velvet output

velvet

[0.000000] Reading FastQ file s_197_1_extracted_reads.fastq;
[392.937697] 24921054 sequences found
[392.937699] Done
[393.003596] Reading FastQ file s_197_2_extracted_reads.fastq;
[717.206876] 24921054 sequences found
[717.206878] Done
[717.206927] Reading read set file output_assemble//Sequences;
[726.800873] 49842108 sequences found
[784.617406] Done
[784.617411] 49842108 sequences in total.
[784.617456] Writing into roadmap file output_assemble//Roadmaps...
[806.532764] Inputting sequences...
[806.532770] Inputting sequence 0 / 49842108
[823.874450] Inputting sequence 1000000 / 49842108
[842.343128] Inputting sequence 2000000 / 49842108
[861.321772] Inputting sequence 3000000 / 49842108
[880.398301] Inputting sequence 4000000 / 49842108
[899.427874] Inputting sequence 5000000 / 49842108
[919.300075] Inputting sequence 6000000 / 49842108
[939.707018] Inputting sequence 7000000 / 49842108
[959.105485] Inputting sequence 8000000 / 49842108
[978.522803] Inputting sequence 9000000 / 49842108
[997.907399] Inputting sequence 10000000 / 49842108
[1017.365101] Inputting sequence 11000000 / 49842108
[1036.821478] Inputting sequence 12000000 / 49842108
[1056.311334] Inputting sequence 13000000 / 49842108
[1075.709315] Inputting sequence 14000000 / 49842108
[1095.075730] Inputting sequence 15000000 / 49842108
[1114.729375] Inputting sequence 16000000 / 49842108
[1134.482117] Inputting sequence 17000000 / 49842108
[1154.080733] Inputting sequence 18000000 / 49842108
[1173.637796] Inputting sequence 19000000 / 49842108
[1193.668189] Inputting sequence 20000000 / 49842108
[1213.289031] Inputting sequence 21000000 / 49842108
[1233.805350] Inputting sequence 22000000 / 49842108
[1253.443675] Inputting sequence 23000000 / 49842108
[1273.229556] Inputting sequence 24000000 / 49842108
[1292.982002] Inputting sequence 25000000 / 49842108
[1312.673009] Inputting sequence 26000000 / 49842108
[1332.263366] Inputting sequence 27000000 / 49842108
[1351.952710] Inputting sequence 28000000 / 49842108
[1371.623630] Inputting sequence 29000000 / 49842108
[1391.437494] Inputting sequence 30000000 / 49842108
[1411.211681] Inputting sequence 31000000 / 49842108
[1430.860906] Inputting sequence 32000000 / 49842108
[1450.396178] Inputting sequence 33000000 / 49842108
[1470.115897] Inputting sequence 34000000 / 49842108
[1489.922754] Inputting sequence 35000000 / 49842108
[1509.623457] Inputting sequence 36000000 / 49842108
[1529.843192] Inputting sequence 37000000 / 49842108
[1549.500619] Inputting sequence 38000000 / 49842108
[1569.482808] Inputting sequence 39000000 / 49842108
[1589.253430] Inputting sequence 40000000 / 49842108
[1608.903761] Inputting sequence 41000000 / 49842108
[1628.638809] Inputting sequence 42000000 / 49842108
[1648.118726] Inputting sequence 43000000 / 49842108
