Created
June 12, 2018 08:51
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{ | |
"cells": [ | |
{ | |
"cell_type": "code", | |
"execution_count": 1, | |
"metadata": {}, | |
"outputs": [], | |
"source": [ | |
"import sparse" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 2, | |
"metadata": {}, | |
"outputs": [], | |
"source": [ | |
"import dask.array as da" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 9, | |
"metadata": {}, | |
"outputs": [], | |
"source": [ | |
"s = sparse.random((100000, 100000), density=0.0001)" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 10, | |
"metadata": {}, | |
"outputs": [], | |
"source": [ | |
"x = da.from_array(s, chunks=(10000, 10000), asarray=False, fancy=False).persist()" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 11, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"name": "stdout", | |
"output_type": "stream", | |
"text": [ | |
"2.571170042811673e+22\n", | |
"CPU times: user 18 s, sys: 2.83 s, total: 20.9 s\n", | |
"Wall time: 15.6 s\n" | |
] | |
} | |
], | |
"source": [ | |
"%%time\n", | |
"for i in range(4):\n", | |
" s = (s + s.T) * s.sum(axis=0)\n", | |
"print(s.sum())" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 12, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"name": "stdout", | |
"output_type": "stream", | |
"text": [ | |
"2.5711700428116743e+22\n", | |
"CPU times: user 15.5 s, sys: 2.84 s, total: 18.3 s\n", | |
"Wall time: 7.34 s\n" | |
] | |
} | |
], | |
"source": [ | |
"%%time \n", | |
"for i in range(4):\n", | |
" x = (x + x.T) * x.sum(axis=0)\n", | |
"y = x.sum()\n", | |
"print(y.compute())" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 13, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"name": "stderr", | |
"output_type": "stream", | |
"text": [ | |
"/Users/hameerabbasi/anaconda3/lib/python3.6/site-packages/dask/array/core.py:2187: UserWarning: Increasing number of chunks by factor of 10\n", | |
" (nparts / max_parts))\n" | |
] | |
}, | |
{ | |
"data": { | |
"text/plain": [ | |
"6.720557033161344e+41" | |
] | |
}, | |
"execution_count": 13, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"x.dot(x.T).sum().compute()" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": null, | |
"metadata": {}, | |
"outputs": [], | |
"source": [] | |
} | |
], | |
"metadata": { | |
"kernelspec": { | |
"display_name": "Python 3", | |
"language": "python", | |
"name": "python3" | |
}, | |
"language_info": { | |
"codemirror_mode": { | |
"name": "ipython", | |
"version": 3 | |
}, | |
"file_extension": ".py", | |
"mimetype": "text/x-python", | |
"name": "python", | |
"nbconvert_exporter": "python", | |
"pygments_lexer": "ipython3", | |
"version": "3.6.5" | |
} | |
}, | |
"nbformat": 4, | |
"nbformat_minor": 2 | |
} |
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