc1uyv/files_pr14572/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8bqc1uyv/fake_vsc_s5pjpu81/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:304 DEBUG Added /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyblocks/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-framework/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,389 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /user/gent/430/vsc43020/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,390 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,390 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,390 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /kyukon/scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,394 easyblock.py:771 INFO Found file ddt-1.4.4.tar.gz at /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/ddt-1.4.4.tar.gz | |
== 2021-12-15 23:42:09,394 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,403 easyblock.py:621 INFO md5 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/ddt-1.4.4.tar.gz: 6ce9b363798079b7d437a97ef09adb0f | |
== 2021-12-15 23:42:09,404 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,404 easyblock.py:621 INFO sha256 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/ddt-1.4.4.tar.gz: 8de39a69730442dc835e4d33f9d2e33043ff91151c8d18086959ee556febb9f8 | |
== 2021-12-15 23:42:09,404 easyblock.py:624 DEBUG Verifying checksums for extension source... | |
== 2021-12-15 23:42:09,404 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,404 filetools.py:1304 DEBUG Computed sha256 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/ddt-1.4.4.tar.gz: 8de39a69730442dc835e4d33f9d2e33043ff91151c8d18086959ee556febb9f8 (correct checksum: 8de39a69730442dc835e4d33f9d2e33043ff91151c8d18086959ee556febb9f8) | |
== 2021-12-15 23:42:09,404 easyblock.py:627 INFO Checksum for extension source ddt-1.4.4.tar.gz verified | |
== 2021-12-15 23:42:09,404 easyblock.py:480 INFO Fetched extension patches: [] | |
== 2021-12-15 23:42:09,404 easyblock.py:668 DEBUG No patches found for extension ddt. | |
== 2021-12-15 23:42:09,404 templates.py:189 DEBUG config: {'name': 'leidenalg', 'version': '0.8.8', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'req_py_majver': None, 'req_py_minver': None, 'sanity_pip_check': True, 'runtest': True, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'preinstallopts': "python setup.py build --use-pkg-config && sed -i 's/python-igraph >=/igraph >=/g' setup.py && ", 'checksums': ['12750f66d1f0c84ed4484fa895a9d5a163e2f4b611edb12ad09cc66120654df3']}, 'easyblock': None} | |
== 2021-12-15 23:42:09,405 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,405 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,405 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,405 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-framework/eb | |
== 2021-12-15 23:42:09,405 tools.py:287 INFO Not considering /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop (no easybuild/easyconfigs subdir found) | |
== 2021-12-15 23:42:09,405 tools.py:295 INFO Also considering installation prefix /kyukon/scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop (via resolved path to 'eb')... | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8bqc1uyv/files_pr14572/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-8bqc1uyv/fake_vsc_s5pjpu81/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:304 DEBUG Added /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2021-12-15 23:42:09,405 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-easyblocks/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild-framework/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python36.zip/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/lib-dynload/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /user/gent/430/vsc43020/.local/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.6/site-packages/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /kyukon/scratch/gent/vo/000/gvo00002/vsc43020/easybuild_develop/easybuild/easyconfigs | |