[1667.563406] Inputting sequence 44000000 / 49842108
[1686.863773] Inputting sequence 45000000 / 49842108
[1706.054296] Inputting sequence 46000000 / 49842108
[1725.784332] Inputting sequence 47000000 / 49842108
[1745.357897] Inputting sequence 48000000 / 49842108
[1765.078038] Inputting sequence 49000000 / 49842108
[1782.079509]  === Sequences loaded in 975.549289 s
[1782.079627] Done inputting sequences
[1782.079629] Destroying splay table
[1782.517327] Splay table destroyed
[0.000000] Reading roadmap file output_assemble//Roadmaps
[254.945166] 49842108 roadmaps read
[254.969191] Creating insertion markers
[321.874046] Ordering insertion markers
[799.401269] Counting preNodes
[850.527175] 10841406 preNodes counted, creating them now
[903.732466] Sequence 1000000 / 49842108
[907.850174] Sequence 2000000 / 49842108
[911.124929] Sequence 3000000 / 49842108
[914.101136] Sequence 4000000 / 49842108
[916.923487] Sequence 5000000 / 49842108
[919.666396] Sequence 6000000 / 49842108
[922.352760] Sequence 7000000 / 49842108
[925.013055] Sequence 8000000 / 49842108
[927.649740] Sequence 9000000 / 49842108
[930.260361] Sequence 10000000 / 49842108
[932.855958] Sequence 11000000 / 49842108
[935.445074] Sequence 12000000 / 49842108
[938.034545] Sequence 13000000 / 49842108
[940.623289] Sequence 14000000 / 49842108
[943.195231] Sequence 15000000 / 49842108
[945.768354] Sequence 16000000 / 49842108
[948.335159] Sequence 17000000 / 49842108
[950.894112] Sequence 18000000 / 49842108
[953.448007] Sequence 19000000 / 49842108
[956.006183] Sequence 20000000 / 49842108
[958.559709] Sequence 21000000 / 49842108
[961.120646] Sequence 22000000 / 49842108
[963.674844] Sequence 23000000 / 49842108
[966.228614] Sequence 24000000 / 49842108
[968.777760] Sequence 25000000 / 49842108
[971.326979] Sequence 26000000 / 49842108
[973.861874] Sequence 27000000 / 49842108
[976.393287] Sequence 28000000 / 49842108
[978.929019] Sequence 29000000 / 49842108
[981.463311] Sequence 30000000 / 49842108
[983.981011] Sequence 31000000 / 49842108
[986.505032] Sequence 32000000 / 49842108
[989.037494] Sequence 33000000 / 49842108
[991.565474] Sequence 34000000 / 49842108
[994.090481] Sequence 35000000 / 49842108
[996.610400] Sequence 36000000 / 49842108
[999.136033] Sequence 37000000 / 49842108
[1001.652859] Sequence 38000000 / 49842108
[1004.174488] Sequence 39000000 / 49842108
[1006.693627] Sequence 40000000 / 49842108
[1009.217420] Sequence 41000000 / 49842108
[1011.732362] Sequence 42000000 / 49842108
[1014.246506] Sequence 43000000 / 49842108
[1016.763035] Sequence 44000000 / 49842108
[1019.271731] Sequence 45000000 / 49842108
[1021.784098] Sequence 46000000 / 49842108
[1024.312693] Sequence 47000000 / 49842108
[1026.832574] Sequence 48000000 / 49842108
[1029.354188] Sequence 49000000 / 49842108
[1031.479102] Adjusting marker info...
