My emacs config in LiuLab

liulab.emacs

(setenv "PATH" (concat (getenv "PATH") ":/usr/local/bin:/Applications/Racket5/bin/:/usr/texbin/"))
(setenv "CLASSPATH" ":/Users/hanfei/Documents/Sandbox/TIJ/TIJS/TIJ-3rd-edition-code")


(if x-resource-name
    (progn
      (set-face-attribute 'default nil :font "inconsolata-18")
      ))
(if (not (equal emacs-version "23.4.1"))
    (progn
	(server-mode 'on)
	(add-hook 'emacs-lisp-mode-hook 'company-mode)
	(add-hook 'c-mode-common-hook 'company-mode)
	(add-hook 'python-mode-hook 'company-mode)))


(transient-mark-mode 'on)

(set-default 'tramp-default-proxy-alist (quote("my-sudo-alias" nil "/ssh:hanfei@cistrome.org#33001")))
(show-paren-mode t)
(defun insert-buffer-name ()
  (interactive)
  (insert (buffer-name)))

(add-to-list 'load-path "~/.emacs.d")
(add-to-list 'load-path "~/.emacs.d/slime")

(eval-after-load "slime"
  '(progn

     (setq slime-lisp-implementations
	   '((sbcl ("sbcl" "--core" "/Users/hanfei/.emacs.d/slime/sbcl.core-for-slime"))
	     (clisp ("/usr/local/bin/clisp"))))
     ;; (setq inferior-lisp-program "/usr/local/bin/clisp -K full")

     (slime-setup '(slime-fancy slime-banner slime-asdf))))
(require 'slime)


(add-to-list 'load-path "~/.emacs.d/elpa/auctex-11.86/")

;; (require 'quack)
(setq scheme-program-name "racket")

(defun browse-url-default-macosx-browser (url &optional new-window)
  "Ask MacOS to load URL using the system-default web browser."
  (interactive (browse-url-interactive-arg "URL: "))
  (start-process "browser" nil "open" "-a" "firefox" url)
  )
(setq browse-url-browser-function 'browse-url-default-macosx-browser)


(setq bookmark-save-flag 1)

;; (add-to-list 'load-path "~/.emacs.d/python-mode.el-6.0.8/")
;; (setq py-install-directory "~/.emacs.d/python-mode.el-6.0.8/")
;; (require 'python-mode)

(require 'javadoc-help)


;; to speedup, just load it on demand
(autoload 'pylookup-lookup "pylookup"
  "Lookup SEARCH-TERM in the Python HTML indexes." t)

(autoload 'pylookup-update "pylookup" 
  "Run pylookup-update and create the database at `pylookup-db-file'." t)
(global-set-key (kbd "C-h j")   'javadoc-lookup)
(global-set-key (kbd "C-h y")   'pylookup-lookup)
(global-set-key (kbd "C-c b") 'insert-buffer-name)



(custom-set-variables
  ;; custom-set-variables was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 '(TeX-PDF-mode t t)
 '(TeX-default-mode (quote plain-tex-mode))
 '(ansi-color-names-vector ["#2e3436" "#a40000" "#4e9a06" "#c4a000" "#204a87" "#5c3566" "#729fcf" "#eeeeec"])
 '(c-default-style (quote ((c-mode . "linux") (java-mode . "java") (awk-mode . "awk") (other . "gnu"))))
 '(custom-enabled-themes nil)
 '(doc-view-continuous t)
 '(ede-project-directories (quote ("/Users/hanfei/Documents/mis")))
 '(exec-path (quote ("/usr/bin" "/bin" "/usr/sbin" "/sbin" "/Applications/Emacs.app/Contents/MacOS/bin" "/usr/local/bin" "/usr/local/Cellar/ghostscript/9.05/bin" "/usr/texbin")))
 '(gud-gdb-command-name "/usr/local/bin/gdb -i=mi")
)
(custom-set-faces
  ;; custom-set-faces was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.
  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
 )


;;BEGIN-RACKET-SCRIBBLE-EMACS-INSTALL
;; Updated: 2012-03-18T04:41:25Z
;; (condition-case err
;;     (require 'scribble "/Users/hanfei/Library/Racket/planet/300/5.2.1/cache/neil/scribble-emacs.plt/1/2/scribble")
;;   (error (message "Could not load Scribble Emacs: %s" err)))
;;END-RACKET-SCRIBBLE-EMACS-INSTALL

(setq org-hide-leading-stars t)
;; (require 'gnuplot)
;; (setq gnuplot-program "/usr/bin/gnuplot")

;; automatically open files ending with .gp or .gnuplot in gnuplot mode
(setq auto-mode-alist 
      (append '(("\\.\\(gp\\|gnuplot\\)$" . gnuplot-mode)) auto-mode-alist))




(setq TeX-auto-save t)
(setq TeX-parse-self t)
(setq-default TeX-master nil)
(setq TeX-view-program-selection
      '((output-pdf "PDF Viewer")))
(setq TeX-view-program-list
      '(("PDF Viewer" "open %o")))



(global-ede-mode)                      ; Enable the Project management system
(setq semantic-default-submodes '(global-semantic-idle-scheduler-mode
                                  global-semanticdb-minor-mode
                                  global-semantic-idle-summary-mode
                                  global-semantic-mru-bookmark-mode
				  global-semantic-highlight-func-mode
				  ))
(semantic-mode 1)

(defconst user-include-dirs
  (list
   "/usr/llvm-gcc-4.2/bin/../lib/gcc/i686-apple-darwin11/4.2.1/include"
   "/usr/include/c++/4.2.1"
   "/usr/include/c++/4.2.1/backward"
   "/usr/local/include"
   "/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/include"
   "/usr/include"
   "/System/Library/Frameworks"
   "/Library/Frameworks"))

(mapc (lambda (dir)
	(semantic-add-system-include dir 'c++-mode)
	(semantic-add-system-include dir 'c-mode))
      user-include-dirs)
(require 'semantic/analyze/refs)

(require 'flymake)



;; (global-semantic-decoration-mode 1)
;; (require 'semantic/decorate/include nil 'noerror)
;; (semantic-toggle-decoration-style "semantic-tag-boundary" -1)
;; (global-semantic-highlight-edits-mode (if window-system 1 -1))

;; (global-semantic-show-parser-state-mode 1)
;; (global-ede-mode 1)
(when (executable-find "global")
  (semanticdb-enable-gnu-global-databases 'c-mode)
  (semanticdb-enable-gnu-global-databases 'c++-mode)
  (setq ede-locate-setup-options '(ede-locate-global ede-locate-base)))
(when (executable-find "gcc")
  (require 'semantic/bovine/c nil 'noerror)
  (and (eq system-type 'windows-nt)
       (semantic-gcc-setup)))

(require 'semantic/bovine/el nil 'noerror)
(setq pulse-command-advice-flag (if window-system 1 nil))
(global-set-key (kbd "C-c h j") 'semantic-ia-fast-jump)
(global-set-key (kbd "C-c C-k") 'compile)

;; (remove-hook 'python-mode-hook 'company-mode)


(defun show-fly-err-at-point ()
  "If the cursor is sitting on a flymake error, display the message in the minibuffer"
  (interactive)
  (let ((line-no (line-number-at-pos)))
    (dolist (elem flymake-err-info)
      (if (eq (car elem) line-no)
          (let ((err (car (second elem))))
            (message "%s" (flymake-ler-text err)))))))

;; (setq py-shell-name "ipython")
;; (setq ipython-command "ipython")
;; (require 'ipython)