== 2021-12-15 23:42:09,407 easyblock.py:771 INFO Found file leidenalg-0.8.8.tar.gz at /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/leidenalg-0.8.8.tar.gz | |
== 2021-12-15 23:42:09,407 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,442 easyblock.py:621 INFO md5 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/leidenalg-0.8.8.tar.gz: d42e7fbb9054c400bd3be1e65e121d4d | |
== 2021-12-15 23:42:09,443 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,453 easyblock.py:621 INFO sha256 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/leidenalg-0.8.8.tar.gz: 12750f66d1f0c84ed4484fa895a9d5a163e2f4b611edb12ad09cc66120654df3 | |
== 2021-12-15 23:42:09,453 easyblock.py:624 DEBUG Verifying checksums for extension source... | |
== 2021-12-15 23:42:09,453 filetools.py:1231 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-12-15 23:42:09,464 filetools.py:1304 DEBUG Computed sha256 checksum for /scratch/gent/vo/000/gvo00002/vsc43020/sources/l/leidenalg/extensions/leidenalg-0.8.8.tar.gz: 12750f66d1f0c84ed4484fa895a9d5a163e2f4b611edb12ad09cc66120654df3 (correct checksum: 12750f66d1f0c84ed4484fa895a9d5a163e2f4b611edb12ad09cc66120654df3) | |
== 2021-12-15 23:42:09,464 easyblock.py:627 INFO Checksum for extension source leidenalg-0.8.8.tar.gz verified | |
== 2021-12-15 23:42:09,464 easyblock.py:480 INFO Fetched extension patches: [] | |
== 2021-12-15 23:42:09,464 easyblock.py:668 DEBUG No patches found for extension leidenalg. | |
== 2021-12-15 23:42:09,464 easyconfig.py:2624 DEBUG Determining full module name for leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb (force_visible: False) | |
== 2021-12-15 23:42:09,464 easyconfig.py:2601 DEBUG No alternative software name specified to determine module name with | |
== 2021-12-15 23:42:09,464 utilities.py:102 DEBUG Module name leidenalg/0.8.8-foss-2021b validated | |
== 2021-12-15 23:42:09,464 easyconfig.py:2632 DEBUG Obtained valid full module name leidenalg/0.8.8-foss-2021b | |
== 2021-12-15 23:42:09,464 config.py:638 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules | |
== 2021-12-15 23:42:09,464 easyblock.py:2287 INFO Checking dirs that need to be created: ['/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', '/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all/leidenalg', '/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/chem/leidenalg'] | |
== 2021-12-15 23:42:09,464 filetools.py:1894 DEBUG Not creating existing path /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b | |
== 2021-12-15 23:42:09,465 filetools.py:1894 DEBUG Not creating existing path /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all/leidenalg | |
== 2021-12-15 23:42:09,466 filetools.py:1894 DEBUG Not creating existing path /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/chem/leidenalg | |
== 2021-12-15 23:42:09,466 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-12-15 23:42:09,466 easyblock.py:3693 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-12-15 23:42:09,466 build_log.py:265 INFO creating build dir, resetting environment... | |
== 2021-12-15 23:42:09,466 easyblock.py:3701 INFO Starting ready step | |
== 2021-12-15 23:42:09,466 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,466 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,466 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,466 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,466 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,467 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,467 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,467 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,467 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,467 easyblock.py:3709 INFO Running method check_readiness_step part of step ready | |