[1091.250934] Connecting preNodes
[1099.593652] Connecting 1000000 / 49842108
[1110.696211] Connecting 2000000 / 49842108
[1122.803986] Connecting 3000000 / 49842108
[1135.512216] Connecting 4000000 / 49842108
[1148.628952] Connecting 5000000 / 49842108
[1162.077250] Connecting 6000000 / 49842108
[1175.811280] Connecting 7000000 / 49842108
[1189.877267] Connecting 8000000 / 49842108
[1204.183587] Connecting 9000000 / 49842108
[1218.665330] Connecting 10000000 / 49842108
[1233.342914] Connecting 11000000 / 49842108
[1248.232154] Connecting 12000000 / 49842108
[1263.248191] Connecting 13000000 / 49842108
[1278.412281] Connecting 14000000 / 49842108
[1293.745346] Connecting 15000000 / 49842108
[1309.205846] Connecting 16000000 / 49842108
[1324.778392] Connecting 17000000 / 49842108
[1340.411836] Connecting 18000000 / 49842108
[1356.259099] Connecting 19000000 / 49842108
[1372.348652] Connecting 20000000 / 49842108
[1388.498608] Connecting 21000000 / 49842108
[1404.765338] Connecting 22000000 / 49842108
[1421.243003] Connecting 23000000 / 49842108
[1437.730416] Connecting 24000000 / 49842108
[1454.343027] Connecting 25000000 / 49842108
[1470.842553] Connecting 26000000 / 49842108
[1487.252767] Connecting 27000000 / 49842108
[1503.890172] Connecting 28000000 / 49842108
[1520.674507] Connecting 29000000 / 49842108
[1537.512344] Connecting 30000000 / 49842108
[1554.243554] Connecting 31000000 / 49842108
[1571.261185] Connecting 32000000 / 49842108
[1588.423622] Connecting 33000000 / 49842108
[1605.612023] Connecting 34000000 / 49842108
[1622.814732] Connecting 35000000 / 49842108
[1640.127180] Connecting 36000000 / 49842108
[1657.653865] Connecting 37000000 / 49842108
[1675.000573] Connecting 38000000 / 49842108
[1692.356633] Connecting 39000000 / 49842108
[1710.033347] Connecting 40000000 / 49842108
[1727.716764] Connecting 41000000 / 49842108
[1745.414362] Connecting 42000000 / 49842108
[1763.276527] Connecting 43000000 / 49842108
[1781.294348] Connecting 44000000 / 49842108
[1799.237047] Connecting 45000000 / 49842108
[1817.269081] Connecting 46000000 / 49842108
[1835.158843] Connecting 47000000 / 49842108
[1853.392363] Connecting 48000000 / 49842108
[1871.623912] Connecting 49000000 / 49842108
[1887.069338] Cleaning up memory
[1887.446420] Done creating preGraph
[1887.446430] Concatenation...
[1891.769758] Renumbering preNodes
[1891.769763] Initial preNode count 10841406
[1892.641880] Destroyed 5288575 preNodes
[1892.641885] Concatenation over!
[1892.641886] Clipping short tips off preGraph
[1893.539206] Concatenation...
[1895.215369] Renumbering preNodes
[1895.215374] Initial preNode count 5552831
[1895.983999] Destroyed 570299 preNodes
[1895.984005] Concatenation over!
[1895.984005] 348677 tips cut off
[1895.984006] 4982532 nodes left
[1895.984058] Writing into pregraph file output_assemble//PreGraph...
[1906.176922] Reading read set file output_assemble//Sequences;
[1915.896696] 49842108 sequences found
[1964.481035] Done
[1983.677058] Reading pre-graph file output_assemble//PreGraph
[1983.687280] Graph has 4982532 nodes and 49842108 sequences
[1988.820966] Scanning pre-graph file output_assemble//PreGraph for k-mers
[1990.379629] 38107571 kmers found
[1994.366868] Sorting kmer occurence table ... 
[2009.211901] Sorting done.
[2009.211905] Computing acceleration table... 
[2009.531053] Computing offsets... 
