Installing STAMP for Metagenomic Statistical Analyses

STAMP_Install.txt

##Assumes that Anaconda/Miniconda etc are installed: 
#Credit to Donovan Parks at STAMP Google Group

#1. Deactivate all the environments loaded
conda deactivate

#2. Create a new environment for stamp:
conda create -y -n stamp-test python=2.7

#3. Install all the dependencies:
pip install numpy
pip install cython
pip install biom-format==2.1.7
pip install STAMP
###this is the most important one, as QT4 is the GUI base for STAMP:
conda install -c asmeurer pyqt=4 

#4. Check if installation has worked
STAMP