== 2021-12-15 23:42:09,467 easyblock.py:2087 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2021-12-15 23:42:09,467 easyblock.py:2096 INFO Setting parallelism: 8 | |
== 2021-12-15 23:42:09,467 modules.py:812 DEBUG Current MODULEPATH: /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc | |
== 2021-12-15 23:42:09,468 modules.py:826 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /kyukon/home/gent/430/vsc43020 | |
== 2021-12-15 23:42:09,505 modules.py:833 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPTg2NDAwLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXtbImNsdXN0ZXIiXT0iY2x1c3RlciIsfSxtVD17Y2x1c3Rlcj17WyJmbiJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYy9jbHVzdGVyL2tpcmxpYS5sdWEiLFsiZnVsbE5hbWUiXT0iY2x1c3Rlci9raXJsaWEiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17bG1vZD17WyJzdGlja3kiXT0xLH0sfSxbInN0YWNrRGVwdGgiXT0wLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJjbHVzdGVyL2tpcmxpYSIsfSx9LG1wYXRoQT17Ii9zY3JhdGNoL2dlbnQvdm8vMDAwL2d2bzAwMDAyL3ZzYzQzMDIwL0NPNy9jYXNj"; | |
os.environ["_ModuleTable002_"] = "YWRlbGFrZS1pYi9tb2R1bGVzL2FsbCIsIi9hcHBzL2dlbnQvQ083L2Nhc2NhZGVsYWtlLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: cluster/kirlia | |
== 2021-12-15 23:42:09,505 modules.py:1375 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2021-12-15 23:42:09,506 easyblock.py:2148 WARNING Loaded modules detected: ['cluster/kirlia'] | |
== 2021-12-15 23:42:09,506 easyblock.py:3709 INFO Running method make_builddir part of step ready | |
== 2021-12-15 23:42:09,506 easyblock.py:957 DEBUG Creating the build directory /dev/shm/build/leidenalg/0.8.8/foss-2021b (cleanup: True) | |
== 2021-12-15 23:42:09,506 filetools.py:1875 INFO Creating directory /dev/shm/build/leidenalg/0.8.8/foss-2021b (parents: True, set_gid: False, sticky: False) | |
== 2021-12-15 23:42:09,506 easyblock.py:3709 INFO Running method reset_env part of step ready | |
== 2021-12-15 23:42:09,507 easyblock.py:3709 INFO Running method handle_iterate_opts part of step ready | |
== 2021-12-15 23:42:09,507 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,507 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,507 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,507 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,507 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,508 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,508 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,508 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,508 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-12-15 23:42:09,508 easyblock.py:3693 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-12-15 23:42:09,508 build_log.py:265 INFO unpacking... | |
== 2021-12-15 23:42:09,508 easyblock.py:3701 INFO Starting source step | |
== 2021-12-15 23:42:09,508 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,508 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,508 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,508 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,509 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,509 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,509 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,509 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,509 easyblock.py:3709 INFO Running method checksum_step part of step source | |
== 2021-12-15 23:42:09,509 easyblock.py:3709 INFO Running method extract_step part of step source | |
== 2021-12-15 23:42:09,509 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-12-15 23:42:09,509 easyblock.py:3693 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-12-15 23:42:09,509 build_log.py:265 INFO patching... | |