[2009.854870] Ghost Threading through reads 0 / 49842108
[2052.596868] Ghost Threading through reads 1000000 / 49842108
[2095.652450] Ghost Threading through reads 2000000 / 49842108
[2138.876847] Ghost Threading through reads 3000000 / 49842108
[2182.136506] Ghost Threading through reads 4000000 / 49842108
[2225.429489] Ghost Threading through reads 5000000 / 49842108
[2268.827155] Ghost Threading through reads 6000000 / 49842108
[2312.209800] Ghost Threading through reads 7000000 / 49842108
[2355.486468] Ghost Threading through reads 8000000 / 49842108
[2398.901014] Ghost Threading through reads 9000000 / 49842108
[2442.131584] Ghost Threading through reads 10000000 / 49842108
[2484.594057] Ghost Threading through reads 11000000 / 49842108
[2527.758703] Ghost Threading through reads 12000000 / 49842108
[2571.206343] Ghost Threading through reads 13000000 / 49842108
[2614.729983] Ghost Threading through reads 14000000 / 49842108
[2658.066174] Ghost Threading through reads 15000000 / 49842108
[2701.284993] Ghost Threading through reads 16000000 / 49842108
[2743.944280] Ghost Threading through reads 17000000 / 49842108
[2786.530756] Ghost Threading through reads 18000000 / 49842108
[2828.887761] Ghost Threading through reads 19000000 / 49842108
[2871.756382] Ghost Threading through reads 20000000 / 49842108
[2915.238169] Ghost Threading through reads 21000000 / 49842108
[2957.958273] Ghost Threading through reads 22000000 / 49842108
[3000.582279] Ghost Threading through reads 23000000 / 49842108
[3043.191357] Ghost Threading through reads 24000000 / 49842108
[3085.792753] Ghost Threading through reads 25000000 / 49842108
[3128.658674] Ghost Threading through reads 26000000 / 49842108
[3171.498324] Ghost Threading through reads 27000000 / 49842108
[3214.515312] Ghost Threading through reads 28000000 / 49842108
[3257.676483] Ghost Threading through reads 29000000 / 49842108
[3300.735239] Ghost Threading through reads 30000000 / 49842108
[3343.541205] Ghost Threading through reads 31000000 / 49842108
[3386.584116] Ghost Threading through reads 32000000 / 49842108
[3429.663449] Ghost Threading through reads 33000000 / 49842108
[3472.779588] Ghost Threading through reads 34000000 / 49842108
[3515.838517] Ghost Threading through reads 35000000 / 49842108
[3558.830074] Ghost Threading through reads 36000000 / 49842108
[3601.916567] Ghost Threading through reads 37000000 / 49842108
[3644.779441] Ghost Threading through reads 38000000 / 49842108
[3686.960596] Ghost Threading through reads 39000000 / 49842108
[3729.181615] Ghost Threading through reads 40000000 / 49842108
[3771.631503] Ghost Threading through reads 41000000 / 49842108
[3814.655938] Ghost Threading through reads 42000000 / 49842108
[3857.770224] Ghost Threading through reads 43000000 / 49842108
[3900.799923] Ghost Threading through reads 44000000 / 49842108
[3943.702912] Ghost Threading through reads 45000000 / 49842108
[3986.820053] Ghost Threading through reads 46000000 / 49842108
[4030.339803] Ghost Threading through reads 47000000 / 49842108
[4073.500554] Ghost Threading through reads 48000000 / 49842108
[4116.820197] Ghost Threading through reads 49000000 / 49842108
[4154.732030]  === Ghost-Threaded in 2144.877160 s
[4154.732036] Threading through reads 0 / 49842108
[4219.581906] Threading through reads 1000000 / 49842108
[4288.700419] Threading through reads 2000000 / 49842108
[4359.918434] Threading through reads 3000000 / 49842108
[4432.327552] Threading through reads 4000000 / 49842108
[4505.561499] Threading through reads 5000000 / 49842108
[4579.387189] Threading through reads 6000000 / 49842108
[4653.906206] Threading through reads 7000000 / 49842108
[4728.826215] Threading through reads 8000000 / 49842108
[4803.374829] Threading through reads 9000000 / 49842108
[4877.765096] Threading through reads 10000000 / 49842108
