Created
March 5, 2023 23:12
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Relative expression plot in python
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import pandas as pd | |
import seaborn as sns | |
import matplotlib.pyplot as plt | |
df = pd.read_excel("/Users/halflearned/Downloads/qPCR.xlsx") | |
# Rename expression column to something sensible | |
df = df.rename(columns={"2^(-ΔΔCq)": "expression"}) | |
# Create the column that will be our horizontal axis | |
df["group"] = df["Sample"].str.split("-", expand=True)[0] | |
df["group"] = df["group"].str.replace("+12", ".5", regex=False) | |
# Plot plot plot | |
with sns.plotting_context("paper", font_scale=1.2): | |
ax = sns.pointplot( | |
data=df, | |
hue="Type", | |
x="group", | |
y="expression", | |
capsize=.1, # size of the horizontal thing at the extremity of the error bars | |
markers=".", | |
palette=["k", "C0", "C1"], | |
) | |
ax.set_ylabel("Relative expression (NR2F2)") | |
ax.set_xlabel("Time points") | |
ax.legend(frameon=False) | |
sns.despine() | |
ax.get_figure().savefig("/Users/halflearned/Desktop/relative_expression.jpeg", dpi=600) |
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