== 2021-12-15 23:42:09,510 easyblock.py:3701 INFO Starting patch step | |
== 2021-12-15 23:42:09,510 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,510 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,510 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,510 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,510 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,510 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,510 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,510 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,511 easyblock.py:3709 INFO Running method patch_step part of step patch | |
== 2021-12-15 23:42:09,511 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-12-15 23:42:09,511 easyblock.py:3693 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-12-15 23:42:09,511 build_log.py:265 INFO preparing... | |
== 2021-12-15 23:42:09,511 easyblock.py:3701 INFO Starting prepare step | |
== 2021-12-15 23:42:09,511 easyconfig.py:1686 INFO Generating template values... | |
== 2021-12-15 23:42:09,511 templates.py:189 DEBUG config: leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,511 templates.py:216 DEBUG version found in easyconfig is 0.8.8 | |
== 2021-12-15 23:42:09,511 systemtools.py:1147 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: name, config: leidenalg | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: version, config: 0.8.8 | |
== 2021-12-15 23:42:09,511 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-12-15 23:42:09,512 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-12-15 23:42:09,512 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2021-12-15 23:42:09,512 mpi.py:304 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2021-12-15 23:42:09,512 easyconfig.py:1705 INFO Template values: arch='x86_64', bitbucket_account='leidenalg', builddir='/dev/shm/build/leidenalg/0.8.8/foss-2021b', github_account='leidenalg', installdir='/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/leidenalg/0.8.8-foss-2021b', module_name='leidenalg/0.8.8-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='leidenalg', nameletter='l', nameletterlower='l', namelower='leidenalg', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='foss', toolchain_version='2021b', version='0.8.8', version_major='0', version_major_minor='0.8', version_minor='8', versionprefix='', versionsuffix='' | |
== 2021-12-15 23:42:09,512 easyblock.py:3709 INFO Running method prepare_step part of step prepare | |
== 2021-12-15 23:42:09,512 easyconfig.py:2692 DEBUG Determining initial module paths for leidenalg EasyConfig @ /tmp/eb-8bqc1uyv/files_pr14572/l/leidenalg/leidenalg-0.8.8-foss-2021b.eb | |
== 2021-12-15 23:42:09,512 easyconfig.py:2694 DEBUG Obtained initial module paths: [] | |
== 2021-12-15 23:42:09,512 easyconfig.py:1131 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'short_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'name': 'pkgconf', 'version': '1.8.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'short_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'name': 'PyYAML', 'version': '5.4.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'short_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'name': 'Bison', 'version': '3.7.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'short_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'name': 'libtool', 'version': '2.4.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'short_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'short_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'name': 'CMake', 'version': '3.21.