[4953.037797] Threading through reads 11000000 / 49842108
[5028.458751] Threading through reads 12000000 / 49842108
[5103.059404] Threading through reads 13000000 / 49842108
[5177.698222] Threading through reads 14000000 / 49842108
[5252.251314] Threading through reads 15000000 / 49842108
[5327.086272] Threading through reads 16000000 / 49842108
[5402.268450] Threading through reads 17000000 / 49842108
[5477.567766] Threading through reads 18000000 / 49842108
[5553.672566] Threading through reads 19000000 / 49842108
[5630.397445] Threading through reads 20000000 / 49842108
[5707.247839] Threading through reads 21000000 / 49842108
[5784.344620] Threading through reads 22000000 / 49842108
[5861.786154] Threading through reads 23000000 / 49842108
[5939.331939] Threading through reads 24000000 / 49842108
[6017.079654] Threading through reads 25000000 / 49842108
[6094.167729] Threading through reads 26000000 / 49842108
[6170.866511] Threading through reads 27000000 / 49842108
[6248.022536] Threading through reads 28000000 / 49842108
[6325.435575] Threading through reads 29000000 / 49842108
[6402.805791] Threading through reads 30000000 / 49842108
[6479.897322] Threading through reads 31000000 / 49842108
[6558.056719] Threading through reads 32000000 / 49842108
[6636.458641] Threading through reads 33000000 / 49842108
[6713.881356] Threading through reads 34000000 / 49842108
[6792.478318] Threading through reads 35000000 / 49842108
[6871.360660] Threading through reads 36000000 / 49842108
[6950.727471] Threading through reads 37000000 / 49842108
[7029.790624] Threading through reads 38000000 / 49842108
[7109.054334] Threading through reads 39000000 / 49842108
[7188.581410] Threading through reads 40000000 / 49842108
[7267.749091] Threading through reads 41000000 / 49842108
[7347.014004] Threading through reads 42000000 / 49842108
[7426.509642] Threading through reads 43000000 / 49842108
[7505.873206] Threading through reads 44000000 / 49842108
[7584.361388] Threading through reads 45000000 / 49842108
[7663.703325] Threading through reads 46000000 / 49842108
[7743.150611] Threading through reads 47000000 / 49842108
[7822.577056] Threading through reads 48000000 / 49842108
[7900.977050] Threading through reads 49000000 / 49842108
[7967.478634]  === Threaded in 3812.746597 s
[8239.165402] Correcting graph with cutoff 0.200000
[8239.396929] Determining eligible starting points
[8250.058891] Done listing starting nodes
[8250.058897] Initializing todo lists
[8252.207293] Done with initilization
[8252.207298] Activating arc lookup table
[8256.167547] Done activating arc lookup table
[8260.375180] 10000 / 4982532 nodes visited
[8264.178292] 20000 / 4982532 nodes visited
[8267.787194] 30000 / 4982532 nodes visited
[8271.268022] 40000 / 4982532 nodes visited
[8276.233271] 50000 / 4982532 nodes visited
[8283.501169] 60000 / 4982532 nodes visited
[8303.822453] 70000 / 4982532 nodes visited
[8305.932743] 80000 / 4982532 nodes visited
[8330.173024] 90000 / 4982532 nodes visited
[8351.503617] 100000 / 4982532 nodes visited
[8362.902306] 110000 / 4982532 nodes visited
[8372.325284] 120000 / 4982532 nodes visited
[8386.194525] 130000 / 4982532 nodes visited
[8400.541660] 140000 / 4982532 nodes visited
[8408.123540] 150000 / 4982532 nodes visited
[8419.402978] 160000 / 4982532 nodes visited
[8426.747699] 170000 / 4982532 nodes visited
[8444.779486] 180000 / 4982532 nodes visited
[8454.558808] 190000 / 4982532 nodes visited
[8466.513638] 200000 / 4982532 nodes visited
[8473.572372] 210000 / 4982532 nodes visited
[8478.534353] 220000 / 4982532 nodes visited
[8485.487493] 230000 / 4982532 nodes visited
[8507.493413] 240000 / 4982532 nodes visited
[8515.868187] 250000 / 4982532 nodes visited
[8525.610807] 260000 / 4982532 nodes visited
[8543.345938] 270000 / 4982532 nodes visited