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'igraph/0.9.5-foss-2021b', 'short_mod_name': 'igraph/0.9.5-foss-2021b', 'name': 'igraph', 'version': '0.9.5', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'python-igraph/0.9.8-foss-2021b', 'short_mod_name': 'python-igraph/0.9.8-foss-2021b', 'name': 'python-igraph', 'version': '0.9.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-12-15 23:42:09,513 easyconfig.py:1134 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'short_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'name': 'pkgconf', 'version': '1.8.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'short_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'name': 'PyYAML', 'version': '5.4.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'short_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'name': 'Bison', 'version': '3.7.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'short_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'name': 'libtool', 'version': '2.4.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'short_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'short_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'name': 'CMake', 'version': '3.21.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'igraph/0.9.5-foss-2021b', 'short_mod_name': 'igraph/0.9.5-foss-2021b', 'name': 'igraph', 'version': '0.9.5', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'python-igraph/0.9.8-foss-2021b', 'short_mod_name': 'python-igraph/0.9.8-foss-2021b', 'name': 'python-igraph', 'version': '0.9.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-12-15 23:42:09,513 toolchain.py:521 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'short_mod_name': 'pkgconf/1.8.0-GCCcore-11.2.0', 'name': 'pkgconf', 'version': '1.8.0', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'short_mod_name': 'PyYAML/5.4.1-GCCcore-11.2.0', 'name': 'PyYAML', 'version': '5.4.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'short_mod_name': 'Bison/3.7.6-GCCcore-11.2.0', 'name': 'Bison', 'version': '3.7.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'short_mod_name': 'libtool/2.4.6-GCCcore-11.2.0', 'name': 'libtool', 'version': '2.4.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'short_mod_name': 'flex/2.6.4-GCCcore-11.2.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'short_mod_name': 'CMake/3.21.1-GCCcore-11.2.0', 'name': 'CMake', 'version': '3.21.1', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'igraph/0.9.5-foss-2021b', 'short_mod_name': 'igraph/0.9.5-foss-2021b', 'name': 'igraph', 'version': '0.9.5', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'python-igraph/0.9.8-foss-2021b', 'short_mod_name': 'python-igraph/0.9.8-foss-2021b', 'name': 'python-igraph', 'version': '0.9.8', 'versionsuffix': '', 'toolchain': {'name': 'foss', 'version': '2021b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-12-15 23:42:09,513 toolchain.py:531 DEBUG _check_dependencies: MODULEPATH: /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc | |
== 2021-12-15 23:42:09,513 modules.py:490 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['ABAQUS/2020', 'ABAQUS/2021-hotfix-2132', 'ABINIT/9.2.1-intel-2020a', 'ABINIT/9.4.1-intel-2020b', 'ABRA2/2.23-GCC-10.2.0', 'ABRA2/2.23-GCC-9.3.0', 'ABRicate/0.9.9-gompi-2019b', 'ABySS/2.1.5-foss-2019b', 'ANTs/2.3.2-foss-2019b-Python-3.7.4', 'ARAGORN/1.2.38-iccifort-2019.5.281', 'ARAGORN/1.2.41-foss-2021b', 'ASE/3.18.0-intel-2019a-Python-3.7.2', 'ASE/3.19.0-foss-2019b-Python-3.7.4', 'ASE/3.19.0-intel-2019b-Python-3.7.4', 'ASE/3.20.1-foss-2020b', 'ASE/3.20.1-intel-2020a-Python-3.8.2', 'ATK/2.34.1-GCCcore-8.3.0', 'ATK/2.36.0-GCCcore-10.2.0', 'ATK/2.36.0-GCCcore-10.3.0', 'AUGUSTUS/3.3.3-foss-2019b', 'AUGUSTUS/3.3.3-intel-2019b', 'AUGUSTUS/3.4.0-foss-2020b', 'AlphaFold/2.0.0-foss-2020b', 'Altair-EDEM/2021.2', 'AmberMini/16.16.0-intel-2020a', 'AmberTools/20-intel-2020a-Python-3.8.2', 'Anaconda3/2020.02', 'Anaconda3/2020.11', 'Archive-Zip/1.68-GCCcore-10.2.0', 'Arlequin/3.5.2.2-foss-2019b', 'Arrow/0.12.0-foss-2018b-Python-2.7.15', 'Arrow/0.12.0-intel-2018b-Python-2.7.15', 'Arrow/0.16.0-intel-2018b-Python-2.7.15', 'Arrow/0.16.0-intel-2019b-Python-3.7.4', 'Arrow/0.17.1-foss-2020a-Python-3.8.2', 'Arrow/0.17.1-intel-2020a-Python-3.8.2', 'Arrow/0.17.1-intel-2020b', 'Arrow/6.0.0-foss-2021a', 'Arrow/6.0.0-foss-2021b', 'ArviZ/0.11.1-intel-2020b', 'ArviZ/0.7.0-foss-2019b-Python-3.7.4', 'ArviZ/0.7.0-intel-2019b-Python-3.7.4', 'Aspera-CLI/3.9.6.1467.159c5b1', 'AutoGeneS/1.0.4-foss-2020b', 'AutoMap/1.0-foss-2019b-20200324', 'Autoconf/2.69', 'Autoconf/2.69-GCCcore-10.2.0', 'Autoconf/2.69-GCCcore-6.4.0', 'Autoconf/2.69-GCCcore-7.3.0', 'Autoconf/2.69-GCCcore-8.2.0', 'Autoconf/2.69-GCCcore-8.3.0', 'Autoconf/2.69-GCCcore-9.3.0', 'Autoconf/2.71-GCCcore-10.3.0', 'Autoconf/2.71-GCCcore-11.2.0', 'Automake/1.15', 'Automake/1.15.1-GCCcore-6.4.0', 'Automake/1.16.1-GCCcore-7.3.0', 'Automake/1.16.1-GCCcore-8.2.0', 'Automake/1.16.1-GCCcore-8.3.0', 'Automake/1.16.1-GCCcore-9.3.0', 'Automake/1.16.2-GCCcore-10.2.0', 'Automake/1.16.3-GCCcore-10.3.0', 'Automake/1.16.4-GCCcore-11.2.0', 'Autotools/20150215', 'Autotools/20170619-GCCcore-6.4.0', 'Autotools/20180311-GCCcore-7.3.0', 'Autotools/20180311-GCCcore-8.2.0', 'Autotools/20180311-GCCcore-8.3.0', 'Autotools/20180311-GCCcore-9.3.0', 'Autotools/20200321-GCCcore-10.2.0', 'Autotools/20210128-GCCcore-10.3.0', 'Autotools/20210726-GCCcore-11.2.0', 'BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16', 'BBMap/38.87-iccifort-2020.1.217', 'BCFtools/1.10.2-GCC-8.3.0', 'BCFtools/1.10.2-foss-2019b', 'BCFtools/1.10.2-iccifort-2019.5.281', 'BCFtools/1.11-GCC-10.2.0', 'BCFtools/1.12-GCC-10.2.0', 'BCFtools/1.9-foss-2018b', 'BEDTools/2.19.1-GCC-8.3.0', 'BEDTools/2.28.0-GCC-8.2.0-2.31.1', 'BEDTools/2.29.2-GCC-8.3.0', 'BEDTools/2.29.2-GCC-9.3.0', 'BEDTools/2.30.0-GCC-10.2.0', 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'spaln/2.4.03-iccifort-2019.5.281', 'sparsehash/2.0.3-GCCcore-8.3.0', 'spatialreg/1.1-5-foss-2019b-R-3.6.2', 'spatialreg/1.1-8-foss-2021a-R-4.1.0', 'speech_tools/2.5.0-GCCcore-9.3.0', 'spglib-python/1.14.1.post0-intel-2019a-Python-3.7.2', 'spglib-python/1.16.0-foss-2020b', 'spglib-python/1.16.0-intel-2020a-Python-3.8.2', 'spoa/3.0.1-GCC-7.3.0-2.30', 'spoa/3.4.0-GCC-10.2.0', 'spoa/4.0.0-GCC-8.3.0', 'spoa/4.0.7-GCC-10.2.0', 'stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2', 'statsmodels/0.11.0-foss-2019b-Python-3.7.4', 'statsmodels/0.11.0-intel-2019b-Python-3.7.4', 'statsmodels/0.11.1-intel-2020a-Python-3.8.2', 'statsmodels/0.12.1-foss-2020b', 'statsmodels/0.12.1-intel-2020b', 'statsmodels/0.12.2-foss-2021a', 'statsmodels/0.13.1-foss-2021b', 'statsmodels/0.13.1-intel-2021b', 'suave/20160529-foss-2020b', 'swissknife/1.80-GCCcore-8.3.0', 'sympy/1.5.1-foss-2019b-Python-3.7.4', 'sympy/1.6.2-foss-2020a-Python-3.8.2', 'sympy/1.7.1-foss-2020b', 'tMAE/1.0.0-foss-2020b-R-4.0.3', 'tabixpp/1.1.0-GCC-10.2.0', 'taxator-tk/1.3.3-GCC-10.2.0', 'taxator-tk/1.3.3-gompi-2019a', 'taxator-tk/1.3.3-gompi-2020b', 'tbb/2019_U4-GCCcore-8.2.0', 'tbb/2019_U9-GCCcore-8.3.0', 'tbb/2020.1-GCCcore-9.3.0', 'tbb/2020.3-GCCcore-10.2.0', 'tbb/2020.3-GCCcore-10.3.0', 'tcsh/6.22.02-GCCcore-8.3.0', 'tcsh/6.22.03-GCCcore-10.2.0', 'tensorboardX/2.2-foss-2020b-PyTorch-1.7.1', 'texinfo/6.7-GCCcore-9.3.0', 'time/1.9-GCCcore-10.2.0', 'time/1.9-GCCcore-8.3.0', 'torchvision/0.7.0-foss-2019b-Python-3.7.4-PyTorch-1.6.0', 'torchvision/0.8.2-foss-2020b-PyTorch-1.7.1', 'tqdm/4.41.1-GCCcore-8.3.0', 'tqdm/4.47.0-GCCcore-9.3.0', 'tqdm/4.56.2-GCCcore-10.2.0', 'tqdm/4.60.0-GCCcore-10.2.0', 'tqdm/4.61.2-GCCcore-10.3.0', 'tqdm/4.62.3-GCCcore-11.2.0', 'treatSens/3.0-20201002-foss-2020a-R-4.0.0', 'tsne/0.1.8-intel-2019b-Python-2.7.16', 'typing-extensions/3.10.0.0-GCCcore-10.3.0', 'typing-extensions/3.7.4.3-GCCcore-10.2.0', 'umi4cPackage/20200116-foss-2020a-R-4.0.0', 'unimap/0.1-GCCcore-10.2.0', 'util-linux/2.32-GCCcore-7.3.0', 'util-linux/2.33-GCCcore-8.2.0', 'util-linux/2.34-GCCcore-8.3.0', 'util-linux/2.35-GCCcore-9.3.0', 'util-linux/2.36-GCCcore-10.2.0', 'util-linux/2.36-GCCcore-10.3.0', 'util-linux/2.37-GCCcore-11.2.0', 'vbz_compression/1.0.1-gompi-2020b', 'vcflib/1.0.2-GCC-10.2.0', 'velocyto/0.17.17-intel-2020a-Python-3.8.2', 'vsc-mympirun/5.0.1', 'vsc-mympirun/5.1.0', 'vsc-mympirun/5.2.0', 'vsc-mympirun/5.2.2', 'vsc-mympirun/5.2.3', 'vsc-mympirun/5.2.4', 'vsc-mympirun/5.2.5', 'vsc-mympirun/5.2.6', 'vt/0.57721-GCC-10.2.0', 'waves2Foam/20200703-foss-2019b', 'wget/1.20.3-GCCcore-10.2.0', 'wget/1.20.3-GCCcore-9.3.0', 'wget/1.21.1-GCCcore-10.3.0', 'wgsim/20111017-GCC-10.2.0', 'wheel/0.31.1-foss-2018b-Python-3.6.6', 'worker/1.6.11-intel-2019b', 'worker/1.6.12-foss-2018b', 'worker/1.6.12-foss-2019a', 'worker/1.6.12-foss-2021b', 'x264/20190925-GCCcore-8.3.0', 'x264/20191217-GCCcore-9.3.0', 'x264/20201026-GCCcore-10.2.0', 'x264/20210414-GCCcore-10.3.0', 'x265/3.2-GCCcore-8.3.0', 'x265/3.3-GCCcore-10.2.0', 'x265/3.3-GCCcore-9.3.0', 'x265/3.5-GCCcore-10.3.0', 'xESMF/0.3.0-intel-2020b', 'xarray/0.15.1-foss-2019b-Python-3.7.4', 'xarray/0.15.1-intel-2019b-Python-3.7.4', 'xarray/0.16.2-intel-2020b', 'xorg-macros/1.19.1-GCCcore-6.4.0', 'xorg-macros/1.19.2-GCCcore-10.2.0', 'xorg-macros/1.19.2-GCCcore-7.3.0', 'xorg-macros/1.19.2-GCCcore-8.2.0', 'xorg-macros/1.19.2-GCCcore-8.3.0', 'xorg-macros/1.19.2-GCCcore-9.3.0', 'xorg-macros/1.19.3-GCCcore-10.3.0', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xprop/1.2.4-GCCcore-9.3.0', 'xprop/1.2.5-GCCcore-10.2.0', 'xproto/7.0.31-GCCcore-8.3.0', 'yaff/1.6.0-foss-2019b-Python-3.7.4', 'yaff/1.6.0-intel-2019b-Python-3.7.4', 'yaff/1.6.0-intel-2020a-Python-3.8.2', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-10.2.0', 'zlib/1.2.11-GCCcore-10.3.0', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.11-GCCcore-6.4.0', 'zlib/1.2.11-GCCcore-7.3.0', 'zlib/1.2.11-GCCcore-8.2.0', 'zlib/1.2.11-GCCcore-8.3.0', 'zlib/1.2.11-GCCcore-9.3.0', 'zlib/1.2.8', 'zstd/1.4.4-GCCcore-9.3.0', 'zstd/1.4.5-GCCcore-10.2.0', 'zstd/1.4.9-GCCcore-10.3.0', 'zstd/1.5.0-GCCcore-11.2.0'] | |
== 2021-12-15 23:42:09,515 modules.py:626 INFO Checking whether pkgconf/1.8.0-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,515 modules.py:631 INFO Module pkgconf/1.8.0-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,515 modules.py:654 INFO Result for existence check of pkgconf/1.8.0-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,515 modules.py:626 INFO Checking whether PyYAML/5.4.1-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,515 modules.py:631 INFO Module PyYAML/5.4.1-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,515 modules.py:654 INFO Result for existence check of PyYAML/5.4.1-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,515 modules.py:626 INFO Checking whether Bison/3.7.6-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module Bison/3.7.6-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of Bison/3.7.6-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,516 modules.py:626 INFO Checking whether libtool/2.4.6-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module libtool/2.4.6-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of libtool/2.4.6-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,516 modules.py:626 INFO Checking whether flex/2.6.4-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module flex/2.6.4-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of flex/2.6.4-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,516 modules.py:626 INFO Checking whether CMake/3.21.1-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module CMake/3.21.1-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of CMake/3.21.1-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,516 modules.py:626 INFO Checking whether Python/3.9.6-GCCcore-11.2.0 exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module Python/3.9.6-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of Python/3.9.6-GCCcore-11.2.0 module: True | |
== 2021-12-15 23:42:09,516 modules.py:626 INFO Checking whether igraph/0.9.5-foss-2021b exists... | |
== 2021-12-15 23:42:09,516 modules.py:631 INFO Module igraph/0.9.5-foss-2021b exists (found in list of available modules) | |
== 2021-12-15 23:42:09,516 modules.py:654 INFO Result for existence check of igraph/0.9.5-foss-2021b module: True | |
== 2021-12-15 23:42:09,517 modules.py:626 INFO Checking whether python-igraph/0.9.8-foss-2021b exists... | |
== 2021-12-15 23:42:09,517 modules.py:634 INFO Module python-igraph/0.9.8-foss-2021b not found in list of available modules, checking via 'module show'... | |
== 2021-12-15 23:42:09,517 modules.py:570 DEBUG Checking whether python-igraph/0.9.8-foss-2021b exists based on output of 'module show' | |
== 2021-12-15 23:42:09,517 modules.py:812 DEBUG Current MODULEPATH: /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc | |
== 2021-12-15 23:42:09,517 modules.py:826 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show python-igraph/0.9.8-foss-2021b' from /kyukon/home/gent/430/vsc43020 | |
== 2021-12-15 23:42:09,868 modules.py:833 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show python-igraph/0.9.8-foss-2021b': stdout: import os | |
os.environ["MODULEPATH"] = "/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "YWRlbGFrZS1pYi9tb2R1bGVzL2FsbCIsIi9hcHBzL2dlbnQvQ083L2Nhc2NhZGVsYWtlLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: | |
== 2021-12-15 23:42:09,868 modules.py:721 DEBUG Cached result for 'module show python-igraph/0.9.8-foss-2021b' with key '('MODULEPATH=/scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/modules/all:/apps/gent/CO7/cascadelake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'python-igraph/0.9.8-foss-2021b')': | |
== 2021-12-15 23:42:09,869 modules.py:580 DEBUG Checking line '' to determine whether python-igraph/0.9.8-foss-2021b exists... | |
== 2021-12-15 23:42:09,869 modules.py:584 DEBUG Treating line '' as whitespace, so skipping it | |
== 2021-12-15 23:42:09,869 modules.py:647 INFO Module python-igraph/0.9.8-foss-2021b not found via module avail/show, checking whether it is a wrapper | |
== 2021-12-15 23:42:09,869 modules.py:654 INFO Result for existence check of python-igraph/0.9.8-foss-2021b module: False | |
== 2021-12-15 23:42:09,870 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): python-igraph/0.9.8-foss-2021b (at easybuild/tools/toolchain/toolchain.py:557 in _check_dependencies) | |
== 2021-12-15 23:42:09,870 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-12-15 23:42:09,871 config.py:638 DEBUG software install path as specified by 'installpath' and 'subdir_software': /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software | |
== 2021-12-15 23:42:09,871 filetools.py:1976 INFO Removing lock /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock... | |
== 2021-12-15 23:42:09,871 filetools.py:380 INFO Path /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock successfully removed. | |
== 2021-12-15 23:42:09,871 filetools.py:1980 INFO Lock removed: /scratch/gent/vo/000/gvo00002/vsc43020/CO7/cascadelake-ib/software/.locks/_scratch_gent_vo_000_gvo00002_vsc43020_CO7_cascadelake-ib_software_leidenalg_0.8.8-foss-2021b.lock | |
== 2021-12-15 23:42:09,871 easyblock.py:4032 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): python-igraph/0.9.8-foss-2021b | |
== 2021-12-15 23:42:09,871 easyblock.py:318 INFO Closing log for application name leidenalg version 0.8.8 |
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